Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,175,131 |
G→A |
Q34* (CAA→TAA) |
gatY ← |
tagatose‑bisphosphate aldolase 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,175,131 | 0 | G | A | 100.0%
| 362.0
/ NA
| 102 | Q34* (CAA→TAA) | gatY | tagatose‑bisphosphate aldolase 1 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (27/75); total (27/75) |
Only 100 of 105 total aligned reads displayed.
GATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGT > NC_000913/2175041‑2175220
|
gATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACa < 1:3038098/93‑1 (MQ=255)
gATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACa < 1:2229525/93‑1 (MQ=255)
aTTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACAt < 1:426538/93‑1 (MQ=255)
aTTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACAt < 1:2428244/93‑1 (MQ=255)
aTTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACAt < 1:643378/93‑1 (MQ=255)
ttttCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATc < 1:43689/93‑1 (MQ=255)
tttCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCg > 2:4044999/1‑93 (MQ=255)
ttCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGt < 1:2375706/93‑1 (MQ=255)
tCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGtt < 2:412621/93‑1 (MQ=255)
tCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGtt < 1:324575/93‑1 (MQ=255)
cTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGttt < 2:1966774/93‑1 (MQ=255)
tGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTc < 1:2941536/93‑1 (MQ=255)
tGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTc < 2:3235221/93‑1 (MQ=255)
tACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCga < 2:2386525/93‑1 (MQ=255)
tACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCga < 1:986948/93‑1 (MQ=255)
tACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCga < 1:3500206/93‑1 (MQ=255)
tACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCga < 2:102868/93‑1 (MQ=255)
ccAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCgaga > 1:431283/1‑93 (MQ=255)
ccAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCgaga > 2:1226004/1‑93 (MQ=255)
ccAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCgaga < 2:104992/93‑1 (MQ=255)
cAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGAt < 2:3893030/93‑1 (MQ=255)
aGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGAtt < 2:516605/93‑1 (MQ=255)
gCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATtg < 2:2874664/93‑1 (MQ=255)
gCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATtg > 1:1927671/1‑93 (MQ=255)
cATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATtgt < 1:905568/93‑1 (MQ=255)
tGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGa > 2:2017160/1‑93 (MQ=255)
gAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGaa < 2:1054640/93‑1 (MQ=255)
gAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGaa > 1:1467185/1‑93 (MQ=255)
gAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGaa > 1:2445693/1‑93 (MQ=255)
gTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAata < 2:1926005/93‑1 (MQ=255)
aaaTGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATAtt < 2:268925/93‑1 (MQ=255)
aaaTGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATAtt < 1:3841057/93‑1 (MQ=255)
aaTGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTg < 2:4668632/93‑1 (MQ=255)
aTGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGa < 1:971024/93‑1 (MQ=255)
tgtgCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGaa < 2:3623853/93‑1 (MQ=255)
tgtgCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGaa < 2:2387700/93‑1 (MQ=255)
tgtgCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGaa < 2:186830/93‑1 (MQ=255)
gtgCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAAt < 1:3477980/93‑1 (MQ=255)
ccAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGcc < 2:1822450/93‑1 (MQ=255)
ccAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGcc < 1:3251458/93‑1 (MQ=255)
ccAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGcc < 1:728558/93‑1 (MQ=255)
ccAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGAGTGTGAATATTGAATgtc > 2:3789744/1‑91 (MQ=255)
cAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCg > 1:1705438/1‑93 (MQ=255)
cAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCg < 1:3271217/93‑1 (MQ=255)
cAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCg > 2:504253/1‑93 (MQ=255)
cAGGCGTTCCGGCGATGATGACCGGCGAATGCAGGTTGGCAGCGGTTTCTACCCCCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCg < 1:3284537/93‑1 (MQ=255)
aGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCgg > 2:81793/1‑93 (MQ=255)
ggCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGa < 2:436414/93‑1 (MQ=255)
gCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGaa < 2:2258533/93‑1 (MQ=255)
cGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAAc < 2:2072388/93‑1 (MQ=255)
gTTCCGGCGATGATGACCGTCGCATGCAGGTTGGCAGCGGCTTCTACCACCACTTACTTCGTTTCGAGATTGTGAATATTGAATTCCggcatc > 2:4155742/1‑89 (MQ=255)
ttCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCg > 1:4023448/1‑93 (MQ=255)
cGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCAt < 2:4524437/93‑1 (MQ=255)
gCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATaa < 1:351520/93‑1 (MQ=255)
gCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATaa < 2:2106125/93‑1 (MQ=255)
cGATGATGACCGGCGCATGCAGGTTGGCAGCTGTTTCTACCCCCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGCAACCGCATAAc < 2:1499453/93‑1 (MQ=255)
cGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAAc > 2:1319737/1‑93 (MQ=255)
gatgatGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAAcc < 2:3007730/93‑1 (MQ=255)
atgatgACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAAccg > 2:3154053/1‑93 (MQ=255)
gatgaCCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAAccgcc < 1:2158271/93‑1 (MQ=255)
aCCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCgcgc < 2:1328904/93‑1 (MQ=255)
gcgcATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCtgtg < 1:1953036/93‑1 (MQ=255)
cgcATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGc < 2:3748511/93‑1 (MQ=255)
gcATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCg < 1:3886474/93‑1 (MQ=255)
cATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCgt > 1:2368132/1‑93 (MQ=255)
aTGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCgtt < 1:3886982/93‑1 (MQ=255)
aTGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCgtt > 1:4673951/1‑93 (MQ=255)
aTGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCgtt > 2:3200776/1‑93 (MQ=255)
tGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCgttg < 2:3299305/93‑1 (MQ=255)
gCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCgttgt < 2:3412559/93‑1 (MQ=255)
aGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTc < 1:3191368/93‑1 (MQ=255)
ggTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCa < 2:3092699/93‑1 (MQ=255)
ggTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCa < 2:3201217/93‑1 (MQ=255)
ggTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAAAATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCa > 1:950498/1‑93 (MQ=255)
tGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCa < 1:1793684/93‑1 (MQ=255)
tGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCa < 1:2472694/93‑1 (MQ=255)
tGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCa < 2:3566498/93‑1 (MQ=255)
gCAGCGGTTTCTACCACCACTTACTTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATc < 2:4597865/93‑1 (MQ=255)
cAGCGTTTTCTACCACCACTTACATCTTTTCGAAATTGTGAATATTGAATCCCGAACCCCCATAACCGCCGCGCTCTGCGTTTTTCAGCATCt < 2:2395309/93‑1 (MQ=255)
cAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCt < 1:1011018/93‑1 (MQ=255)
aGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTg > 1:769640/1‑93 (MQ=255)
gCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGc > 1:2140306/1‑93 (MQ=255)
gCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGc > 1:3986620/1‑93 (MQ=255)
gCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGc < 2:1610733/93‑1 (MQ=255)
cGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCt > 2:4385131/1‑93 (MQ=255)
ggTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCtt < 1:1864997/93‑1 (MQ=255)
ggTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCtt < 1:3666327/93‑1 (MQ=255)
gTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCttt < 1:2635529/93‑1 (MQ=255)
gTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCttt < 1:174040/93‑1 (MQ=255)
tttCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTg < 2:3643031/93‑1 (MQ=255)
ttCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGt < 2:1661290/93‑1 (MQ=255)
tCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTc < 2:2394412/93‑1 (MQ=255)
tACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGa > 2:484198/1‑93 (MQ=255)
tACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGa > 2:484199/1‑93 (MQ=255)
caccacTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATAc < 1:3607134/93‑1 (MQ=255)
ccacTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCa < 1:2528386/93‑1 (MQ=255)
ccacTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCa > 1:345081/1‑93 (MQ=255)
ccacTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCa > 2:725578/1‑93 (MQ=255)
cacTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCAc < 2:2353188/93‑1 (MQ=255)
cTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGt < 1:3108909/93‑1 (MQ=255)
|
GATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGT > NC_000913/2175041‑2175220
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAT > NC_000913/2175040‑2175224
|
AGATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACA < SRR4302535.1347711/94‑1 (MQ=60)
AGATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACA < SRR4302535.2309096/94‑1 (MQ=60)
GATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACAT < SRR4302535.3059379/94‑1 (MQ=60)
GATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACAT < SRR4302535.2245380/94‑1 (MQ=60)
ATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATC < SRR4302535.647870/94‑1 (MQ=60)
ATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATC < SRR4302535.429509/94‑1 (MQ=60)
ATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATC < SRR4302535.2445743/94‑1 (MQ=60)
TTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCG < SRR4302535.44019/94‑1 (MQ=60)
TTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTT < SRR4302535.2392774/94‑1 (MQ=60)
TCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTT < SRR4302535.326822/94‑1 (MQ=60)
TGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCG < SRR4302535.2962216/94‑1 (MQ=60)
TACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAG < SRR4302535.993961/94‑1 (MQ=60)
TACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAG < SRR4302535.3524541/94‑1 (MQ=60)
ACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGA > SRR4302535.434284/1‑94 (MQ=60)
AGCATGAGTAAATGTGCCAGGCGTTCCTGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTTTACCACCACTTACATCGTTTCGAGCTTG > SRR4302535.948756/1‑94 (MQ=60)
AGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTG > SRR4302535.1941563/1‑94 (MQ=60)
CATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTG < SRR4302535.911995/94‑1 (MQ=60)
TGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAA > SRR4302535.2463310/1‑94 (MQ=60)
TGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAA > SRR4302535.1477694/1‑94 (MQ=60)
GTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATAT < SRR4302535.44772/94‑1 (MQ=60)
AAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTG < SRR4302535.3867523/94‑1 (MQ=60)
ATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAA < SRR4302535.977915/94‑1 (MQ=60)
GTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATG < SRR4302535.3502149/94‑1 (MQ=60)
CCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCG > SRR4302535.1717765/1‑94 (MQ=60)
CCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCG < SRR4302535.733670/94‑1 (MQ=60)
CCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCG < SRR4302535.3274050/94‑1 (MQ=60)
CAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGG < SRR4302535.3293939/94‑1 (MQ=60)
CAGGCGTTCCGGCGATGATGACCGGCGAATGCAGGTTGGCAGCGGTTTCTACCCCCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGG < SRR4302535.3307368/94‑1 (MQ=60)
GTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCG > SRR4302535.4050974/1‑94 (MQ=60)
GCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAAC < SRR4302535.353942/94‑1 (MQ=60)
GATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCG < SRR4302535.2173780/94‑1 (MQ=60)
GCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGC < SRR4302535.1967093/94‑1 (MQ=60)
GCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGT < SRR4302535.3913134/94‑1 (MQ=60)
GCATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGT > SRR4302535.2385133/1‑94 (MQ=60)
CATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTT > SRR4302535.4705509/1‑94 (MQ=60)
ATGCAGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTG < SRR4302535.3913643/94‑1 (MQ=60)
AGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCA < SRR4302535.3213445/94‑1 (MQ=60)
AGGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAAAATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCA > SRR4302535.957228/1‑94 (MQ=60)
GGTTGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAG < SRR4302535.3091254/94‑1 (MQ=60)
TGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCAT < SRR4302535.1806651/94‑1 (MQ=60)
TGGCAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCAT < SRR4302535.2490523/94‑1 (MQ=60)
CAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTG < SRR4302535.1018201/94‑1 (MQ=60)
CAGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTG > SRR4302535.775056/1‑94 (MQ=60)
AGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGC > SRR4302535.4013880/1‑94 (MQ=60)
AGCGGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGC > SRR4302535.2155715/1‑94 (MQ=60)
GGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTT < SRR4302535.3691715/94‑1 (MQ=60)
GGTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTT < SRR4302535.1878442/94‑1 (MQ=60)
GTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTG < SRR4302535.175242/94‑1 (MQ=60)
GTTTCTACCACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTG < SRR4302535.2654414/94‑1 (MQ=60)
CACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACC < SRR4302535.3632154/94‑1 (MQ=60)
ACCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCA > SRR4302535.347459/1‑94 (MQ=60)
CCACTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCAC < SRR4302535.2546603/94‑1 (MQ=60)
CTTACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTA < SRR4302535.3130554/94‑1 (MQ=60)
ACATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAT > SRR4302535.469411/1‑94 (MQ=60)
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AGATTTTCTGTACCAGCATGAGTAAATGTGCCAGGCGTTCCGGCGATGATGACCGGCGCATGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAT > NC_000913/2175040‑2175224
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
