Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,177,153	T→C	Y105H (TAT→CAT)	yegT →	putative nucleoside permease protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,177,153	0	T	C	100.0%	714.1 / NA	224	Y105H (TAT→CAT)	yegT	putative nucleoside permease protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (126/98); total (126/98)

Only 100 of 241 total aligned reads displayed.

TGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCTATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGGGC  >  NC_000913/2177064‑2177242

tGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCcata                                                                                        <  2:7310965/93‑1 (MQ=255)

tGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCcata                                                                                        >  1:2672779/1‑93 (MQ=255)

tGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCcata                                                                                        <  1:7929366/93‑1 (MQ=255)

tGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCcata                                                                                        <  2:7446692/93‑1 (MQ=255)

 gTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCatat                                                                                       <  2:7227484/93‑1 (MQ=255)

  ttCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATg                                                                                      >  1:3132954/1‑93 (MQ=255)

    cGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGcc                                                                                    >  2:5054706/1‑93 (MQ=255)

    cGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGca                                                                                    >  1:3251998/1‑92 (MQ=255)

       aGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGAc                                                                                 <  1:903675/93‑1 (MQ=255)

       aGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGAc                                                                                 >  1:395912/1‑93 (MQ=255)

        ggCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGAcc                                                                                >  1:6509108/1‑93 (MQ=255)

        ggCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGATCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGAcc                                                                                >  2:3387541/1‑93 (MQ=255)

        ggCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCCGGTTCTTCCCGTTACTGCTGGCCTACTCGCTCACCCATATGCCGAcc                                                                                >  2:4394478/1‑93 (MQ=255)

         gcgcgcTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCa                                                                               <  1:5040811/93‑1 (MQ=255)

         gcgcgcTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCa                                                                               <  1:7504421/93‑1 (MQ=255)

           gcgcTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCAtt                                                                             <  2:6269405/93‑1 (MQ=255)

             gctgctGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTgc                                                                           <  2:641655/93‑1 (MQ=255)

               tgctgATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTgcgc                                                                         >  1:6283301/1‑93 (MQ=255)

               tgctgATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTgcgc                                                                         >  1:1783652/1‑93 (MQ=255)

               tgccgATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTgcgc                                                                         >  1:1222688/1‑93 (MQ=255)

                 ctgATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTg                                                                       >  1:7200721/1‑93 (MQ=255)

                  tgATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCCTATGCCGACCATTGCGCTGa                                                                      >  2:5235881/1‑93 (MQ=255)

                  tgATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGa                                                                      >  1:6304065/1‑93 (MQ=255)

                  tgATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGa                                                                      >  1:1912895/1‑93 (MQ=255)

                   gATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGAc                                                                     >  1:6861920/1‑93 (MQ=255)

                   gATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGAc                                                                     >  2:481576/1‑93 (MQ=255)

                     tGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTa                                                                   <  1:2208770/93‑1 (MQ=255)

                     tGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTa                                                                   >  2:4420143/1‑93 (MQ=255)

                      gTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTaa                                                                  <  1:3138656/93‑1 (MQ=255)

                       tATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAAc                                                                 >  2:2899253/1‑93 (MQ=255)

                       tATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAAc                                                                 >  1:1116959/1‑93 (MQ=255)

                       tATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAAc                                                                 <  2:1852437/93‑1 (MQ=255)

                        aTTTCGCTGCGCAACAGACCACTTTTGCCGTGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACa                                                                <  2:7734799/93‑1 (MQ=255)

                        aTTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACa                                                                <  1:5639779/93‑1 (MQ=255)

                        aTTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACa                                                                <  1:6163750/93‑1 (MQ=255)

                         tttCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAg                                                               <  1:3676295/93‑1 (MQ=255)

                         tttCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAg                                                               <  1:4310298/93‑1 (MQ=255)

                         tttCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAg                                                               >  1:6602395/1‑93 (MQ=255)

                           tCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCa                                                             <  2:537200/93‑1 (MQ=255)

                            cGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCAt                                                            >  2:118952/1‑93 (MQ=255)

                             gCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTCACAGCAtg                                                           >  2:3050787/1‑92 (MQ=255)

                              cTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCg                                                          >  2:6924776/1‑93 (MQ=255)

                               tGCGCCACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGc                                                         <  2:5607889/93‑1 (MQ=255)

                               tGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGc                                                         <  2:2786850/93‑1 (MQ=255)

                                  gcAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCttt                                                      <  1:5724868/93‑1 (MQ=255)

                                  gcAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCttt                                                      <  1:6034140/93‑1 (MQ=255)

                                  gcAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCttt                                                      <  1:5311557/93‑1 (MQ=255)

                                   cAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCtttt                                                     <  2:7856343/93‑1 (MQ=255)

                                   cAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCtttt                                                     <  2:2319611/93‑1 (MQ=255)

                                   cAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCtttt                                                     <  2:5887721/93‑1 (MQ=255)

                                   cAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCtttt                                                     <  1:5690425/93‑1 (MQ=255)

                                     aCAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGc                                                   >  1:1452153/1‑93 (MQ=255)

                                     aCAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGc                                                   >  1:1318557/1‑93 (MQ=255)

                                        gACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCaa                                                >  1:4849003/1‑93 (MQ=255)

                                         aCCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAAc                                               >  2:3915937/1‑93 (MQ=255)

                                         aCCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAAc                                               <  2:1583620/93‑1 (MQ=255)

                                          ccACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACg                                              >  1:763900/1‑93 (MQ=255)

                                           cACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGt                                             <  1:236249/93‑1 (MQ=255)

                                             cTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCCACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGc                                           >  2:5450357/1‑93 (MQ=255)

                                                 tGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGa                                       <  1:1837010/93‑1 (MQ=255)

                                                     gggTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGtt                                   >  1:1072663/1‑93 (MQ=255)

                                                     gggTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGtt                                   <  2:2309160/93‑1 (MQ=255)

                                                     gggTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGtt                                   <  1:1058272/93‑1 (MQ=255)

                                                        ttcttcCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAg                                >  2:1749036/1‑93 (MQ=255)

                                                        ttcttcCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAg                                >  1:5500795/1‑93 (MQ=255)

                                                        ttcttcCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAg                                <  1:7381630/93‑1 (MQ=255)

                                                         tcttcCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGc                               <  2:1938184/93‑1 (MQ=255)

                                                         tcttcCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGc                               <  1:6960544/93‑1 (MQ=255)

                                                              ccGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGAt                          >  1:3217263/1‑93 (MQ=255)

                                                              ccGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGAt                          >  1:4049889/1‑93 (MQ=255)

                                                               cGTTACTGCTGGCCTACTCGCTAGCCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGAtt                         <  2:4305228/93‑1 (MQ=255)

                                                               cGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGAtt                         >  1:3278294/1‑93 (MQ=255)

                                                                    ctgctgGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCcg                    <  2:6653597/93‑1 (MQ=255)

                                                                    ctgctgGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCcg                    <  1:4448895/93‑1 (MQ=255)

                                                                     tgctgGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCcgc                   >  2:1484628/1‑93 (MQ=255)

                                                                     tgctgGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCcgc                   >  2:1148935/1‑93 (MQ=255)

                                                                       ctgGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCgcgc                 >  2:7944/1‑93 (MQ=255)

                                                                        tgGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCa                <  1:6675370/93‑1 (MQ=255)

                                                                        tgGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCa                <  1:163794/93‑1 (MQ=255)

                                                                        tgGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCa                >  2:2849600/1‑93 (MQ=255)

                                                                          gCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCAtt              <  1:6657136/93‑1 (MQ=255)

                                                                          gCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCAtt              <  1:6397946/93‑1 (MQ=255)

                                                                            cTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCg            >  2:4104241/1‑93 (MQ=255)

                                                                             tACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCgt           <  2:1875856/93‑1 (MQ=255)

                                                                             tACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCgt           >  1:7555781/1‑93 (MQ=255)

                                                                             tACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCgg           >  2:1779079/1‑92 (MQ=255)

                                                                              aCTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCgtg          <  1:1585975/93‑1 (MQ=255)

                                                                               cTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCgtgt         >  2:5794389/1‑93 (MQ=255)

                                                                               cTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCgtgt         >  1:4626560/1‑93 (MQ=255)

                                                                                 cGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGa       <  1:3451526/93‑1 (MQ=255)

                                                                                  gCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGAt      >  2:3177112/1‑93 (MQ=255)

                                                                                  gCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGAt      >  2:1231732/1‑93 (MQ=255)

                                                                                   cTAACCCATATGCCGACTATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATg     <  2:1006710/93‑1 (MQ=255)

                                                                                   cTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATg     >  2:3797998/1‑93 (MQ=255)

                                                                                    tAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATgg    >  2:5691311/1‑93 (MQ=255)

                                                                                    tAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATgg    >  1:2732294/1‑93 (MQ=255)

                                                                                    tAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATgg    >  2:5511689/1‑93 (MQ=255)

                                                                                    tAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATgg    <  1:4957223/93‑1 (MQ=255)

                                                                                    tAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATgg    >  2:4475323/1‑93 (MQ=255)

                                                                                      aCCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGGGc  >  2:399323/1‑93 (MQ=255)

TGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCTATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGGGC  >  NC_000913/2177064‑2177242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTGATGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCTATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGGGCACTA  >  NC_000913/2177060‑2177246

TTGATGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCC                                                                                               >  SRR4302543.6262961/1‑94 (MQ=60)

TTGATGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCC                                                                                               <  SRR4302543.596322/94‑1 (MQ=60)

 TGATGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCA                                                                                              >  SRR4302543.2735599/1‑94 (MQ=60)

   ATGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGTGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATA                                                                                            >  SRR4302543.1882702/1‑94 (MQ=60)

   ATGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATA                                                                                            >  SRR4302543.2697014/1‑94 (MQ=60)

    ccactctAGGCGCGCTTCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCACGTTACTGCTGGCCTACTCGCTAACCCATAT                                                                                           <  SRR4302543.5649607/87‑1 (MQ=60)

    ccactctAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCACGTTACTGCTGGCCTACTCGCTAACCCATAT                                                                                           <  SRR4302543.5649606/87‑1 (MQ=60)

    TGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGTCTACTCGCTAACCCATAT                                                                                           >  SRR4302543.3164183/1‑94 (MQ=60)

    TGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATAT                                                                                           <  SRR4302543.3278259/94‑1 (MQ=60)

    TGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATAT                                                                                           <  SRR4302543.8003813/94‑1 (MQ=60)

    TGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATAT                                                                                           <  SRR4302543.3765365/94‑1 (MQ=60)

     GTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATG                                                                                          >  SRR4302543.3161131/1‑94 (MQ=60)

       TCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCC                                                                                        >  SRR4302543.3281395/1‑94 (MQ=60)

       TCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCA                                                                                        >  SRR4302543.3281396/1‑94 (MQ=60)

          CAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGAC                                                                                     >  SRR4302543.399569/1‑94 (MQ=60)

           AGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACC                                                                                    <  SRR4302543.7606677/94‑1 (MQ=60)

           AGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACC                                                                                    <  SRR4302543.911634/94‑1 (MQ=60)

           AGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACC                                                                                    >  SRR4302543.6570421/1‑94 (MQ=60)

           AGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACC                                                                                    >  SRR4302543.6756377/1‑94 (MQ=60)

           AGGCGAGCTGCTGATGTATTTCGCTGCGTAACAGACCACTTTTGCCGGGTTCTTCCAGTTACTGCTGACCTACTCGCTAACCCATATGCCGACC                                                                                    <  SRR4302543.7606676/94‑1 (MQ=60)

             GCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCAT                                                                                  <  SRR4302543.7576159/94‑1 (MQ=60)

             GCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCAT                                                                                  <  SRR4302543.5086662/94‑1 (MQ=60)

               GCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTG                                                                                >  SRR4302543.7390099/1‑94 (MQ=60)

               GCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTG                                                                                <  SRR4302543.3388031/94‑1 (MQ=60)

                 GCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCG                                                                              <  SRR4302543.6734219/94‑1 (MQ=60)

                 GCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCG                                                                              <  SRR4302543.3244556/94‑1 (MQ=60)

                 GCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCG                                                                              <  SRR4302543.907544/94‑1 (MQ=60)

                 GCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCG                                                                              <  SRR4302543.6155953/94‑1 (MQ=60)

                  CTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGC                                                                             >  SRR4302543.6517556/1‑94 (MQ=60)

                  CTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGC                                                                             >  SRR4302543.6342500/1‑94 (MQ=60)

                  CTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGC                                                                             >  SRR4302543.1799598/1‑94 (MQ=60)

                  CTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGC                                                                             >  SRR4302543.5109823/1‑94 (MQ=60)

                  CTGCCGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGC                                                                             >  SRR4302543.1233677/1‑94 (MQ=60)

                   TGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCT                                                                            <  SRR4302543.4756931/94‑1 (MQ=60)

                   TGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCT                                                                            <  SRR4302543.1076130/94‑1 (MQ=60)

                   TGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCT                                                                            >  SRR4302543.6707674/1‑94 (MQ=60)

                    TCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTG                                                                           <  SRR4302543.1128386/94‑1 (MQ=60)

                    GCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTG                                                                           <  SRR4302543.1128387/94‑1 (MQ=60)

                    GCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTG                                                                           >  SRR4302543.7270536/1‑94 (MQ=60)

                    GCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTG                                                                           >  SRR4302543.5082829/1‑94 (MQ=60)

                     CTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGA                                                                          >  SRR4302543.6363369/1‑94 (MQ=60)

                     CTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGA                                                                          >  SRR4302543.1930138/1‑94 (MQ=60)

                     CTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGA                                                                          >  SRR4302543.6363368/1‑94 (MQ=60)

                      TGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGAC                                                                         >  SRR4302543.6926586/1‑94 (MQ=60)

                      TGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGAC                                                                         >  SRR4302543.1247286/1‑94 (MQ=60)

                        ATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTA                                                                       >  SRR4302543.7630999/1‑94 (MQ=60)

                         acgATTTCGCGGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAA                                                                      <  SRR4302543.2228666/91‑1 (MQ=60)

                         TGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAA                                                                      <  SRR4302543.2228665/94‑1 (MQ=60)

                          GTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAAC                                                                     <  SRR4302543.3166887/94‑1 (MQ=60)

                          GTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAAC                                                                     >  SRR4302543.1127072/1‑94 (MQ=60)

                          GTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAAC                                                                     >  SRR4302543.7247213/1‑94 (MQ=60)

                          GTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAAC                                                                     >  SRR4302543.6633507/1‑94 (MQ=60)

                           TATTTCGCTGCGCAACAGACCCCTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACA                                                                    <  SRR4302543.4554179/94‑1 (MQ=60)

                            ATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTCACAG                                                                   >  SRR4302543.6664613/1‑94 (MQ=60)

                            ATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAG                                                                   <  SRR4302543.5691194/94‑1 (MQ=60)

                            ATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAG                                                                   <  SRR4302543.6222081/94‑1 (MQ=60)

                            ATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAG                                                                   >  SRR4302543.4485957/1‑94 (MQ=60)

                            ATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAG                                                                   >  SRR4302543.6664612/1‑94 (MQ=60)

                             TTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGC                                                                  <  SRR4302543.3708579/94‑1 (MQ=60)

                             TTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGC                                                                  <  SRR4302543.3708578/94‑1 (MQ=60)

                             TTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGC                                                                  <  SRR4302543.4349447/94‑1 (MQ=60)

                               TCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCAT                                                                <  SRR4302543.1569544/94‑1 (MQ=60)

                                 GCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCG                                                              <  SRR4302543.925426/94‑1 (MQ=60)

                                 GCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCG                                                              <  SRR4302543.2457876/94‑1 (MQ=60)

                                      GCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTT                                                         <  SRR4302543.5359535/94‑1 (MQ=60)

                                      GCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTT                                                         <  SRR4302543.5777110/94‑1 (MQ=60)

                                      GCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTT                                                         <  SRR4302543.1916871/94‑1 (MQ=60)

                                      GCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTT                                                         <  SRR4302543.6090833/94‑1 (MQ=60)

                                      GCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTT                                                         <  SRR4302543.4466384/94‑1 (MQ=60)

                                       CAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTG                                                        <  SRR4302543.2719982/94‑1 (MQ=60)

                                       CAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTG                                                        <  SRR4302543.5742359/94‑1 (MQ=60)

                                        AACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGC                                                       >  SRR4302543.1330276/1‑94 (MQ=60)

                                        AACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGC                                                       >  SRR4302543.1465264/1‑94 (MQ=60)

                                           AGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAA                                                    >  SRR4302543.4893221/1‑94 (MQ=60)

                                           AGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAA                                                    <  SRR4302543.7993587/94‑1 (MQ=60)

                                             GCCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACG                                                  <  SRR4302543.4047944/94‑1 (MQ=60)

                                             ACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACG                                                  <  SRR4302543.1090796/94‑1 (MQ=60)

                                             ACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACG                                                  >  SRR4302543.770628/1‑94 (MQ=60)

                                              CCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGT                                                 >  SRR4302543.2962031/1‑94 (MQ=60)

                                               CACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTG                                                <  SRR4302543.238290/94‑1 (MQ=60)

                                                     TGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGAT                                          <  SRR4302543.3286084/94‑1 (MQ=60)

                                                     TGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGAT                                          <  SRR4302543.1853538/94‑1 (MQ=60)

                                                        CGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTT                                       >  SRR4302543.1082305/1‑94 (MQ=60)

                                                         GGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTG                                      <  SRR4302543.892765/94‑1 (MQ=60)

                                                         GGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTG                                      <  SRR4302543.1067761/94‑1 (MQ=60)

                                                          GGTTCTTCCCGTTACTGCTGGCGTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGA                                     >  SRR4302543.1422240/1‑94 (MQ=60)

                                                          GGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGA                                     >  SRR4302543.1635264/1‑94 (MQ=60)

                                                           GTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAG                                    >  SRR4302543.5550716/1‑94 (MQ=60)

                                                           GTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCAGATGCCGACCATCGCTCTGACTAACAGCGTCGCTTGTGCCAACATGCCGGATGTTGAG                                    >  SRR4302543.6904498/1‑94 (MQ=60)

                                                            TTCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGC                                   <  SRR4302543.7452576/94‑1 (MQ=60)

                                                             TCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCG                                  >  SRR4302543.628267/1‑94 (MQ=60)

                                                             TCTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCG                                  <  SRR4302543.7026041/94‑1 (MQ=60)

                                                              CTTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGT                                 >  SRR4302543.6031817/1‑94 (MQ=60)

                                                               TTCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTG                                >  SRR4302543.1796686/1‑94 (MQ=60)

                                                                TCCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGA                               >  SRR4302543.647539/1‑94 (MQ=60)

                                                                 CCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGAT                              >  SRR4302543.3246328/1‑94 (MQ=60)

                                                                 CCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGAT                              >  SRR4302543.57675/1‑94 (MQ=60)

                                                                 CCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGAT                              >  SRR4302543.4086126/1‑94 (MQ=60)

                                                                 CCCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGAT                              <  SRR4302543.7471346/94‑1 (MQ=60)

                                                                  CCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATT                             <  SRR4302543.1660923/94‑1 (MQ=60)

                                                                  CCGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATT                             >  SRR4302543.3307895/1‑94 (MQ=60)

                                                                   CGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTT                            >  SRR4302543.4111791/1‑94 (MQ=60)

                                                                   CGTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTT                            >  SRR4302543.532857/1‑94 (MQ=60)

                                                                    GTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGCCTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTC                           <  SRR4302543.3983698/94‑1 (MQ=60)

                                                                    GTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTC                           >  SRR4302543.5405826/1‑94 (MQ=60)

                                                                    GTTACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTC                           >  SRR4302543.7410904/1‑94 (MQ=60)

                                                                       ACTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCG                        >  SRR4302543.5712611/1‑94 (MQ=60)

                                                                        CTGCTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGC                       <  SRR4302543.4489192/94‑1 (MQ=60)

                                                                           CTGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCA                    >  SRR4302543.6047126/1‑94 (MQ=60)

                                                                            TGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCAT                   <  SRR4302543.6738394/94‑1 (MQ=60)

                                                                            TGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCAT                   <  SRR4302543.165204/94‑1 (MQ=60)

                                                                            TGGCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCAT                   >  SRR4302543.3048243/1‑94 (MQ=60)

                                                                              GCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTC                 <  SRR4302543.6719991/94‑1 (MQ=60)

                                                                              GCCTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTC                 <  SRR4302543.6458172/94‑1 (MQ=60)

                                                                                CTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGT               >  SRR4302543.7627727/1‑94 (MQ=60)

                                                                                CTACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGT               >  SRR4302543.4749752/1‑94 (MQ=60)

                                                                                  ACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGT             >  SRR4302543.4668598/1‑94 (MQ=60)

                                                                                  ACTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGT             <  SRR4302543.1600136/94‑1 (MQ=60)

                                                                                   CTCGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTG            <  SRR4302543.1451313/94‑1 (MQ=60)

                                                                                     CGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGAT          <  SRR4302543.6961244/94‑1 (MQ=60)

                                                                                     CGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGAT          <  SRR4302543.3482434/94‑1 (MQ=60)

                                                                                     CGCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGAT          <  SRR4302543.6308445/94‑1 (MQ=60)

                                                                                      GCTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATG         <  SRR4302543.4934443/94‑1 (MQ=60)

                                                                                       CTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGG        >  SRR4302543.2583243/1‑94 (MQ=60)

                                                                                       CTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGG        >  SRR4302543.6404989/1‑94 (MQ=60)

                                                                                       CTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGG        >  SRR4302543.2757162/1‑94 (MQ=60)

                                                                                       CTAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGG        <  SRR4302543.2161107/94‑1 (MQ=60)

                                                                                        TAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGGG       >  SRR4302543.1840845/1‑94 (MQ=60)

                                                                                        TAACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGGG       <  SRR4302543.5002355/94‑1 (MQ=60)

                                                                                         AACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGGGC      >  SRR4302543.3331409/1‑94 (MQ=60)

                                                                                          ACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGGGCA     >  SRR4302543.6194035/1‑94 (MQ=60)

                                                                                          ACCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGGGCA     >  SRR4302543.6891769/1‑94 (MQ=60)

                                                                                           CCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTTATTTCCCGCGCATTCGTGTGATGGGCAC    <  SRR4302543.5366186/94‑1 (MQ=60)

                                                                                           CCCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTTATTTCCCGCGCATTCGTGTGATGGGCAC    <  SRR4302543.5366185/94‑1 (MQ=60)

                                                                                            CCATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGGGCACT   >  SRR4302543.4010385/1‑94 (MQ=60)

                                                                                             CATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGGGCACTA  >  SRR4302543.6762335/1‑94 (MQ=60)

TTGATGTTCGCAGGCGCGCTGCTGATGTATTTCGCTGCGCAACAGACCACTTTTGCCGGGTTCTTCCCGTTACTGCTGGCCTACTCGCTAACCTATATGCCGACCATTGCGCTGACTAACAGCATCGCTTTTGCCAACGTGCCGGATGTTGAGCGTGATTTCCCGCGCATTCGTGTGATGGGCACTA  >  NC_000913/2177060‑2177246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`