Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,201,450 |
A→G |
E1051G (GAG→GGG) |
yehI → |
putative regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,201,450 | 0 | A | G | 100.0%
| 368.4
/ NA
| 118 | E1051G (GAG→GGG) | yehI | putative regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (63/55); total (63/55) |
Only 100 of 129 total aligned reads displayed.
GTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGAGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGC > NC_000913/2201360‑2201539
|
gTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGt < 1:1269218/93‑1 (MQ=255)
gTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGt < 1:2256200/93‑1 (MQ=255)
gTCTGGGTACCCAGCGATTAATATGGGTGGTTTATCCAGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGt < 1:1481274/93‑1 (MQ=255)
tCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGtt > 2:2747264/1‑93 (MQ=255)
tCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGtt > 1:573171/1‑93 (MQ=255)
cTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTc < 2:1755395/93‑1 (MQ=255)
cTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTc < 1:431581/93‑1 (MQ=255)
tGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCt > 1:618954/1‑93 (MQ=255)
tGGTTACCCAGCGATTAATATGGGGGGTTTACCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCt < 2:1020782/93‑1 (MQ=255)
ggTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTg < 1:370747/93‑1 (MQ=255)
ggTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTg > 2:1318418/1‑93 (MQ=255)
ggTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTg < 1:1321556/93‑1 (MQ=255)
ggTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTGTCGTGTGGCCGCAGAGGGGGGGTTCTg < 1:1321557/93‑1 (MQ=255)
ttACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCa < 1:338415/93‑1 (MQ=255)
tACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCaa > 1:1129993/1‑93 (MQ=255)
ccAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATgc < 1:3729108/93‑1 (MQ=255)
ccAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATgc < 2:802973/93‑1 (MQ=255)
ccAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATgc > 1:4327778/1‑93 (MQ=255)
ccAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGCTCTGCAATgc > 2:3910833/1‑93 (MQ=255)
aGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATgcgc > 2:4363954/1‑93 (MQ=255)
gCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCa < 2:508880/93‑1 (MQ=255)
cGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCaa < 1:739071/93‑1 (MQ=255)
gATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAg < 1:2488530/93‑1 (MQ=255)
gATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAg < 2:381012/93‑1 (MQ=255)
gATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAg > 2:2190482/1‑93 (MQ=255)
gATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGATCTGCAACGCGCAAg > 2:2694566/1‑93 (MQ=255)
aTTAATATGGGGGTTTTATCCGGCAAATGGACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGa < 2:4310794/93‑1 (MQ=255)
aTTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGa > 1:4179526/1‑93 (MQ=255)
atatGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCGATGCGCAAGATGAg > 1:2071846/1‑93 (MQ=255)
tatGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGc > 1:759614/1‑93 (MQ=255)
atGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGcc < 2:2347219/93‑1 (MQ=255)
ggggggTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCGATGCGCAAGATGAGCCaa > 2:4307602/1‑93 (MQ=255)
ggggggTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGGTCTGCAATGCGCAAGATGAGCCaa > 1:2454177/1‑93 (MQ=255)
ggTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGa < 2:1104841/93‑1 (MQ=255)
gTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGAc > 1:2378272/1‑93 (MQ=255)
tttATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGAcc > 2:1344738/1‑93 (MQ=255)
aTCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGAcctgc > 1:3411771/1‑93 (MQ=255)
tCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCTCGATCAGCCACTTGAcctgcc > 1:4370610/1‑93 (MQ=255)
tCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGAcctgcc < 2:4211586/93‑1 (MQ=255)
ggCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACctgcctgc > 2:3134838/1‑93 (MQ=255)
gCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCg > 2:3946085/1‑93 (MQ=255)
aaaTGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGa > 2:18070/1‑93 (MQ=255)
aaaTGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGa > 1:2293549/1‑93 (MQ=255)
aaaTGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGa > 1:1974804/1‑93 (MQ=255)
aaaTGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGa > 2:220029/1‑93 (MQ=255)
aaTGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGAc > 1:1035370/1‑93 (MQ=255)
aTGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACg > 1:3550826/1‑93 (MQ=255)
tGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGc < 2:2019107/93‑1 (MQ=255)
tGAACCGCGTTGTTTACTCAAAGCCTCTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGc > 2:1740748/1‑93 (MQ=255)
gAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGct > 2:2951670/1‑93 (MQ=255)
aaCCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGctc < 2:1062216/93‑1 (MQ=255)
aaCCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGctc > 1:2957415/1‑93 (MQ=255)
gcgTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGAt > 1:1455860/1‑93 (MQ=255)
gcgTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGAt > 1:236205/1‑93 (MQ=255)
gcgTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGATCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGAt > 1:1585241/1‑93 (MQ=255)
cggttgttTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGAt < 2:721644/91‑1 (MQ=255)
gttgttTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTg > 2:561162/1‑93 (MQ=255)
ttgttTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTgg > 1:2805923/1‑93 (MQ=255)
ttgttTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTgg > 1:333442/1‑93 (MQ=255)
ttgttTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTgg > 1:945033/1‑93 (MQ=255)
tgttTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGc > 2:1846010/1‑93 (MQ=255)
gttTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCa > 1:2469520/1‑93 (MQ=255)
gttTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCa > 1:3124813/1‑93 (MQ=255)
tttACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCAt < 1:3903198/93‑1 (MQ=255)
tttACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCAt > 1:3048809/1‑93 (MQ=255)
ttACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCAtt < 2:3964039/93‑1 (MQ=255)
tACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTg < 2:2909683/93‑1 (MQ=255)
cTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGcc > 1:1152095/1‑93 (MQ=255)
cTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGcc > 1:28645/1‑93 (MQ=255)
tCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGCTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGccc > 2:1376455/1‑93 (MQ=255)
cAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCa < 2:3304259/93‑1 (MQ=255)
aaaGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCAc > 2:3145977/1‑93 (MQ=255)
aaGCCTTGCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGCACGCTCTGATTGGCATTGCCCGcc < 2:1066933/93‑1 (MQ=255)
aGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCAccc > 2:262066/1‑93 (MQ=255)
gCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCg < 1:4236535/93‑1 (MQ=255)
ccTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGt < 1:1077622/93‑1 (MQ=255)
cTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGtt < 1:544660/93‑1 (MQ=255)
cTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGtt > 2:4068370/1‑93 (MQ=255)
tttCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTa < 2:2082473/93‑1 (MQ=255)
tttCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTa > 2:4157831/1‑93 (MQ=255)
tttCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTa < 2:4191614/93‑1 (MQ=255)
tttCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTa < 1:2865650/93‑1 (MQ=255)
tCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGa > 2:3322897/1‑93 (MQ=255)
gtgtGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGaaa < 2:1785495/93‑1 (MQ=255)
tgGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGa < 1:2771989/93‑1 (MQ=255)
tgGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAAGTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGa > 1:3300557/1‑93 (MQ=255)
gCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAcagca < 2:2674615/93‑1 (MQ=255)
gCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAcagca < 1:1540305/93‑1 (MQ=255)
gCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAcagca < 1:4473419/93‑1 (MQ=255)
gCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAcagca < 2:556257/93‑1 (MQ=255)
gCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAcagca > 1:4000969/1‑93 (MQ=255)
cAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAcagcag > 2:2476831/1‑93 (MQ=255)
cAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAcagcag < 2:3726684/93‑1 (MQ=255)
agagGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGa < 1:3375667/93‑1 (MQ=255)
agGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGaaa < 1:3568344/93‑1 (MQ=255)
agGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGaaa < 2:3392416/93‑1 (MQ=255)
ggggggGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAAt < 1:4043023/93‑1 (MQ=255)
ggggggTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATg < 1:1953094/93‑1 (MQ=255)
ggggggTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATg > 2:814960/1‑93 (MQ=255)
ggggGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATgc < 2:4249767/93‑1 (MQ=255)
|
GTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGAGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGC > NC_000913/2201360‑2201539
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCGTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGAGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGCGCA > NC_000913/2201357‑2201542
|
CCCGTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGG > SRR4302535.2037913/1‑94 (MQ=60)
CGTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGT > SRR4302535.625785/1‑94 (MQ=60)
GTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTT > SRR4302535.961428/1‑94 (MQ=60)
GTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTT > SRR4302535.577193/1‑94 (MQ=60)
GTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTT < SRR4302535.2272263/94‑1 (MQ=60)
GTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTT < SRR4302535.1278289/94‑1 (MQ=60)
GTCTGGGTACCCAGCGATTAATATGGGTGGTTTATCCAGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTT < SRR4302535.1491866/94‑1 (MQ=60)
CTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCT > SRR4302535.623255/1‑94 (MQ=60)
CTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCT < SRR4302535.434587/94‑1 (MQ=60)
GGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGC < SRR4302535.1330991/94‑1 (MQ=60)
GGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGC < SRR4302535.373310/94‑1 (MQ=60)
GGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTGTCGTGTGGCCGCAGAGGGGGGGTTCTGC < SRR4302535.1330992/94‑1 (MQ=60)
TTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAA < SRR4302535.340757/94‑1 (MQ=60)
TTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAA > SRR4302535.1138060/1‑94 (MQ=60)
TCCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATG < SRR4302535.3988677/94‑1 (MQ=60)
CCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGC > SRR4302535.4357372/1‑94 (MQ=60)
CCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCG < SRR4302535.3754935/94‑1 (MQ=60)
CGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAG < SRR4302535.744268/94‑1 (MQ=60)
GATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGA > SRR4302535.4208132/1‑94 (MQ=60)
GATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGA < SRR4302535.2506478/94‑1 (MQ=60)
AATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCGATGCGCAAGATGAG > SRR4302535.2086775/1‑94 (MQ=60)
ATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGC > SRR4302535.764967/1‑94 (MQ=60)
TGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGGTCTGCAATGCGCAAGATGAGCCAA > SRR4302535.2471868/1‑94 (MQ=60)
GGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTG > SRR4302535.2456505/1‑94 (MQ=60)
GGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGAC > SRR4302535.2395352/1‑94 (MQ=60)
TATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGC > SRR4302535.3435509/1‑94 (MQ=60)
ATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCTCGATCAGCCACTTGACCTGCC > SRR4302535.4400518/1‑94 (MQ=60)
GGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCG < SRR4302535.2549983/94‑1 (MQ=60)
GGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCG < SRR4302535.1349614/94‑1 (MQ=60)
CAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGA > SRR4302535.2309955/1‑94 (MQ=60)
CAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGA > SRR4302535.1989027/1‑94 (MQ=60)
AAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGAC > SRR4302535.1042723/1‑94 (MQ=60)
AATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACG > SRR4302535.3575467/1‑94 (MQ=60)
GAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTC > SRR4302535.2978185/1‑94 (MQ=60)
CGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGAT > SRR4302535.1466281/1‑94 (MQ=60)
CGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGAT > SRR4302535.237835/1‑94 (MQ=60)
CGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGATCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGAT > SRR4302535.1596679/1‑94 (MQ=60)
GCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATT < SRR4302535.1262371/94‑1 (MQ=60)
GCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATT < SRR4302535.3423558/94‑1 (MQ=60)
GTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGG > SRR4302535.335750/1‑94 (MQ=60)
GTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGG > SRR4302535.2825871/1‑94 (MQ=60)
GTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGG > SRR4302535.951725/1‑94 (MQ=60)
TGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCA > SRR4302535.3146575/1‑94 (MQ=60)
TGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCA > SRR4302535.2487323/1‑94 (MQ=60)
GTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCAT > SRR4302535.3070167/1‑94 (MQ=60)
TTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATT > SRR4302535.2130497/1‑94 (MQ=60)
TTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATT < SRR4302535.3929936/94‑1 (MQ=60)
ACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCC > SRR4302535.1160323/1‑94 (MQ=60)
ACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCC > SRR4302535.28868/1‑94 (MQ=60)
GCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGT > SRR4302535.3159952/1‑94 (MQ=60)
GCCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGT < SRR4302535.4265529/94‑1 (MQ=60)
CCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTT > SRR4302535.430357/1‑94 (MQ=60)
CCTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTT < SRR4302535.1085290/94‑1 (MQ=60)
CTTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTA < SRR4302535.548466/94‑1 (MQ=60)
TTTCGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAG < SRR4302535.2885950/94‑1 (MQ=60)
CGTGTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAA < SRR4302535.2924252/94‑1 (MQ=60)
GTGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAAGTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGA > SRR4302535.3323509/1‑94 (MQ=60)
TGGCCGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAC < SRR4302535.2791729/94‑1 (MQ=60)
CGCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCA > SRR4302535.4028339/1‑94 (MQ=60)
GCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAG < SRR4302535.1551409/94‑1 (MQ=60)
GCAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAG < SRR4302535.4504116/94‑1 (MQ=60)
CAGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGA > SRR4302535.1880923/1‑94 (MQ=60)
AGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAA > SRR4302535.3686365/1‑94 (MQ=60)
AGAGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAA < SRR4302535.3399143/94‑1 (MQ=60)
AGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAAT < SRR4302535.3593087/94‑1 (MQ=60)
GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATG > SRR4302535.4406853/1‑94 (MQ=60)
GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATG < SRR4302535.4070700/94‑1 (MQ=60)
GGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGC < SRR4302535.1967152/94‑1 (MQ=60)
GGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGCG > SRR4302535.4247428/1‑94 (MQ=60)
GGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGCGCA < SRR4302535.3762912/94‑1 (MQ=60)
|
CCCGTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGAGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGCGCA > NC_000913/2201357‑2201542
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
