Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,201,450 |
A→G |
E1051G (GAG→GGG) |
yehI → |
putative regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,201,450 | 0 | A | G | 99.5%
| 596.3
/ ‑5.0
| 193 | E1051G (GAG→GGG) | yehI | putative regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (95/97); minor base T (0/1); total (95/98) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 |
Only 100 of 208 total aligned reads displayed.
GTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGA‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGC > NC_000913/2201360‑2201539
|
gTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑Gt < 1:3534311/93‑1 (MQ=255)
tCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑Gtt > 2:4789751/1‑93 (MQ=255)
tGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCt < 2:1968554/93‑1 (MQ=255)
ggTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCtc > 1:4085255/1‑92 (MQ=255)
ggTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GGTCTg > 1:6197830/1‑93 (MQ=255)
tACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCaa > 2:6708455/1‑93 (MQ=255)
aCCCAGCGATTAATATGGGGGGTTTATCCGGGAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGGGGTTCTGCaa < 2:1034741/93‑1 (MQ=255)
aCCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAAt < 2:2973388/93‑1 (MQ=255)
aCCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAAt < 2:7381675/93‑1 (MQ=255)
aCCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTGCTGCAAt > 2:1544489/1‑93 (MQ=255)
aCCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GGTCTggcat > 2:273443/1‑89 (MQ=255)
aGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATgcgc > 2:1831105/1‑93 (MQ=255)
aGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATgcgc > 2:3866146/1‑93 (MQ=255)
gATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAg > 1:6019031/1‑93 (MQ=255)
aTTAATAGGGGGGGTTTATCCGACAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGa < 1:5080064/93‑1 (MQ=255)
ttAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGAt > 2:3423280/1‑93 (MQ=255)
tAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGGGGTTCTGCAATGCGCAAGAt < 2:1169185/93‑1 (MQ=255)
aaTATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGa < 1:4692595/93‑1 (MQ=255)
atatGGGGGGTTTATCCGGCAAATGAGCCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAg < 1:2401226/93‑1 (MQ=255)
tatGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGc > 1:979161/1‑93 (MQ=255)
atGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGcc > 1:4006506/1‑93 (MQ=255)
ggggggTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCat > 1:3736234/1‑92 (MQ=255)
ggggggTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCaa < 2:470738/93‑1 (MQ=255)
ggggggTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCaa > 1:6195193/1‑93 (MQ=255)
gggggTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAAt < 2:7769174/93‑1 (MQ=255)
ggggTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAAtt < 1:4428944/93‑1 (MQ=255)
ggggTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAAtt > 2:7908659/1‑93 (MQ=255)
gggTTTATCCGGCAAATGAACCGGGTGGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTg < 2:3286744/93‑1 (MQ=255)
ggTTTATCCGGCAAATGAAGCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAAGGGGG‑GTTCTGCAATGCGCAAGATGATGCAAttta > 2:7396316/1‑91 (MQ=255)
gTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGAc < 2:3005938/93‑1 (MQ=255)
tttATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGAcc < 2:2780672/93‑1 (MQ=255)
tCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGAcctgcc < 2:2084389/93‑1 (MQ=255)
tCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGAcctgcc < 2:7683399/93‑1 (MQ=255)
ccGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGAcctgcct < 2:857360/93‑1 (MQ=255)
ccGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGAcctgcct > 1:2195189/1‑93 (MQ=255)
cGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGAcctgcctg > 1:4507096/1‑93 (MQ=255)
ggCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACctgcctgc < 1:5570216/93‑1 (MQ=255)
gCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCg > 2:5312968/1‑93 (MQ=255)
aaTGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGAc > 2:2385104/1‑93 (MQ=255)
aaTGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGAc > 1:4255851/1‑93 (MQ=255)
aaTGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGAc > 2:3200552/1‑93 (MQ=255)
aaTGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGAc > 1:2990998/1‑93 (MQ=255)
aTGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACg > 1:2815382/1‑93 (MQ=255)
gAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGct > 2:7281026/1‑93 (MQ=255)
aaCCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGctc < 1:738440/93‑1 (MQ=255)
aCCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGctct < 2:7748214/93‑1 (MQ=255)
aCCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGctct > 1:6426588/1‑93 (MQ=255)
ccGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTg > 2:2885243/1‑93 (MQ=255)
cgcgTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGa < 1:104071/93‑1 (MQ=255)
gcgTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGAt > 1:7836140/1‑93 (MQ=255)
gcgTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGAt > 1:7538547/1‑93 (MQ=255)
gttgttTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCTTGCGGACGCTCTGATTg > 1:6596855/1‑93 (MQ=255)
gttgttTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTg < 2:5589567/93‑1 (MQ=255)
ttgttTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTgg < 1:108543/93‑1 (MQ=255)
ttgttTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTgg > 2:2432020/1‑93 (MQ=255)
ttgttTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTgg > 1:3585417/1‑93 (MQ=255)
ttgttTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GGTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTgg > 2:6805188/1‑93 (MQ=255)
tgttTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGc > 2:4854261/1‑93 (MQ=255)
gttTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCa > 1:4638093/1‑93 (MQ=255)
gttTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCa < 1:437672/93‑1 (MQ=255)
ttttCTCAAAAGCCTTCGTGTGGGCCGAAGGGGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGc < 2:3090188/93‑1 (MQ=255)
tttACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCAt < 1:1651856/93‑1 (MQ=255)
tACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTg < 2:3140932/93‑1 (MQ=255)
cTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGcc > 1:4469811/1‑93 (MQ=255)
cTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGcc < 1:7641493/93‑1 (MQ=255)
tCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGccc < 2:3069288/93‑1 (MQ=255)
tCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGccc > 2:336929/1‑93 (MQ=255)
tCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGccc > 1:7283876/1‑93 (MQ=255)
tCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGccc > 2:4514426/1‑93 (MQ=255)
cAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCa > 2:566407/1‑93 (MQ=255)
aaaGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCAc > 1:1133943/1‑93 (MQ=255)
aaGCCTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCAcc > 2:3674171/1‑93 (MQ=255)
cTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGtt > 1:1835746/1‑93 (MQ=255)
cTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGtt < 1:7917368/93‑1 (MQ=255)
cTTTCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGtt < 2:4668312/93‑1 (MQ=255)
tttCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTa > 1:100947/1‑93 (MQ=255)
tttCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTa < 1:5377721/93‑1 (MQ=255)
ttCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACTCTCTGATTGGCATTGCCCACCCGTTAg < 2:1470242/93‑1 (MQ=255)
ttCGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAg < 1:200137/93‑1 (MQ=255)
cGTGT‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGaa < 2:4898763/93‑1 (MQ=255)
gtgt‑GGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGaaa < 1:7802764/93‑1 (MQ=255)
tgt‑gGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAAt < 1:5285462/93‑1 (MQ=255)
tggggCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAAt < 2:6967732/90‑1 (MQ=255)
t‑gGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGa < 2:5437518/93‑1 (MQ=255)
t‑gGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGa > 2:4209585/1‑93 (MQ=255)
t‑gGCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGa < 1:1468410/93‑1 (MQ=255)
ggCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAc < 2:6312221/93‑1 (MQ=255)
gCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAca < 2:2238906/93‑1 (MQ=255)
gCCGCA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAca > 2:7458754/1‑93 (MQ=255)
cA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGTCAATTGCCCTGCCTGCGGCCGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAcagcag < 1:6708456/93‑1 (MQ=255)
cA‑GAGGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAcagcag < 2:5235105/93‑1 (MQ=255)
a‑gagGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGa < 1:6259728/93‑1 (MQ=255)
gagGGGGG‑GTTCTGCAATGCTCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGaa > 2:6262054/1‑93 (MQ=255)
gagGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGaa > 2:5061430/1‑93 (MQ=255)
gagGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGaa < 1:6840865/93‑1 (MQ=255)
gagGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGaa > 1:2319280/1‑93 (MQ=255)
agGGGGG‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGaaa < 1:7094758/93‑1 (MQ=255)
gggggg‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAAt < 2:2344505/93‑1 (MQ=255)
ggggg‑gTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATg < 2:3821063/93‑1 (MQ=255)
ggggg‑gTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATg < 1:4899164/93‑1 (MQ=255)
|
GTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGT‑GGCCGCA‑GAGGGGGA‑GTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGC > NC_000913/2201360‑2201539
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCGTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGAGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGCGCAG > NC_000913/2201357‑2201543
|
CCCGTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGG < SRR4302543.6669062/94‑1 (MQ=60)
CCGTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGG > SRR4302543.7865885/1‑94 (MQ=60)
CCGTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGG < SRR4302543.377009/94‑1 (MQ=60)
CCGTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGG < SRR4302543.5881290/94‑1 (MQ=60)
CGTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGT > SRR4302543.1898086/1‑94 (MQ=60)
GTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTT < SRR4302543.3565760/94‑1 (MQ=60)
CTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCT < SRR4302543.6255271/94‑1 (MQ=60)
TGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTG > SRR4302543.4121881/1‑94 (MQ=60)
TGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTC > SRR4302543.4121883/1‑94 (MQ=60)
TGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGGTCTG > SRR4302543.6256369/1‑94 (MQ=60)
GGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGC > SRR4302543.460641/1‑94 (MQ=60)
ACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATG < SRR4302543.7332653/94‑1 (MQ=60)
ACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATG < SRR4302543.4917255/94‑1 (MQ=60)
GCGATTAATATGGGGGTTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAA < SRR4302543.90351/94‑1 (MQ=60)
CGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAG > SRR4302543.6074792/1‑94 (MQ=60)
CGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAG < SRR4302543.6597998/94‑1 (MQ=60)
ATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGAT > SRR4302543.4470645/1‑94 (MQ=60)
ATTAATAGGGGGGGTTTATCCGACAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGAT < SRR4302543.5126142/94‑1 (MQ=60)
AATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTAGTCAAAGCCTTTCGGGTGGCCGCAGA‑GGGGGGGTTCTGAAATGCTCAAGGTGAG > SRR4302543.4223740/1‑94 (MQ=60)
AATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAG < SRR4302543.4735442/94‑1 (MQ=60)
ATATGGGGGGTTTATCCGGCAAATGAGCCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGC < SRR4302543.2422939/94‑1 (MQ=60)
ATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGC > SRR4302543.987802/1‑94 (MQ=60)
TATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCC < SRR4302543.7890935/94‑1 (MQ=60)
TATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCC > SRR4302543.4042264/1‑94 (MQ=60)
TGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAT > SRR4302543.3769100/1‑94 (MQ=60)
TGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAA < SRR4302543.2076254/94‑1 (MQ=60)
TGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAA > SRR4302543.6253715/1‑94 (MQ=60)
GGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTG < SRR4302543.4469069/94‑1 (MQ=60)
GGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTG < SRR4302543.3085806/94‑1 (MQ=60)
GGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTG > SRR4302543.5501514/1‑94 (MQ=60)
GGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTG > SRR4302543.2416843/1‑94 (MQ=60)
GCGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCCATTGA < SRR4302543.5357283/94‑1 (MQ=60)
TTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCT < SRR4302543.2760036/94‑1 (MQ=60)
TTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCT < SRR4302543.4832245/94‑1 (MQ=60)
TCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCT > SRR4302543.2214914/1‑94 (MQ=60)
TCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCT > SRR4302543.795331/1‑94 (MQ=60)
CCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTG > SRR4302543.4123180/1‑94 (MQ=60)
CCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTG > SRR4302543.4548077/1‑94 (MQ=60)
CCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTG > SRR4302543.2899865/1‑94 (MQ=60)
CGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGAGGGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTG > SRR4302543.1495490/1‑94 (MQ=60)
CGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGC < SRR4302543.6712357/94‑1 (MQ=60)
GGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCG < SRR4302543.5620903/94‑1 (MQ=60)
GGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCG < SRR4302543.6462827/94‑1 (MQ=60)
GCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGG < SRR4302543.5770958/94‑1 (MQ=60)
CAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGA > SRR4302543.3844749/1‑94 (MQ=60)
AAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGAC > SRR4302543.3018152/1‑94 (MQ=60)
AAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGAC > SRR4302543.4294487/1‑94 (MQ=60)
AATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACG > SRR4302543.2841168/1‑94 (MQ=60)
GAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTC > SRR4302543.7476516/1‑94 (MQ=60)
GAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTC > SRR4302543.3662217/1‑94 (MQ=60)
AACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCT < SRR4302543.745048/94‑1 (MQ=60)
AACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCT > SRR4302543.6487144/1‑94 (MQ=60)
CGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGAT < SRR4302543.105030/94‑1 (MQ=60)
CGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGAT > SRR4302543.7909902/1‑94 (MQ=60)
CGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGAT > SRR4302543.7610409/1‑94 (MQ=60)
CGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCTTGCGGACGCTCTGATTG > SRR4302543.6659022/1‑94 (MQ=60)
CGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTG > SRR4302543.1035345/1‑94 (MQ=60)
CGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTG < SRR4302543.3260674/94‑1 (MQ=60)
GTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGG > SRR4302543.3617089/1‑94 (MQ=60)
TTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGC < SRR4302543.109534/94‑1 (MQ=60)
TGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCA > SRR4302543.4680275/1‑94 (MQ=60)
TGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCA > SRR4302543.4680274/1‑94 (MQ=60)
GTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCAT < SRR4302543.441773/94‑1 (MQ=60)
TTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATT < SRR4302543.1666632/94‑1 (MQ=60)
TACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGC > SRR4302543.1067143/1‑94 (MQ=60)
ACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCC > SRR4302543.4510343/1‑94 (MQ=60)
ACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCC > SRR4302543.4510342/1‑94 (MQ=60)
CTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCC > SRR4302543.7354208/1‑94 (MQ=60)
CTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCC < SRR4302543.7713974/94‑1 (MQ=60)
CTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCC > SRR4302543.6168998/1‑94 (MQ=60)
CAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCAC < SRR4302543.7153941/94‑1 (MQ=60)
CAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCAC > SRR4302543.1144241/1‑94 (MQ=60)
AAAGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACC > SRR4302543.7626290/1‑94 (MQ=60)
AGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGGGGACGCTCTAATTGGCtttcccccccct > SRR4302543.7869003/1‑82 (MQ=60)
AGCCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCG > SRR4302543.4303658/1‑94 (MQ=60)
CCTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTT > SRR4302543.1852273/1‑94 (MQ=60)
CTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTA < SRR4302543.7991744/94‑1 (MQ=60)
CTTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTA > SRR4302543.101884/1‑94 (MQ=60)
TTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAG < SRR4302543.4460258/94‑1 (MQ=60)
TTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAG < SRR4302543.1735510/94‑1 (MQ=60)
TTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAG < SRR4302543.5093991/94‑1 (MQ=60)
TTTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAG < SRR4302543.5426462/94‑1 (MQ=60)
TTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGA < SRR4302543.3573748/94‑1 (MQ=60)
TTCGTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGA < SRR4302543.201823/94‑1 (MQ=60)
GTGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAAT < SRR4302543.7876317/94‑1 (MQ=60)
TGTGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATG < SRR4302543.5333166/94‑1 (MQ=60)
TGGCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGAC < SRR4302543.1481639/94‑1 (MQ=60)
GCCGCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAG < SRR4302543.5264395/94‑1 (MQ=60)
GCAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAG > SRR4302543.2295064/1‑94 (MQ=60)
CAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGTCAATTGCCCTGCCTGCGGCCGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGA < SRR4302543.6771802/94‑1 (MQ=60)
CAGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGA < SRR4302543.1099253/94‑1 (MQ=60)
AGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAA > SRR4302543.2340363/1‑94 (MQ=60)
AGA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAA < SRR4302543.6318770/94‑1 (MQ=60)
GA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAA > SRR4302543.7126828/1‑94 (MQ=60)
GA‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAA < SRR4302543.6905432/94‑1 (MQ=60)
A‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAAT > SRR4302543.7376637/1‑94 (MQ=60)
A‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAAT < SRR4302543.7163652/94‑1 (MQ=60)
A‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAAT > SRR4302543.6870204/1‑94 (MQ=60)
A‑GGGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAAT < SRR4302543.1460803/94‑1 (MQ=60)
GGGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGC < SRR4302543.4943822/94‑1 (MQ=60)
GGGGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGCG < SRR4302543.6317558/94‑1 (MQ=60)
GGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGCGCA > SRR4302543.4834685/1‑94 (MQ=60)
GGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGCGCA > SRR4302543.7718946/1‑94 (MQ=60)
GGGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGCGCA > SRR4302543.4834684/1‑94 (MQ=60)
GGTTCTGCAATGCGCAAGATGAGCCAATTGCCCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGCGCAG < SRR4302543.1479877/94‑1 (MQ=60)
GGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGCGCAG > SRR4302543.2171860/1‑94 (MQ=60)
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CCCGTCTGGTTACCCAGCGATTAATATGGGGGGTTTATCCGGCAAATGAACCGCGTTGTTTACTCAAAGCCTTTCGTGTGGCCGCAGA‑GGGGGAGTTCTGCAATGCGCAAGATGAGCCAATTGACCTGCCTGCGGACGCTCTGATTGGCATTGCCCACCCGTTAGAAATGACAGCAGAAATGCGCAG > NC_000913/2201357‑2201543
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
