Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,208,197 |
A→C |
T360P (ACC→CCC) |
b2122 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,208,197 | 0 | A | C | 99.2%
| 371.8
/ NA
| 119 | T360P (ACC→CCC) | b2122 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (76/42); minor base T (1/0); total (77/42) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 130 total aligned reads displayed.
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTG > NC_000913/2208107‑2208286
|
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTccc > 2:1914282/1‑93 (MQ=255)
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTccc > 2:2266975/1‑93 (MQ=255)
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTccc < 1:1953866/93‑1 (MQ=255)
gaAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGAt > 2:2291147/1‑93 (MQ=255)
gaAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGAt > 2:4670454/1‑93 (MQ=255)
aGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATcc > 2:53640/1‑93 (MQ=255)
gCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATccc > 2:2829831/1‑93 (MQ=255)
cAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCg > 2:2514790/1‑93 (MQ=255)
aaaGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTtcccgatcccga > 1:303819/1‑93 (MQ=255)
aaaGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTtcccgatcccga < 1:2375961/93‑1 (MQ=255)
aaGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGac > 1:1286749/1‑93 (MQ=255)
aGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGaca > 2:3267067/1‑93 (MQ=255)
aGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGaca > 2:4038233/1‑93 (MQ=255)
aGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGaca > 2:605146/1‑93 (MQ=255)
gCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGacac < 2:2792703/93‑1 (MQ=255)
cTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACAcc < 2:141874/93‑1 (MQ=255)
ttGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCg > 2:1524041/1‑93 (MQ=255)
ttGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCg > 1:3145099/1‑93 (MQ=255)
gATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGc > 2:3956928/1‑93 (MQ=255)
gATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGc > 2:922134/1‑93 (MQ=255)
tcatcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAg > 1:703569/1‑93 (MQ=255)
catcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGt < 2:1263225/93‑1 (MQ=255)
catcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGt > 1:1527786/1‑93 (MQ=255)
cTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAtt < 2:3672231/93‑1 (MQ=255)
cTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAtt < 2:4663291/93‑1 (MQ=255)
cTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAtt < 1:3950217/93‑1 (MQ=255)
tGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAttt > 1:4573446/1‑93 (MQ=255)
tGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAttt > 2:86212/1‑93 (MQ=255)
gCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAtttt < 1:1327718/93‑1 (MQ=255)
ggTGTCTTTAGGTATGCGTTGCTAGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCt < 1:654490/93‑1 (MQ=255)
gtgtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCtt > 1:3575389/1‑93 (MQ=255)
tgtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCttt < 1:3029641/93‑1 (MQ=255)
tgtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCttt < 1:3869784/93‑1 (MQ=255)
gtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATCGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTc > 2:1989154/1‑93 (MQ=255)
tCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCTGATCCCGACACCGGCAGTATTTTGCACCTTTcg < 2:3392952/93‑1 (MQ=255)
cTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgc > 2:1052099/1‑93 (MQ=255)
tttAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgcg > 2:636751/1‑93 (MQ=255)
tttAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgcg > 2:2901413/1‑93 (MQ=255)
tAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCa < 1:635318/93‑1 (MQ=255)
ggTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGt > 1:247949/1‑93 (MQ=255)
ggTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGt < 2:3715690/93‑1 (MQ=255)
gTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGtt > 1:2749196/1‑93 (MQ=255)
tATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTg > 1:3199707/1‑93 (MQ=255)
tATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTg > 1:2785375/1‑93 (MQ=255)
tATGCGTTGCTGGCAGGATATTGAGCATTATGGGTTACGCATCTGGTTTTCCGATACCGACACCGGCAGTATTTTGCACCTTTCACGCAGTTg > 2:1584919/1‑93 (MQ=255)
aTGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGtttg > 2:2636371/1‑91 (MQ=255)
aTGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTgg > 2:3369686/1‑93 (MQ=255)
tGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGc > 1:117805/1‑93 (MQ=255)
gTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCcgc > 1:4309552/1‑93 (MQ=255)
gTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCcgc > 1:3451720/1‑93 (MQ=255)
tGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGa < 2:745096/93‑1 (MQ=255)
tGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGt > 1:2568027/1‑93 (MQ=255)
gCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGa > 1:1620598/1‑93 (MQ=255)
aGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAAc < 2:1511155/93‑1 (MQ=255)
ggATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACa > 2:1288605/1‑93 (MQ=255)
ggATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACa < 2:3868365/93‑1 (MQ=255)
tatTGAGCATTATGGTTTACGCATCTGGTTTCCCGGTCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCCAAGTGAACAGGa > 2:887384/1‑93 (MQ=255)
tatTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGa > 1:3653734/1‑93 (MQ=255)
tatTGAGCATTACGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGa > 1:313669/1‑93 (MQ=255)
tatTAAGCATTATAGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGa < 1:411579/93‑1 (MQ=255)
atTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGCTGGCCGCGAAGTGAACAGGaa > 2:244291/1‑93 (MQ=255)
ttGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGaaa > 1:1437608/1‑93 (MQ=255)
ttGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGaaa > 1:3849848/1‑93 (MQ=255)
tGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGaaaa < 2:257101/93‑1 (MQ=255)
tGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCCCGAGGGGAACAGGaaaa > 1:322778/1‑93 (MQ=255)
aGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACt < 1:3908638/93‑1 (MQ=255)
gCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTc > 1:4021894/1‑93 (MQ=255)
cATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCa > 2:3828115/1‑93 (MQ=255)
cATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATCTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCa < 1:3039436/93‑1 (MQ=255)
aTTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAc < 2:2456914/93‑1 (MQ=255)
aTTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAc < 1:1032066/93‑1 (MQ=255)
aTTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAc > 2:4531670/1‑93 (MQ=255)
ttATGGTTTACGCATCTGGTTTCCCGATCCCGGCACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAcc > 2:1433190/1‑93 (MQ=255)
ttATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAcc < 1:3619432/93‑1 (MQ=255)
ttATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAcc > 2:4632171/1‑93 (MQ=255)
ttATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAcc > 1:2878028/1‑93 (MQ=255)
tATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGCAGTGCACAGGAAAACTCACCg > 2:1165857/1‑93 (MQ=255)
tATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCg > 2:752230/1‑93 (MQ=255)
tttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGGACCTTTCGCGCAGCTGGCCGCGAAGTGAACAAGAAAACTCACCGGCAGc > 1:824962/1‑93 (MQ=255)
tttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGc > 2:2573565/1‑93 (MQ=255)
tttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGc > 2:286/1‑93 (MQ=255)
tACGCATCTGGTTTCCCGCTCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTa < 1:2140632/93‑1 (MQ=255)
tACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTa > 2:3602996/1‑93 (MQ=255)
aCGCATCTGGTTTCCCGAGCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAc < 2:3094914/93‑1 (MQ=255)
aCGCATCTAGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAAATCACCGGCAGCTAc > 2:4560451/1‑93 (MQ=255)
gCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAcgc > 1:3347913/1‑93 (MQ=255)
cATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAcgcg > 2:2822836/1‑93 (MQ=255)
cATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAcgcg > 2:2006159/1‑93 (MQ=255)
cATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAcgcg > 2:3073029/1‑93 (MQ=255)
aTCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGt < 1:2243683/93‑1 (MQ=255)
aTCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCACAGTTCGCCGCGAAGTGAACAGGAAAAATCAGCGGCAGCTAcgcgc > 2:3157927/1‑92 (MQ=255)
aTCTGGCTTCCCGATCCCGACACCGGCAGGATTTTGTACCTTTCGCGCAGTTCCCCGCGTAGTGACCAGCAAAACTCACCGGCAGCTACGCGt > 2:3038540/1‑93 (MQ=255)
tCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTc < 1:2881056/93‑1 (MQ=255)
tCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTAGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAcgcggc > 1:2510131/1‑91 (MQ=255)
tGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCgg > 1:3446352/1‑93 (MQ=255)
tGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCgg > 1:3339663/1‑93 (MQ=255)
gTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCt < 1:2650309/93‑1 (MQ=255)
tttCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTg > 1:97953/1‑93 (MQ=255)
tttCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTg > 1:2848567/1‑93 (MQ=255)
tttCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTg > 1:2921380/1‑93 (MQ=255)
|
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTG > NC_000913/2208107‑2208286
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTA > NC_000913/2208107‑2208290
|
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCG < SRR4302535.142560/94‑1 (MQ=60)
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCG < SRR4302535.1967928/94‑1 (MQ=60)
CAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGA > SRR4302535.305927/1‑94 (MQ=60)
AAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGAC < SRR4302535.2393030/94‑1 (MQ=60)
AAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGAC > SRR4302535.1295917/1‑94 (MQ=60)
GCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTGCGCATCTGGTTTCCCGATCCCGACACC < SRR4302535.644748/94‑1 (MQ=60)
CTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCG > SRR4302535.3166971/1‑94 (MQ=60)
ATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAG > SRR4302535.3935206/1‑94 (MQ=60)
ATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAG > SRR4302535.708503/1‑94 (MQ=60)
TCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGT > SRR4302535.1538792/1‑94 (MQ=60)
CTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTT < SRR4302535.3977186/94‑1 (MQ=60)
CTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTT > SRR4302535.4604621/1‑94 (MQ=60)
GCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTG < SRR4302535.1337192/94‑1 (MQ=60)
CTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACC > SRR4302535.1784559/1‑94 (MQ=60)
GGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTT > SRR4302535.3600176/1‑94 (MQ=60)
GGTGTCTTTAGGTATGCGTTGCTAGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTT < SRR4302535.659060/94‑1 (MQ=60)
TGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTC < SRR4302535.3896382/94‑1 (MQ=60)
TGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTC < SRR4302535.3050849/94‑1 (MQ=60)
TTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCA > SRR4302535.3429128/1‑94 (MQ=60)
TAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAG < SRR4302535.639746/94‑1 (MQ=60)
AGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGT > SRR4302535.249652/1‑94 (MQ=60)
AGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGT > SRR4302535.3656623/1‑94 (MQ=60)
GGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTT > SRR4302535.2768795/1‑94 (MQ=60)
GTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTG > SRR4302535.3221859/1‑94 (MQ=60)
GTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTG > SRR4302535.2805195/1‑94 (MQ=60)
ATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGC > SRR4302535.118632/1‑94 (MQ=60)
TGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCC > SRR4302535.261008/1‑94 (MQ=60)
CGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGC > SRR4302535.4339034/1‑94 (MQ=60)
CGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGC > SRR4302535.3475712/1‑94 (MQ=60)
GTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCG < SRR4302535.4115392/94‑1 (MQ=60)
GCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCTGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAG < SRR4302535.2078140/94‑1 (MQ=60)
GCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAG > SRR4302535.2920417/1‑94 (MQ=60)
CTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGT > SRR4302535.2586499/1‑94 (MQ=60)
GGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGA > SRR4302535.1632290/1‑94 (MQ=60)
ATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGA > SRR4302535.3679031/1‑94 (MQ=60)
ATATTGAGCATTACGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGA > SRR4302535.315840/1‑94 (MQ=60)
TATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAA > SRR4302535.3228893/1‑94 (MQ=60)
TATTAAGCATTATAGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAA < SRR4302535.414469/94‑1 (MQ=60)
ATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAA > SRR4302535.3876341/1‑94 (MQ=60)
ATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAA > SRR4302535.1447882/1‑94 (MQ=60)
TTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCCCGAGGGGAACAGGAAAA > SRR4302535.325010/1‑94 (MQ=60)
AGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTC < SRR4302535.3935409/94‑1 (MQ=60)
AGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTC > SRR4302535.4049414/1‑94 (MQ=60)
CATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATCTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAC < SRR4302535.3060723/94‑1 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACC < SRR4302535.1039396/94‑1 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACC > SRR4302535.2898409/1‑94 (MQ=60)
TTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCG < SRR4302535.3644524/94‑1 (MQ=60)
TATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGG < SRR4302535.846351/94‑1 (MQ=60)
GTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGGACCTTTCGCGCAGCTGGCCGCGAAGTGAACAAGAAAACTCACCGGCAGC > SRR4302535.830745/1‑94 (MQ=60)
TTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCT < SRR4302535.2813693/94‑1 (MQ=60)
TACGCATCTGGTTTCCCGCTCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAC < SRR4302535.2156042/94‑1 (MQ=60)
TACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAC < SRR4302535.3101201/94‑1 (MQ=60)
CGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGC > SRR4302535.3371234/1‑94 (MQ=60)
CATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGT > SRR4302535.2380774/1‑94 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC < SRR4302535.2259638/94‑1 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTAGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGGC > SRR4302535.2528225/1‑94 (MQ=60)
TCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCG < SRR4302535.2901448/94‑1 (MQ=60)
CTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGG > SRR4302535.3470319/1‑94 (MQ=60)
CTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGG > SRR4302535.3362931/1‑94 (MQ=60)
GTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTG > SRR4302535.2941989/1‑94 (MQ=60)
GTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTG > SRR4302535.2868753/1‑94 (MQ=60)
GTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTG < SRR4302535.2669285/94‑1 (MQ=60)
GTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTG > SRR4302535.98646/1‑94 (MQ=60)
TTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTT > SRR4302535.467108/1‑94 (MQ=60)
TCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTT < SRR4302535.1872795/94‑1 (MQ=60)
CCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTA < SRR4302535.2640425/94‑1 (MQ=60)
|
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTA > NC_000913/2208107‑2208290
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
