Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,208,197 |
A→C |
T360P (ACC→CCC) |
b2122 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,208,197 | 0 | A | C | 99.5%
| 671.3
/ ‑5.4
| 213 | T360P (ACC→CCC) | b2122 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (114/98); minor base G (1/0); total (115/98) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
Only 100 of 229 total aligned reads displayed.
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTG > NC_000913/2208107‑2208286
|
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTccc > 1:1146294/1‑93 (MQ=255)
ggAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTccc < 2:7440545/93‑1 (MQ=255)
gagaAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCg < 1:7745174/93‑1 (MQ=255)
agaAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGa < 1:768681/93‑1 (MQ=255)
agaAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGa < 2:6016181/93‑1 (MQ=255)
aGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATcc > 1:3172586/1‑93 (MQ=255)
gCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATATGGTTTCCCGATccc > 1:4081934/1‑93 (MQ=255)
aaaGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTtcccgatcccga < 2:3331460/93‑1 (MQ=255)
aaaGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTtcccgatcccga < 2:2247825/93‑1 (MQ=255)
aaaGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTtcccgatcccga > 1:2776401/1‑93 (MQ=255)
aGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGaca > 2:3982744/1‑93 (MQ=255)
aGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGaca < 2:6907524/93‑1 (MQ=255)
tGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCgg > 1:7755866/1‑93 (MQ=255)
tGATCATCTGCGGCTGGGGTCTTTAGGTATGCGTTGCTGGCAGGGTATTGAGCATTATGGGTTATGCATCTGGTTTCCCGATCCCGACACCgg > 1:2740915/1‑93 (MQ=255)
gATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGc < 2:2165322/93‑1 (MQ=255)
atcatcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCa > 2:4768559/1‑93 (MQ=255)
atcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTa > 1:1326215/1‑93 (MQ=255)
atcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTa > 1:7533709/1‑93 (MQ=255)
tcTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAt < 1:2460133/93‑1 (MQ=255)
tGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAttt > 2:5498702/1‑93 (MQ=255)
tGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTAttt < 2:3012600/93‑1 (MQ=255)
ggCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGc > 2:2515837/1‑93 (MQ=255)
ggCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGc > 1:7408232/1‑93 (MQ=255)
gCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCa < 1:1915822/93‑1 (MQ=255)
gCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCa > 2:2055197/1‑93 (MQ=255)
tGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCAcc < 2:3292390/93‑1 (MQ=255)
tGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCAcc > 2:3808093/1‑93 (MQ=255)
tGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCAcc < 2:1672835/93‑1 (MQ=255)
ggTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCt < 2:2805148/93‑1 (MQ=255)
ggTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCt < 2:4132163/93‑1 (MQ=255)
ggTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCt > 2:4939785/1‑93 (MQ=255)
ggTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCt < 2:7709922/93‑1 (MQ=255)
ggTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCt > 2:7328807/1‑93 (MQ=255)
ggTGACTTTAGATATGCGTTGCTGGCAGGATATTGAGCTTTATGGTTTACGCATCTGGTTTCCCGATACCGACACCGGCAGTATTTTGcgcat < 2:6999449/93‑5 (MQ=255)
gtgtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCtt > 1:1783750/1‑93 (MQ=255)
gtgtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCtt > 1:5781146/1‑93 (MQ=255)
gtCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTc < 1:580471/93‑1 (MQ=255)
tCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcg < 2:6870807/93‑1 (MQ=255)
tCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcg > 1:7363549/1‑93 (MQ=255)
cTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgc < 2:5645923/93‑1 (MQ=255)
tttAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTcgcg > 1:1752573/1‑93 (MQ=255)
ttAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCgcgc > 1:3732463/1‑93 (MQ=255)
tAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCa < 2:5253276/93‑1 (MQ=255)
tAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCa > 1:2039394/1‑93 (MQ=255)
aGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAg > 2:3486943/1‑93 (MQ=255)
aGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAg > 1:290283/1‑93 (MQ=255)
gTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGtt < 1:7895848/93‑1 (MQ=255)
gTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGtt < 2:7074751/93‑1 (MQ=255)
tATGCGTTGCTGGCAGAATATTGAGCATTATGGTTTACGGATCTGGTTGCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCTCAGGTg < 2:5608339/93‑1 (MQ=255)
aTGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTgg > 2:3054928/1‑93 (MQ=255)
tGCGTTGGTGGCAGTATATTGAGCATTAGTGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCGCCTTTCGCGCAGTTGGc < 2:544610/93‑1 (MQ=255)
tGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGc < 2:4288293/93‑1 (MQ=255)
tGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGc < 1:2697486/93‑1 (MQ=255)
tGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGc > 2:6774927/1‑93 (MQ=255)
tGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGc > 2:6592258/1‑93 (MQ=255)
gCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGcc > 2:4660828/1‑93 (MQ=255)
gCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGcc < 1:1563037/93‑1 (MQ=255)
gTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCcgc > 1:5370581/1‑93 (MQ=255)
gCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGaa < 1:1504673/93‑1 (MQ=255)
ggCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTg > 1:7058056/1‑93 (MQ=255)
ggCAGGATATTGAGCATTATGGTTGACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTg < 2:4456183/93‑1 (MQ=255)
cAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGaa < 2:6202193/93‑1 (MQ=255)
aGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAAc > 2:4925582/1‑93 (MQ=255)
aGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAAc > 2:6291713/1‑93 (MQ=255)
ggATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACa > 2:1495184/1‑93 (MQ=255)
gATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAg > 2:4195878/1‑93 (MQ=255)
gtatTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAgg < 1:6013920/92‑1 (MQ=255)
atatTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCATTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAgg < 1:2858679/93‑1 (MQ=255)
atatTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAgg < 2:5196667/93‑1 (MQ=255)
atatTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAgg < 1:7088397/93‑1 (MQ=255)
tatTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGa < 1:4255579/93‑1 (MQ=255)
tatTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGa > 2:6471789/1‑93 (MQ=255)
atTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGaa > 1:5583470/1‑93 (MQ=255)
ttGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGaaa > 1:6752799/1‑93 (MQ=255)
ttGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGaaa > 1:1680549/1‑93 (MQ=255)
gAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAAc > 2:1873737/1‑93 (MQ=255)
aGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACt < 2:5717616/93‑1 (MQ=255)
aGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACt < 1:5622250/93‑1 (MQ=255)
aTTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAc < 2:7858025/93‑1 (MQ=255)
ttATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAcc > 1:4331986/1‑93 (MQ=255)
ttATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAcc > 1:5735468/1‑93 (MQ=255)
aTGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCgg > 2:3607772/1‑93 (MQ=255)
tttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGc < 1:3384901/93‑1 (MQ=255)
ttACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCt < 2:5123272/93‑1 (MQ=255)
aCGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAc < 2:154832/93‑1 (MQ=255)
aCGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAc < 1:2650355/93‑1 (MQ=255)
aCGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAc < 2:3409124/93‑1 (MQ=255)
gCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTAcgc < 1:6865150/93‑1 (MQ=255)
aTCTGTTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGt < 2:1227968/93‑1 (MQ=255)
aTCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGt < 2:1170528/93‑1 (MQ=255)
aTCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGt < 1:2137008/93‑1 (MQ=255)
aTCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGt < 1:3096426/93‑1 (MQ=255)
tCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAACCTCCCCGGCAGCTACGCGTc < 2:1252972/93‑1 (MQ=255)
tCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTc > 1:4756288/1‑93 (MQ=255)
tCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTc > 1:5071370/1‑93 (MQ=255)
tCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTc > 1:5362260/1‑93 (MQ=255)
tCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTc > 1:5850340/1‑93 (MQ=255)
ggTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGc > 1:5030745/1‑93 (MQ=255)
tttCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTg > 1:3038461/1‑93 (MQ=255)
tttCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTg > 1:6257984/1‑93 (MQ=255)
|
GGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTG > NC_000913/2208107‑2208286
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTT > NC_000913/2208105‑2208289
|
CCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCC < SRR4302543.6830024/94‑1 (MQ=60)
CCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCC < SRR4302543.6830023/94‑1 (MQ=60)
CGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCC > SRR4302543.1156739/1‑94 (MQ=60)
GAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGA < SRR4302543.7818329/94‑1 (MQ=60)
AGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGAT < SRR4302543.775433/94‑1 (MQ=60)
AGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGAT < SRR4302543.2532684/94‑1 (MQ=60)
GAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATC > SRR4302543.2773762/1‑94 (MQ=60)
AAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCC < SRR4302543.7719078/94‑1 (MQ=60)
AAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCC > SRR4302543.3201167/1‑94 (MQ=60)
AAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCC > SRR4302543.3541540/1‑94 (MQ=60)
AAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCC < SRR4302543.6759908/94‑1 (MQ=60)
AGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCCTCTGGTTTTCCGATCCC > SRR4302543.5080720/1‑94 (MQ=60)
AGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATATGGTTTCCCGATCCC > SRR4302543.4118529/1‑94 (MQ=60)
AGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGGATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCC > SRR4302543.3002504/1‑94 (MQ=60)
CAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGA > SRR4302543.6293626/1‑94 (MQ=60)
CAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGA > SRR4302543.2801680/1‑94 (MQ=60)
CTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCG < SRR4302543.1631712/94‑1 (MQ=60)
CTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCG < SRR4302543.1601467/94‑1 (MQ=60)
TTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGG < SRR4302543.4567368/94‑1 (MQ=60)
TTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGG > SRR4302543.7829077/1‑94 (MQ=60)
TTGATCATCTGCGGCTGGGGTCTTTAGGTATGCGTTGCTGGCAGGGTATTGAGCATTATGGGTTATGCATCTGGTTTCCCGATCCCGACACCGG > SRR4302543.2765845/1‑94 (MQ=60)
CATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTA < SRR4302543.7827212/94‑1 (MQ=60)
CATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTA > SRR4302543.1337991/1‑94 (MQ=60)
CATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTA > SRR4302543.7605544/1‑94 (MQ=60)
TCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATT < SRR4302543.2482311/94‑1 (MQ=60)
CTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTT > SRR4302543.2757242/1‑94 (MQ=60)
TGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTT < SRR4302543.1559998/94‑1 (MQ=60)
CGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGC > SRR4302543.7479323/1‑94 (MQ=60)
GGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCA > SRR4302543.7958957/1‑94 (MQ=60)
GCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCAC < SRR4302543.1933092/94‑1 (MQ=60)
GGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTT > SRR4302543.1799700/1‑94 (MQ=60)
GGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTT > SRR4302543.5833753/1‑94 (MQ=60)
GGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTT > SRR4302543.2027937/1‑94 (MQ=60)
GTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGAAACCGGCAGTATTTTGCACCTTT < SRR4302543.1402849/94‑1 (MQ=60)
GTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCG > SRR4302543.7434356/1‑94 (MQ=60)
GTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCG < SRR4302543.747160/94‑1 (MQ=60)
GTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCG < SRR4302543.585775/94‑1 (MQ=60)
GTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCG < SRR4302543.1704145/94‑1 (MQ=60)
CTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCG > SRR4302543.1768228/1‑94 (MQ=60)
TTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGC > SRR4302543.3765289/1‑94 (MQ=60)
TTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCA > SRR4302543.2057691/1‑94 (MQ=60)
TAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAG > SRR4302543.292873/1‑94 (MQ=60)
TAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAG < SRR4302543.6839872/94‑1 (MQ=60)
GGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTT > SRR4302543.5013337/1‑94 (MQ=60)
GTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTG < SRR4302543.7970091/94‑1 (MQ=60)
ATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGC > SRR4302543.7779255/1‑94 (MQ=60)
TGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCC < SRR4302543.2721948/94‑1 (MQ=60)
TGCGTTGCTGGCAGGATATTGAGCATTATGGGTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCC < SRR4302543.2721947/94‑1 (MQ=60)
GCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCG < SRR4302543.1576996/94‑1 (MQ=60)
CGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGC > SRR4302543.5419208/1‑94 (MQ=60)
TGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAA < SRR4302543.2846479/94‑1 (MQ=60)
GCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAG > SRR4302543.7181795/1‑94 (MQ=60)
GCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAG < SRR4302543.1518194/94‑1 (MQ=60)
CTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGT > SRR4302543.5280659/1‑94 (MQ=60)
CTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGT > SRR4302543.259861/1‑94 (MQ=60)
TGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTG > SRR4302543.5482246/1‑94 (MQ=60)
TGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTG > SRR4302543.7126553/1‑94 (MQ=60)
GCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAA < SRR4302543.6030328/94‑1 (MQ=60)
GAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAAC < SRR4302543.1836150/94‑1 (MQ=60)
CAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAAC > SRR4302543.7319978/1‑94 (MQ=60)
CAGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAAC < SRR4302543.5680692/94‑1 (MQ=60)
AGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACA < SRR4302543.4582484/94‑1 (MQ=60)
AGGATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACA > SRR4302543.1161340/1‑94 (MQ=60)
GATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGG > SRR4302543.3182884/1‑94 (MQ=60)
GTATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGA < SRR4302543.6069485/94‑1 (MQ=60)
ATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCATTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGA < SRR4302543.2884754/94‑1 (MQ=60)
ATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGA < SRR4302543.7157231/94‑1 (MQ=60)
ATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGA > SRR4302543.5886917/1‑94 (MQ=60)
ATATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGA > SRR4302543.277236/1‑94 (MQ=60)
TATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAA < SRR4302543.4294212/94‑1 (MQ=60)
TATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAA > SRR4302543.5634318/1‑94 (MQ=60)
ATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAA > SRR4302543.715240/1‑94 (MQ=60)
ATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAA > SRR4302543.1695628/1‑94 (MQ=60)
ATTGAGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAA > SRR4302543.6816573/1‑94 (MQ=60)
AGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTC > SRR4302543.5703425/1‑94 (MQ=60)
AGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTC < SRR4302543.5673485/94‑1 (MQ=60)
AGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTC > SRR4302543.5644220/1‑94 (MQ=60)
AGCATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTC > SRR4302543.6549936/1‑94 (MQ=60)
CATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAC > SRR4302543.5790144/1‑94 (MQ=60)
CATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCAC > SRR4302543.3744844/1‑94 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACC > SRR4302543.861108/1‑94 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACC < SRR4302543.4192715/94‑1 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACC > SRR4302543.5787786/1‑94 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACC < SRR4302543.185726/94‑1 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACC > SRR4302543.2367282/1‑94 (MQ=60)
ATTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACC > SRR4302543.4371292/1‑94 (MQ=60)
TTATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCG < SRR4302543.178724/94‑1 (MQ=60)
TATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTagagtggagatcggaagagcggttcagcaggaatgccgag > SRR4302543.7508206/1‑54 (MQ=60)
TATGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGG > SRR4302543.4369409/1‑94 (MQ=60)
TGGTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCA < SRR4302543.2124294/94‑1 (MQ=60)
GTTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGC > SRR4302543.6986662/1‑94 (MQ=60)
TTTACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCT < SRR4302543.3415254/94‑1 (MQ=60)
ACGCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACG < SRR4302543.2674385/94‑1 (MQ=60)
GCATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCG < SRR4302543.6929830/94‑1 (MQ=60)
CATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGT > SRR4302543.7674740/1‑94 (MQ=60)
CATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGT > SRR4302543.7987216/1‑94 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC > SRR4302543.310132/1‑94 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC < SRR4302543.2156132/94‑1 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC < SRR4302543.3124278/94‑1 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC > SRR4302543.5903577/1‑94 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC > SRR4302543.5117399/1‑94 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC > SRR4302543.5903578/1‑94 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC > SRR4302543.5839565/1‑94 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC > SRR4302543.5410792/1‑94 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC > SRR4302543.5410791/1‑94 (MQ=60)
ATCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC > SRR4302543.4799753/1‑94 (MQ=60)
ATCTGGTTGCCCGCTCCCGACCCCGGCAGTATGTTGCCCCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTC < SRR4302543.3124277/94‑1 (MQ=60)
TCTGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCG < SRR4302543.3809779/94‑1 (MQ=60)
TGGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGC > SRR4302543.5076514/1‑94 (MQ=60)
TGGTTGCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGC > SRR4302543.7908510/1‑94 (MQ=60)
GGTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCT < SRR4302543.5139476/94‑1 (MQ=60)
GTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTG > SRR4302543.3065874/1‑94 (MQ=60)
GTTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTG > SRR4302543.6317010/1‑94 (MQ=60)
TTTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGT < SRR4302543.2909910/94‑1 (MQ=60)
TTCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTT < SRR4302543.4274058/94‑1 (MQ=60)
TCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTT < SRR4302543.6937147/94‑1 (MQ=60)
TCCCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTT > SRR4302543.1908266/1‑94 (MQ=60)
|
CCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTGGCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCACCTTTCGCGCAGTTGGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTT > NC_000913/2208105‑2208289
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
