Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,222,925 |
T→C |
intergenic (‑26/+139) |
pbpG ← / ← yohC |
penicillin‑binding protein 7/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,222,925 | 0 | T | C | 96.5%
| 413.8
/ 1.1
| 143 | intergenic (‑26/+139) | pbpG/yohC | penicillin‑binding protein 7/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (2/3); new base C (73/64); total (76/67) |
| Fisher's exact test for biased strand distribution p-value = 6.67e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 150 total aligned reads displayed.
AAAGGCACAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGTTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCGT > NC_000913/2222835‑2223008
|
aaaGGCACAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTg > 1:3337952/1‑93 (MQ=255)
aGGCACAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTgcg > 2:582512/1‑93 (MQ=255)
gccagcATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCAccgcc > 1:89094/1‑93 (MQ=255)
gccagcATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCAccgcc > 2:1410718/1‑93 (MQ=255)
cggcATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCgg > 2:4616157/3‑93 (MQ=255)
gcATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAg > 2:1235369/1‑93 (MQ=255)
aTCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTa > 2:3897413/1‑93 (MQ=255)
tCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTaa > 1:508281/1‑93 (MQ=255)
tCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTaa > 1:1376897/1‑93 (MQ=255)
tCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTaa > 2:2266098/1‑93 (MQ=255)
gggCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGTGCACCGCCGGAGTAAGGa > 1:3023280/1‑93 (MQ=255)
ggCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGAt < 1:4572350/93‑1 (MQ=255)
gtaGGCTAAATAAAGAAACTCGAAATTGCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGAttt < 1:102982/91‑1 (MQ=255)
cAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTa > 2:3175902/1‑93 (MQ=255)
cAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCAACGCCGGAGGAAGGATTTa > 2:756480/1‑93 (MQ=255)
cAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGATCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTa > 2:410279/1‑93 (MQ=255)
aGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTAc < 2:3470527/93‑1 (MQ=255)
aGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTAc < 1:1204769/93‑1 (MQ=255)
ggCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACt < 1:3982479/93‑1 (MQ=255)
ggCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACt > 1:3966466/1‑93 (MQ=255)
ggCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACt > 1:2759282/1‑93 (MQ=255)
ggCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACt > 1:2800550/1‑93 (MQ=255)
taaataaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAg > 2:4160016/1‑93 (MQ=255)
taaataaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGAGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAg > 1:663515/1‑93 (MQ=255)
aataaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGc < 2:4342457/93‑1 (MQ=255)
aataaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGc > 1:3408813/1‑93 (MQ=255)
aataaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGc < 2:425086/93‑1 (MQ=255)
aataaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGc < 2:1938564/93‑1 (MQ=255)
aataaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGGAAGGATTTACTGAGGc > 2:470589/1‑93 (MQ=255)
ataaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCt > 1:1781037/1‑93 (MQ=255)
ataaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCt < 1:4254485/93‑1 (MQ=255)
ataaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCt > 1:4357210/1‑93 (MQ=255)
taaaGACCCTCGAAATCTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCGCCGCCGGAGTAAGGATTTACTGAGGCTa < 2:3334828/93‑1 (MQ=255)
taaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTa < 2:1451353/93‑1 (MQ=255)
taaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTa < 2:847721/93‑1 (MQ=255)
aaaGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAg < 1:1433989/93‑1 (MQ=255)
aaaGAAACACGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAg < 1:1200869/93‑1 (MQ=255)
gAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGa > 2:3136842/1‑93 (MQ=255)
gAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGa > 2:1870776/1‑93 (MQ=255)
gAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGa < 2:1549864/93‑1 (MQ=255)
gAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGa > 1:3125716/1‑93 (MQ=255)
aaaCTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGAc < 1:1472257/93‑1 (MQ=255)
aaCTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACg > 2:291498/1‑93 (MQ=255)
aaCTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACg > 2:658728/1‑93 (MQ=255)
aaCTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACg > 1:3204314/1‑93 (MQ=255)
tCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCca > 2:1988061/1‑93 (MQ=255)
tCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCca < 2:3544915/93‑1 (MQ=255)
cGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCcat < 2:3039808/93‑1 (MQ=255)
gAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCcatc > 2:1820106/1‑93 (MQ=255)
gAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCcatc < 1:698642/93‑1 (MQ=255)
aaaTTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCcatca < 2:3273817/93‑1 (MQ=255)
aaaTTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCcatca < 2:2460326/93‑1 (MQ=255)
aaaTTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCcatca < 2:2520715/93‑1 (MQ=255)
aaTTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCcatcat > 2:1118959/1‑93 (MQ=255)
ttCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAAc < 2:4498499/93‑1 (MQ=255)
tCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATaaag < 2:3779034/93‑3 (MQ=255)
cGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGa < 2:1078727/93‑1 (MQ=255)
gCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGc > 2:2576521/1‑93 (MQ=255)
cATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAAAGAGCa > 2:10039/1‑93 (MQ=255)
gatgaGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCaaca > 1:1879591/1‑91 (MQ=255)
gatgaGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCaaaa < 2:2176093/93‑1 (MQ=255)
gatgaGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCaaaa > 2:318492/1‑93 (MQ=255)
gatgaGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCaaaa > 1:46625/1‑93 (MQ=255)
atgaGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCaaaaa > 1:261417/1‑93 (MQ=255)
atgaGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCaaaaa > 2:2891106/1‑93 (MQ=255)
tgaGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAg > 1:4298353/1‑93 (MQ=255)
gCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGc > 1:3447124/1‑93 (MQ=255)
gCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGc > 2:834729/1‑93 (MQ=255)
aTTCAGATAGTGGTGCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGa < 1:1124599/93‑1 (MQ=255)
ttCAGATAGTGGTTCACGCGCACGGGTTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGAt < 2:1563384/93‑1 (MQ=255)
ttCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGAt < 1:4155717/93‑1 (MQ=255)
ttCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGAt < 2:4004064/93‑1 (MQ=255)
ttCAGATAGTGGTTCACGCGCACGGGATGCGCACCGCCGGAGTAAGGATTTAATGAGGCTAGCGACGCCATCATAAAGCACAAACAGTGCGAt > 2:2843889/1‑93 (MQ=255)
tCAGATAGTGGTTCACGCGCACGGGTTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATc < 1:1674744/93‑1 (MQ=255)
aGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGt > 1:2056962/1‑93 (MQ=255)
gATAGTGGTTCACGGGGCCGCGCTGCGGACCAGCGGGGAGAGGACTTACTGAGGCTAGTGACGACAACATAACGAGCAAAAAGCGCGATCGTc > 2:1107846/1‑93 (MQ=255)
aTAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCa < 1:4544536/93‑1 (MQ=255)
aTAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCa > 1:362441/1‑93 (MQ=255)
tAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCaa > 1:1348725/1‑93 (MQ=255)
tAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCaa > 1:1727005/1‑93 (MQ=255)
tAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCaa > 2:2656169/1‑93 (MQ=255)
aGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCaaa > 1:879828/1‑93 (MQ=255)
aGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCaaa > 1:1523053/1‑93 (MQ=255)
gTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAg < 2:4301735/93‑1 (MQ=255)
ggTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGga < 2:4370995/93‑1 (MQ=255)
ggTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGga < 1:2203383/93‑1 (MQ=255)
gTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGgag > 2:1147326/1‑93 (MQ=255)
tCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGaa < 1:1646605/93‑1 (MQ=255)
tCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGaa < 1:2566404/93‑1 (MQ=255)
tCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGaa < 2:3502075/93‑1 (MQ=255)
cACGCGCACGGGTTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAAt < 2:2833784/93‑1 (MQ=255)
cACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAAt < 1:1986045/93‑1 (MQ=255)
aCGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATc < 2:3236374/93‑1 (MQ=255)
aCGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATc < 2:627532/93‑1 (MQ=255)
cgcgCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCg > 2:3897140/1‑93 (MQ=255)
cgcgCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCg < 2:4505072/93‑1 (MQ=255)
cgcgCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCg > 1:3614329/1‑93 (MQ=255)
gcgcACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCGt < 1:1564500/93‑1 (MQ=255)
gcgcACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCGt < 2:3343041/93‑1 (MQ=255)
gcgcACGGGCTGCGCACCGCAGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCGt < 2:3553856/93‑1 (MQ=255)
|
AAAGGCACAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGTTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCGT > NC_000913/2222835‑2223008
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAAGGCACAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGTTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCGTGAGGAAATG > NC_000913/2222834‑2223017
|
AAAAGGCACAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTG > SRR4302535.3361202/1‑94 (MQ=60)
AGCCAGCATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCC > SRR4302535.3483961/1‑94 (MQ=60)
AGCCAGCATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCC > SRR4302535.89724/1‑94 (MQ=60)
GCCAGCATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCG < SRR4302535.4031764/94‑1 (MQ=60)
ATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAA > SRR4302535.1386726/1‑94 (MQ=60)
ATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAA > SRR4302535.511837/1‑94 (MQ=60)
TCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAG < SRR4302535.393753/94‑1 (MQ=60)
AGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGTGCACCGCCGGAGTAAGGA > SRR4302535.3044447/1‑94 (MQ=60)
GGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATT < SRR4302535.4603521/94‑1 (MQ=60)
gtAGGCTAAATAAAGAAACTCGAAATTGCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTA < SRR4302535.103712/92‑1 (MQ=60)
CCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTA > SRR4302535.4624008/1‑94 (MQ=60)
CAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTAC < SRR4302535.4445029/94‑1 (MQ=60)
AGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACT < SRR4302535.1213420/94‑1 (MQ=60)
AGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACT > SRR4302535.2820472/1‑94 (MQ=60)
AGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACT > SRR4302535.2778944/1‑94 (MQ=60)
AGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACT > SRR4302535.3993559/1‑94 (MQ=60)
GGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTG < SRR4302535.1176367/94‑1 (MQ=60)
GGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTG < SRR4302535.4009689/94‑1 (MQ=60)
GCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGA < SRR4302535.924476/94‑1 (MQ=60)
CTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAG > SRR4302535.2710098/1‑94 (MQ=60)
CTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGAGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAG > SRR4302535.668151/1‑94 (MQ=60)
AAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGC > SRR4302535.3432538/1‑94 (MQ=60)
AATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCT > SRR4302535.1793925/1‑94 (MQ=60)
AATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCT > SRR4302535.4387039/1‑94 (MQ=60)
ATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTA < SRR4302535.4283632/94‑1 (MQ=60)
AAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGG > SRR4302535.4309513/1‑94 (MQ=60)
AAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGC < SRR4302535.1444227/94‑1 (MQ=60)
AAAGAAACACGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGC < SRR4302535.1209472/94‑1 (MQ=60)
AGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGA > SRR4302535.3147487/1‑94 (MQ=60)
AAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACG < SRR4302535.1482798/94‑1 (MQ=60)
AAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACG > SRR4302535.3226505/1‑94 (MQ=60)
ACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCC > SRR4302535.3405475/1‑94 (MQ=60)
GAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCA < SRR4302535.703543/94‑1 (MQ=60)
ATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAA < SRR4302535.1843360/94‑1 (MQ=60)
CGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAG > SRR4302535.283953/1‑94 (MQ=60)
GCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCA < SRR4302535.129193/94‑1 (MQ=60)
TGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAACA > SRR4302535.1893134/1‑94 (MQ=60)
TGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAA > SRR4302535.46977/1‑94 (MQ=60)
TGATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGGAAGGATTTACTGAGGCTAGCGACGCACTCATAACGAGCAAAA > SRR4302535.1504100/1‑94 (MQ=60)
GATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAA > SRR4302535.263229/1‑94 (MQ=60)
ATGAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAG > SRR4302535.4327767/1‑94 (MQ=60)
GAGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTG < SRR4302535.1396023/94‑1 (MQ=60)
AGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGC < SRR4302535.3154459/94‑1 (MQ=60)
AGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGC > SRR4302535.3471093/1‑94 (MQ=60)
AGCATTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGC < SRR4302535.1726625/94‑1 (MQ=60)
CATTCAGATAGTGGTTCACGCGCACGGGTTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGA > SRR4302535.2352525/1‑94 (MQ=60)
ATTCAGATAGTGGTGCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGAT < SRR4302535.1132623/94‑1 (MQ=60)
TTCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATC < SRR4302535.4184166/94‑1 (MQ=60)
TCAGATAGTGGTTCACGCGCACGGGTTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCG < SRR4302535.1686870/94‑1 (MQ=60)
TCAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCG < SRR4302535.3705463/94‑1 (MQ=60)
CAGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGT > SRR4302535.2071781/1‑94 (MQ=60)
AGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTC > SRR4302535.2064998/1‑94 (MQ=60)
AGATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTC < SRR4302535.1645184/94‑1 (MQ=60)
GATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCA > SRR4302535.364941/1‑94 (MQ=60)
ATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAA < SRR4302535.4575617/94‑1 (MQ=60)
ATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAA > SRR4302535.1358358/1‑94 (MQ=60)
ATAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAA > SRR4302535.1739490/1‑94 (MQ=60)
TAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAA > SRR4302535.1534024/1‑94 (MQ=60)
TAGTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAA > SRR4302535.886057/1‑94 (MQ=60)
GTGGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGG < SRR4302535.555670/94‑1 (MQ=60)
GGTTCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAG < SRR4302535.2219083/94‑1 (MQ=60)
TCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAAT < SRR4302535.1658505/94‑1 (MQ=60)
TCACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAAT < SRR4302535.2584867/94‑1 (MQ=60)
CACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATC < SRR4302535.2000348/94‑1 (MQ=60)
ACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCG > SRR4302535.3639385/1‑94 (MQ=60)
ACGCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCG < SRR4302535.838812/94‑1 (MQ=60)
GCGCACGGGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCGTG < SRR4302535.1575796/94‑1 (MQ=60)
GGCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCGTGAGGAAAT < SRR4302535.277251/94‑1 (MQ=60)
GCTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCGTGAGGAAATG < SRR4302535.1666086/94‑1 (MQ=60)
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AAAAGGCACAGCCAGCATCAGGGCCAGGCTAAATAAAGAAACTCGAAATTTCGGCATGATGAGCATTCAGATAGTGGTTCACGCGCACGGGTTGCGCACCGCCGGAGTAAGGATTTACTGAGGCTAGCGACGCCATCATAACGAGCAAAAAGTGCGATCGTCAAAGGAGAATCGTGAGGAAATG > NC_000913/2222834‑2223017
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
