Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,231,505 |
(T)6→7 |
coding (608/720 nt) |
sanA → |
vancomycin sensitivity |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,231,499 | 1 | . | T | 100.0%
| 299.4
/ NA
| 85 | R201L (CGT→CTT) | sanA | vancomycin sensitivity |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (47/38); total (47/38) |
Only 100 of 102 total aligned reads displayed.
GTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑TTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTT > NC_000913/2231407‑2231586
|
gTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACcgcg > 2:2656787/1‑93 (MQ=255)
aCCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑ttt > 1:3792296/1‑93 (MQ=255)
ccGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑tttt > 2:2847102/1‑93 (MQ=255)
ccGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑cttt > 1:1054152/1‑93 (MQ=255)
cGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑ttttt > 1:559702/1‑93 (MQ=255)
cGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑ttttt < 1:3059720/93‑1 (MQ=255)
gAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑tttttt < 1:1175134/93‑1 (MQ=255)
aaaGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑ttttttt > 1:3838624/1‑92 (MQ=255)
aaGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑ttttttta < 2:2414387/93‑3 (MQ=255)
aaGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTCAACCGCG‑atttttta > 1:4001222/1‑91 (MQ=255)
aGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑tttttttag > 1:1829511/1‑90 (MQ=255)
aGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑tttttttag < 2:2854323/93‑4 (MQ=255)
gATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑tttttttagg > 2:2945728/1‑89 (MQ=255)
gATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑tttttttagg < 2:2111982/93‑5 (MQ=255)
gATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑tttttttagg > 1:2044465/1‑89 (MQ=255)
tatGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGc < 1:1939410/93‑1 (MQ=255)
tatGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGc < 2:3323985/93‑1 (MQ=255)
tatGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGc > 1:1903523/1‑93 (MQ=255)
tatGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGc > 2:1928940/1‑93 (MQ=255)
atGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGcc > 2:4247658/1‑93 (MQ=255)
gCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGc > 1:2721820/1‑93 (MQ=255)
cTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCt > 1:737785/1‑93 (MQ=255)
tGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTg > 2:2629771/1‑93 (MQ=255)
tGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTg > 1:2662548/1‑93 (MQ=255)
tGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTg > 1:1768226/1‑93 (MQ=255)
aGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTcc > 2:2872474/1‑93 (MQ=255)
gTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTccc > 1:3009162/1‑93 (MQ=255)
aCGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTcccca > 1:1850871/1‑91 (MQ=255)
aCGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTa < 1:1357955/93‑1 (MQ=255)
aCGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTa < 2:474717/93‑1 (MQ=255)
aCGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTa < 1:3638461/93‑1 (MQ=255)
cGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTAt > 2:2159992/1‑93 (MQ=255)
cGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTAt < 2:1073093/93‑1 (MQ=255)
cGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTAt < 2:1073092/93‑1 (MQ=255)
cGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTAt > 1:2162384/1‑93 (MQ=255)
tATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTc < 1:3802224/93‑1 (MQ=255)
tATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTc > 2:4512323/1‑93 (MQ=255)
tATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTc > 2:3051559/1‑93 (MQ=255)
tATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTc < 1:4588634/93‑1 (MQ=255)
aTTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTcc > 2:4602502/1‑93 (MQ=255)
aTTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTcc < 1:2298403/93‑1 (MQ=255)
ttCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCg > 1:2538199/1‑93 (MQ=255)
tGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTa < 1:3463319/93‑1 (MQ=255)
tGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTa > 2:3133072/1‑93 (MQ=255)
tGAAGTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTa < 1:1985794/93‑1 (MQ=255)
aaTTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATg > 1:816220/1‑93 (MQ=255)
aTTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGc > 2:302278/1‑93 (MQ=255)
tGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCAcc < 1:769829/93‑1 (MQ=255)
tGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCAcc < 2:2485028/93‑1 (MQ=255)
gccgccCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCa < 2:1104374/93‑1 (MQ=255)
ccgccCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAg < 2:2305938/93‑1 (MQ=255)
gccCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCACGt > 1:931823/1‑93 (MQ=255)
cccGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTa > 1:2868651/1‑93 (MQ=255)
cccGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTa > 1:3523406/1‑93 (MQ=255)
ccGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTAc > 2:2294862/1‑93 (MQ=255)
gTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCg > 1:3173470/1‑93 (MQ=255)
tttCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCgg > 1:1359555/1‑93 (MQ=255)
cGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAg > 1:1931759/1‑93 (MQ=255)
ggTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGaata < 2:2959006/93‑3 (MQ=255)
ggTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGa < 2:1922364/93‑1 (MQ=255)
ggTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGa > 2:4054920/1‑93 (MQ=255)
ggTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGa < 2:2694129/93‑1 (MQ=255)
ggTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGa < 2:2694128/93‑1 (MQ=255)
gTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGAt < 2:3197216/93‑1 (MQ=255)
tGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATg < 2:1758261/93‑1 (MQ=255)
tGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATg < 1:1966139/93‑1 (MQ=255)
tggctgACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAg < 2:3602990/93‑1 (MQ=255)
gctgACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAggg < 2:677561/93‑1 (MQ=255)
gctgACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAggg < 1:2609616/93‑1 (MQ=255)
gctgACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAggg > 2:1957018/1‑93 (MQ=255)
tgACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGt > 1:330157/1‑93 (MQ=255)
tgACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGt > 2:534690/1‑93 (MQ=255)
gACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTa < 1:312381/93‑1 (MQ=255)
gACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTa > 1:3399416/1‑93 (MQ=255)
aCCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTAt > 1:2479616/1‑93 (MQ=255)
ccTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATc > 2:4598149/1‑93 (MQ=255)
ccTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATc < 1:3601795/93‑1 (MQ=255)
cTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATcc < 2:3836597/93‑1 (MQ=255)
cTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATcc > 2:1881102/1‑93 (MQ=255)
tttATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATccc > 1:3772463/1‑93 (MQ=255)
tttATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATccc > 2:216089/1‑93 (MQ=255)
tttATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATccc > 2:1235274/1‑93 (MQ=255)
ttATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCccg > 2:4500045/1‑93 (MQ=255)
tataTTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCACAGGGGTATCccgc > 2:540276/1‑93 (MQ=255)
tatTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCccgccg < 2:2066175/93‑1 (MQ=255)
tatTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCccgccg > 2:4100809/1‑93 (MQ=255)
atTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGt > 2:141848/1‑93 (MQ=255)
tttttAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTc > 2:1493034/1‑93 (MQ=255)
aCGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCg < 2:2488132/93‑1 (MQ=255)
gTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGaa < 2:1488094/93‑1 (MQ=255)
tGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGTTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAAc < 1:2507691/93‑1 (MQ=255)
tGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAAc < 1:3216576/93‑1 (MQ=255)
gAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACa < 1:770380/93‑1 (MQ=255)
aaCCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAg > 1:742949/1‑93 (MQ=255)
aaCCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAg < 2:1913232/93‑1 (MQ=255)
aCCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGt < 1:3059952/93‑1 (MQ=255)
aCCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGt > 1:1290613/1‑93 (MQ=255)
ccGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCTGCCGTCACACCCGAACAGtt > 2:3450533/1‑93 (MQ=255)
ccGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGtt < 1:2698/93‑1 (MQ=255)
ccGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGCTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGtt < 1:4272328/93‑1 (MQ=255)
|
GTCACCGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑TTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTT > NC_000913/2231407‑2231586
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑TTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACA > NC_000913/2231412‑2231598
|
CGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑TTTTTT < SRR4302535.3081121/94‑1 (MQ=60)
GAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑TTTTTTT < SRR4302535.1183522/94‑1 (MQ=60)
GAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑TTTTTTT > SRR4302535.3865084/1‑94 (MQ=60)
AAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTCAACCGCGATTTTTTA > SRR4302535.4028593/1‑94 (MQ=60)
AAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑TTTTTTtag > SRR4302535.1842720/1‑91 (MQ=60)
AGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGG > SRR4302535.2059192/1‑94 (MQ=60)
ATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGC > SRR4302535.1917222/1‑94 (MQ=60)
TATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCC < SRR4302535.1953378/94‑1 (MQ=60)
TGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGC > SRR4302535.2741263/1‑94 (MQ=60)
GCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCT > SRR4302535.742972/1‑94 (MQ=60)
CTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTG > SRR4302535.1781045/1‑94 (MQ=60)
CTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTG > SRR4302535.2681615/1‑94 (MQ=60)
AGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCC > SRR4302535.3030239/1‑94 (MQ=60)
TACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCCA > SRR4302535.1864209/1‑94 (MQ=60)
ACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTAT < SRR4302535.1367666/94‑1 (MQ=60)
ACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTAT > SRR4302535.2177901/1‑94 (MQ=60)
ACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTAT < SRR4302535.3663671/94‑1 (MQ=60)
TATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCC < SRR4302535.3828432/94‑1 (MQ=60)
TATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCC < SRR4302535.4619875/94‑1 (MQ=60)
ATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCG < SRR4302535.2314848/94‑1 (MQ=60)
ATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCG > SRR4302535.2556482/1‑94 (MQ=60)
TGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTAT < SRR4302535.3487391/94‑1 (MQ=60)
TGAAGTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTAT < SRR4302535.2000095/94‑1 (MQ=60)
GAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATG > SRR4302535.821943/1‑94 (MQ=60)
TGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCA < SRR4302535.775246/94‑1 (MQ=60)
CGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCACGT > SRR4302535.938413/1‑94 (MQ=60)
GCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTA > SRR4302535.3547875/1‑94 (MQ=60)
GCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTA > SRR4302535.2888969/1‑94 (MQ=60)
CGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCG > SRR4302535.3195436/1‑94 (MQ=60)
GTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGG > SRR4302535.1369276/1‑94 (MQ=60)
TCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAG > SRR4302535.1945679/1‑94 (MQ=60)
TGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGC < SRR4302535.1980312/94‑1 (MQ=60)
GCTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGG < SRR4302535.2628342/94‑1 (MQ=60)
CTGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGT > SRR4302535.332444/1‑94 (MQ=60)
TGACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTA > SRR4302535.3423070/1‑94 (MQ=60)
GACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTAT < SRR4302535.314545/94‑1 (MQ=60)
GACCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTAT > SRR4302535.2497498/1‑94 (MQ=60)
CCTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCC < SRR4302535.3626790/94‑1 (MQ=60)
CTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCC > SRR4302535.3798484/1‑94 (MQ=60)
CTTTATATTTTTAAACGTGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCC < SRR4302535.1006994/94‑1 (MQ=60)
TGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGTTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACA < SRR4302535.2525769/94‑1 (MQ=60)
TGAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACA < SRR4302535.3238857/94‑1 (MQ=60)
GAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAG < SRR4302535.775802/94‑1 (MQ=60)
GAACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAG > SRR4302535.748165/1‑94 (MQ=60)
AACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGT > SRR4302535.1299813/1‑94 (MQ=60)
ACCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTT < SRR4302535.3081353/94‑1 (MQ=60)
CCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTA < SRR4302535.2723/94‑1 (MQ=60)
CCGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGCTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTA < SRR4302535.4301574/94‑1 (MQ=60)
CGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTAC < SRR4302535.3605462/94‑1 (MQ=60)
CGCGTTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTAC < SRR4302535.2180250/94‑1 (MQ=60)
gtTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTG < SRR4302535.1012695/92‑1 (MQ=60)
gtTTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTG > SRR4302535.1486717/3‑94 (MQ=60)
TTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAAT > SRR4302535.2811649/1‑94 (MQ=60)
TTTAGGGCCGCTGGGCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTA > SRR4302535.4066162/1‑94 (MQ=60)
TAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACA < SRR4302535.2744866/94‑1 (MQ=60)
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CGAAAGATATGCTGTCAGTACGTATTCGTGAATTTGCCGCCCGTTTCGGTGCGCTGGCTGACCTTTATATTTTTAAACGTGAACCGCG‑TTTTTTAGGGCCGCTGGTCCCTATTCCGGCTATGCACCAGGTACCGGAAGATGCGCAGGGGTATCCCGCCGTCACACCCGAACAGTTACTTGAATTACA > NC_000913/2231412‑2231598
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
