Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,242,496	T→C	G189G (GGT→GGC)	yeiG →	putative esterase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,242,496	0	T	C	98.4%	769.8 / ‑1.6	250	G189G (GGT→GGC)	yeiG	putative esterase
Reads supporting (aligned to +/- strand): ref base T (2/2); new base C (129/117); total (131/119)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 255 total aligned reads displayed.

GGGTAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGTGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCA  >  NC_000913/2242406‑2242585

gggTAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGa                                                                                         <  2:4968592/93‑1 (MQ=255)

gggTAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGa                                                                                         <  2:503325/93‑1 (MQ=255)

    aaaTACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGAc                                                                                     >  1:6666508/1‑93 (MQ=255)

         cacCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACaaaaa                                                                                <  2:3580830/93‑1 (MQ=255)

         cacCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACaaaaa                                                                                <  2:1496408/93‑1 (MQ=255)

         cacCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACaaaaa                                                                                <  2:4588938/93‑1 (MQ=255)

         cacCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACaaaaa                                                                                <  1:690587/93‑1 (MQ=255)

         cacCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACaaaaa                                                                                >  2:2757543/1‑93 (MQ=255)

           ccAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATg                                                                              >  1:4963409/1‑93 (MQ=255)

            cAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGc                                                                             >  1:4216608/1‑93 (MQ=255)

             aGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCa                                                                            <  1:4031502/93‑1 (MQ=255)

              gCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCAt                                                                           >  2:4043138/1‑93 (MQ=255)

               cGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATg                                                                          <  1:5024735/93‑1 (MQ=255)

                gTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATgg                                                                         >  1:2912353/1‑93 (MQ=255)

                gTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATgg                                                                         <  1:1429212/93‑1 (MQ=255)

                gTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATgg                                                                         >  2:6416137/1‑93 (MQ=255)

                 tttCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGc                                                                        >  2:6981099/1‑93 (MQ=255)

                   tCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTg                                                                      <  2:13759/93‑1 (MQ=255)

                      gCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACACAAATGCATGGCTGGaa                                                                   >  1:3365707/1‑93 (MQ=255)

                      gCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGaa                                                                   <  1:2234933/93‑1 (MQ=255)

                       ccTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAAt                                                                  <  1:6576836/93‑1 (MQ=255)

                        cTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATg                                                                 <  1:1078201/93‑1 (MQ=255)

                         tttGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATgg                                                                >  1:5652853/1‑93 (MQ=255)

                          ttGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATggg                                                               <  2:4783058/93‑1 (MQ=255)

                             cgcCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACa                                                            >  2:4626620/1‑93 (MQ=255)

                              gcCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAg                                                           <  2:4527463/93‑1 (MQ=255)

                               ccAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACCAAAATGCATGGCTGGAATGGGACCGt                                                          >  1:3538563/1‑93 (MQ=255)

                                cAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGtt                                                         <  2:2473983/93‑1 (MQ=255)

                                cAATTGTGAATCCATGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGtt                                                         >  1:2417923/1‑93 (MQ=255)

                                 aaTTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTg                                                        >  1:6962555/1‑93 (MQ=255)

                                 aaTTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTg                                                        >  1:2274878/1‑93 (MQ=255)

                                 aaTTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTg                                                        >  1:4532954/1‑93 (MQ=255)

                                     gtgAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGTTGGAATGGGACAGTTGCGCa                                                    >  1:18737/1‑93 (MQ=255)

                                      tgAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCAc                                                   >  1:5917024/1‑93 (MQ=255)

                                      tgAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCAc                                                   <  1:7631187/93‑1 (MQ=255)

                                      tgAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCAc                                                   <  2:4398960/93‑1 (MQ=255)

                                      tgAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCAc                                                   <  2:335183/93‑1 (MQ=255)

                                      tgAATCCGTGCAGCGTCCCGTGGCGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCAc                                                   <  2:4302617/93‑1 (MQ=255)

                                       gAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACt                                                  <  2:6677589/93‑1 (MQ=255)

                                       gAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACt                                                  <  2:3397403/93‑1 (MQ=255)

                                        aaTCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTg                                                 <  2:6105232/93‑1 (MQ=255)

                                         aTCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGa                                                <  2:3220206/93‑1 (MQ=255)

                                           ccGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATg                                              <  2:7292283/93‑1 (MQ=255)

                                             gTGCGGCGTCCGGTGGGAAATAAAAGCTTTTAGCAGTTATTTAGGCGAGGAAAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTa                                            <  1:3431017/93‑1 (MQ=255)

                                             gTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTa                                            <  2:3074497/93‑1 (MQ=255)

                                             gTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTa                                            >  1:1593043/1‑93 (MQ=255)

                                             gTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTa                                            <  2:3289483/93‑1 (MQ=255)

                                             gTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTa                                            >  2:7707950/1‑93 (MQ=255)

                                              tGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTAt                                           >  1:491519/1‑93 (MQ=255)

                                              tGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTAt                                           <  2:7245611/93‑1 (MQ=255)

                                              tGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTAt                                           >  2:5609329/1‑93 (MQ=255)

                                               gCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATg                                          <  1:6146318/93‑1 (MQ=255)

                                                cAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGc                                         <  1:722213/93‑1 (MQ=255)

                                                 aGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGcc                                        >  1:3322542/1‑93 (MQ=255)

                                                  gCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCa                                       <  2:1041411/93‑1 (MQ=255)

                                                  gCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCa                                       >  2:4929136/1‑93 (MQ=255)

                                                   cGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGTGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAg                                      >  1:120472/1‑93 (MQ=255)

                                                   cGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAg                                      <  2:5921543/93‑1 (MQ=255)

                                                    gTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAga                                     >  1:5777152/1‑92 (MQ=255)

                                                     tCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTa                                    >  1:6428238/1‑93 (MQ=255)

                                                     tCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTa                                    >  1:5612292/1‑93 (MQ=255)

                                                      cccGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTaa                                   <  2:2289427/93‑1 (MQ=255)

                                                      cccGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTaa                                   <  1:4644385/93‑1 (MQ=255)

                                                         gTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAAcgc                                <  2:6843092/93‑1 (MQ=255)

                                                          tGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAAcgcg                               >  1:769807/1‑93 (MQ=255)

                                                          tGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAAcgcg                               <  1:7261248/93‑1 (MQ=255)

                                                          tGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAAcgcg                               >  1:2035588/1‑93 (MQ=255)

                                                           ggggAATCAAAGCGTTTAGCAGCTATTTAGGTGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACgcgc                              <  1:3931729/93‑1 (MQ=255)

                                                            gggAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCa                             <  2:2739598/93‑1 (MQ=255)

                                                            gggAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCa                             <  1:2054764/93‑1 (MQ=255)

                                                            gggAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAAAGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCa                             <  1:1534249/93‑1 (MQ=255)

                                                              gAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAgg                           >  2:7877922/1‑93 (MQ=255)

                                                              gAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAgg                           >  1:2619196/1‑93 (MQ=255)

                                                               aaTCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGa                          >  2:1933384/1‑93 (MQ=255)

                                                               aaTCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGa                          >  2:4848490/1‑93 (MQ=255)

                                                               aaTCAAAGCGTTTAGCAACTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGa                          <  1:7029256/93‑1 (MQ=255)

                                                                aTCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGAt                         <  2:1795548/93‑1 (MQ=255)

                                                                 tCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATg                        >  2:3139749/1‑93 (MQ=255)

                                                                 tCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATg                        >  1:6645385/1‑93 (MQ=255)

                                                                 tCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATg                        >  1:7895238/1‑93 (MQ=255)

                                                                 acAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATg                        <  2:6264025/92‑1 (MQ=255)

                                                                  cAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGc                       >  1:7748405/1‑93 (MQ=255)

                                                                  cAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGc                       <  2:5210789/93‑1 (MQ=255)

                                                                      gCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATc                   >  2:7554128/1‑93 (MQ=255)

                                                                       cGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATcc                  <  1:7515508/93‑1 (MQ=255)

                                                                        gTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATccc                 >  1:991777/1‑93 (MQ=255)

                                                                        gTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATccc                 >  1:3687064/1‑93 (MQ=255)

                                                                        gTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATccc                 <  1:4443466/93‑1 (MQ=255)

                                                                           tAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGAc              <  2:5273535/93‑1 (MQ=255)

                                                                             gcagcTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGc            >  2:6189848/1‑93 (MQ=255)

                                                                               agcTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCtt          >  2:3636786/1‑93 (MQ=255)

                                                                                gcTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTa         <  1:5278660/93‑1 (MQ=255)

                                                                                  tATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATc       >  1:5523609/1‑93 (MQ=255)

                                                                                  tATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATc       <  1:3849085/93‑1 (MQ=255)

                                                                                  tATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATc       >  1:3584093/1‑93 (MQ=255)

                                                                                   aTTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGCTGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCg      >  2:1331405/1‑93 (MQ=255)

                                                                                   aTTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATACCAGTAACGCGCAGGATGCGATCCCGACGCTTATCg      <  2:3004460/93‑1 (MQ=255)

                                                                                    tttAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGa     >  2:2106009/1‑93 (MQ=255)

                                                                                    tttAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGa     <  1:869796/93‑1 (MQ=255)

                                                                                       aGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCa  <  1:7106389/93‑1 (MQ=255)

GGGTAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGTGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCA  >  NC_000913/2242406‑2242585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGGTAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGTGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCAGGGC  >  NC_000913/2242406‑2242589

GGGTAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAG                                                                                            >  SRR4302543.3424862/1‑94 (MQ=60)

 GGTAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGG                                                                                           >  SRR4302543.5911133/1‑94 (MQ=60)

 GGTAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGG                                                                                           >  SRR4302543.3639459/1‑94 (MQ=60)

   TAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGAC                                                                                         <  SRR4302543.2600490/94‑1 (MQ=60)

   TAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGAC                                                                                         >  SRR4302543.6729443/1‑94 (MQ=60)

   TAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGAC                                                                                         <  SRR4302543.4494718/94‑1 (MQ=60)

   TAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGAC                                                                                         <  SRR4302543.7760731/94‑1 (MQ=60)

    AAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACA                                                                                        >  SRR4302543.3458469/1‑94 (MQ=60)

    AAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACA                                                                                        >  SRR4302543.7666282/1‑94 (MQ=60)

     AATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAA                                                                                       >  SRR4302543.5588290/1‑94 (MQ=60)

      ATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAA                                                                                      >  SRR4302543.6994047/1‑94 (MQ=60)

         CACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAAT                                                                                   <  SRR4302543.696927/94‑1 (MQ=60)

          ACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATG                                                                                  >  SRR4302543.5008590/1‑94 (MQ=60)

           CCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGC                                                                                 >  SRR4302543.4254837/1‑94 (MQ=60)

            CAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCA                                                                                <  SRR4302543.7320384/94‑1 (MQ=60)

             AGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCAT                                                                               <  SRR4302543.4067546/94‑1 (MQ=60)

               CGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGG                                                                             <  SRR4302543.5070461/94‑1 (MQ=60)

               CGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGG                                                                             >  SRR4302543.5391532/1‑94 (MQ=60)

               CGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGG                                                                             <  SRR4302543.6225812/94‑1 (MQ=60)

               CGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGG                                                                             <  SRR4302543.275877/94‑1 (MQ=60)

               CGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGG                                                                             >  SRR4302543.2938820/1‑94 (MQ=60)

                GTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGC                                                                            <  SRR4302543.4188996/94‑1 (MQ=60)

                GTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGC                                                                            <  SRR4302543.1442140/94‑1 (MQ=60)

                GTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGC                                                                            <  SRR4302543.1435582/94‑1 (MQ=60)

                GTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGC                                                                            >  SRR4302543.468680/1‑94 (MQ=60)

                GTTTCGGCCTTTGCGCCAATTGTGAATCAGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGC                                                                            <  SRR4302543.5012115/94‑1 (MQ=60)

                    CGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGA                                                                        >  SRR4302543.5002279/1‑94 (MQ=60)

                     GGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACACAAATGCATGGCTGGAA                                                                       >  SRR4302543.3395957/1‑94 (MQ=60)

                      GCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAAT                                                                      <  SRR4302543.2255150/94‑1 (MQ=60)

                      GCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAAT                                                                      >  SRR4302543.1594973/1‑94 (MQ=60)

                       CCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATG                                                                     <  SRR4302543.6638769/94‑1 (MQ=60)

                       CCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATG                                                                     <  SRR4302543.6638770/94‑1 (MQ=60)

                        CTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGG                                                                    >  SRR4302543.5704393/1‑94 (MQ=60)

                        CTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGG                                                                    >  SRR4302543.5994042/1‑94 (MQ=60)

                        CTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGG                                                                    <  SRR4302543.1087895/94‑1 (MQ=60)

                           TGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGAC                                                                 <  SRR4302543.706196/94‑1 (MQ=60)

                             CGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAG                                                               >  SRR4302543.5486271/1‑94 (MQ=60)

                             CGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAG                                                               >  SRR4302543.5676461/1‑94 (MQ=60)

                             CGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAG                                                               >  SRR4302543.945422/1‑94 (MQ=60)

                             CGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAG                                                               <  SRR4302543.2013026/94‑1 (MQ=60)

                              GCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACCAAAATGCATGGCTGGAATGGGACCGT                                                              >  SRR4302543.3570025/1‑94 (MQ=60)

                               CCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTT                                                             <  SRR4302543.5146460/94‑1 (MQ=60)

                               CCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTT                                                             <  SRR4302543.7251980/94‑1 (MQ=60)

                               CCAATTGTGAATCCATGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTT                                                             >  SRR4302543.2439762/1‑94 (MQ=60)

                                CAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTG                                                            >  SRR4302543.7028069/1‑94 (MQ=60)

                                CAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTG                                                            >  SRR4302543.4574217/1‑94 (MQ=60)

                                CAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTG                                                            >  SRR4302543.2295681/1‑94 (MQ=60)

                                CAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTC                                                            >  SRR4302543.4574215/1‑94 (MQ=60)

                                  ATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCG                                                          <  SRR4302543.7846820/94‑1 (MQ=60)

                                  ATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCG                                                          <  SRR4302543.692496/94‑1 (MQ=60)

                                    TGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGTTGGAATGGGACAGTTGCGCA                                                        >  SRR4302543.18909/1‑94 (MQ=60)

                                     GTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCAC                                                       >  SRR4302543.5971068/1‑94 (MQ=60)

                                      TGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACT                                                      <  SRR4302543.7703601/94‑1 (MQ=60)

                                      TGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACT                                                      <  SRR4302543.5818596/94‑1 (MQ=60)

                                      TGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACT                                                      <  SRR4302543.1564389/94‑1 (MQ=60)

                                      TGAATCCGTGCAGCGTCCCGTGGAGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACT                                                      <  SRR4302543.3926057/94‑1 (MQ=60)

                                        AATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGTGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGA                                                    >  SRR4302543.2404/1‑94 (MQ=60)

                                         ATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGAT                                                   <  SRR4302543.2060558/94‑1 (MQ=60)

                                           CCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGT                                                 >  SRR4302543.1102265/1‑94 (MQ=60)

                                            CGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTA                                                >  SRR4302543.6907674/1‑94 (MQ=60)

                                            CGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTA                                                >  SRR4302543.1607259/1‑94 (MQ=60)

                                            CGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTA                                                >  SRR4302543.7103251/1‑94 (MQ=60)

                                            CGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTA                                                <  SRR4302543.7819903/94‑1 (MQ=60)

                                             GTGCGGCGTCCGGTGGGAAATAAAAGCTTTTAGCAGTTATTTAGGCGAGGAAAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTAT                                               <  SRR4302543.3461717/94‑1 (MQ=60)

                                             GTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTAT                                               >  SRR4302543.496057/1‑94 (MQ=60)

                                              GGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATG                                              <  SRR4302543.7721261/94‑1 (MQ=60)

                                               GCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGC                                             <  SRR4302543.6204523/94‑1 (MQ=60)

                                                CAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCC                                            >  SRR4302543.3352514/1‑94 (MQ=60)

                                                CAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCC                                            <  SRR4302543.728728/94‑1 (MQ=60)

                                                 AGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCA                                           >  SRR4302543.1994896/1‑94 (MQ=60)

                                                 AGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCA                                           >  SRR4302543.6111430/1‑94 (MQ=60)

                                                 AGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCA                                           >  SRR4302543.5050241/1‑94 (MQ=60)

                                                  GCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGTGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAG                                          >  SRR4302543.121560/1‑94 (MQ=60)

                                                   CGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGT                                         >  SRR4302543.3562153/1‑94 (MQ=60)

                                                   CGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGA                                         >  SRR4302543.5829738/1‑94 (MQ=60)

                                                    GTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTA                                        <  SRR4302543.836642/94‑1 (MQ=60)

                                                    GTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTA                                        >  SRR4302543.6488806/1‑94 (MQ=60)

                                                    GTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTA                                        >  SRR4302543.5663431/1‑94 (MQ=60)

                                                     TCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAA                                       <  SRR4302543.3580363/94‑1 (MQ=60)

                                                      CCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAAC                                      <  SRR4302543.4686647/94‑1 (MQ=60)

                                                        CGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGC                                    >  SRR4302543.4085444/1‑94 (MQ=60)

                                                         GTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCG                                   >  SRR4302543.2053865/1‑94 (MQ=60)

                                                         GTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCG                                   >  SRR4302543.776563/1‑94 (MQ=60)

                                                          TGGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGC                                  <  SRR4302543.7331417/94‑1 (MQ=60)

                                                           GGGGAATCAAAGCGTTTAGCAGCTATTTAGGTGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCA                                 <  SRR4302543.3966451/94‑1 (MQ=60)

                                                           GGGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCA                                 >  SRR4302543.859219/1‑94 (MQ=60)

                                                            GGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAG                                <  SRR4302543.2073158/94‑1 (MQ=60)

                                                            GGGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAAAGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAG                                <  SRR4302543.1547993/94‑1 (MQ=60)

                                                             GGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGG                               >  SRR4302543.2642933/1‑94 (MQ=60)

                                                             GGAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGG                               >  SRR4302543.2428097/1‑94 (MQ=60)

                                                              GAATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGA                              <  SRR4302543.6727044/94‑1 (MQ=60)

                                                               AATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGAT                             <  SRR4302543.3577648/94‑1 (MQ=60)

                                                               AATCAAAGCGTTTAGCAACTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGAT                             <  SRR4302543.7096783/94‑1 (MQ=60)

                                                                ATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATG                            <  SRR4302543.1343943/94‑1 (MQ=60)

                                                                ATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATG                            >  SRR4302543.6708105/1‑94 (MQ=60)

                                                                ATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATG                            >  SRR4302543.7969478/1‑94 (MQ=60)

                                                                ATCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATG                            >  SRR4302543.3216953/1‑94 (MQ=60)

                                                                 TCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGC                           >  SRR4302543.7821580/1‑94 (MQ=60)

                                                                 TCAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGC                           >  SRR4302543.7897129/1‑94 (MQ=60)

                                                                  CAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCG                          >  SRR4302543.5607772/1‑94 (MQ=60)

                                                                  CAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCG                          <  SRR4302543.3801794/94‑1 (MQ=60)

                                                                  CAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCG                          <  SRR4302543.4838207/94‑1 (MQ=60)

                                                                  CAAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCG                          >  SRR4302543.7268016/1‑94 (MQ=60)

                                                                   AAAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGA                         >  SRR4302543.1810197/1‑94 (MQ=60)

                                                                    AAGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTACCGCGCAGGATGCGAT                        <  SRR4302543.5805844/94‑1 (MQ=60)

                                                                     AGCGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATC                       >  SRR4302543.6514917/1‑94 (MQ=60)

                                                                       CGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCC                     >  SRR4302543.1000532/1‑94 (MQ=60)

                                                                       CGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCC                     <  SRR4302543.7587274/94‑1 (MQ=60)

                                                                       CGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCC                     >  SRR4302543.3719460/1‑94 (MQ=60)

                                                                       CGTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCC                     <  SRR4302543.3155803/94‑1 (MQ=60)

                                                                       CGCTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCC                     >  SRR4302543.7333660/1‑94 (MQ=60)

                                                                        GTTTAGCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCG                    <  SRR4302543.4483703/94‑1 (MQ=60)

                                                                             GCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCT               <  SRR4302543.3381246/94‑1 (MQ=60)

                                                                             GCAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCT               >  SRR4302543.4713670/1‑94 (MQ=60)

                                                                              CAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTT              >  SRR4302543.7415764/1‑94 (MQ=60)

                                                                              CAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTT              >  SRR4302543.4041280/1‑94 (MQ=60)

                                                                              CAGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTT              >  SRR4302543.2288680/1‑94 (MQ=60)

                                                                               AGCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTA             >  SRR4302543.2225844/1‑94 (MQ=60)

                                                                                GCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTAT            <  SRR4302543.5326291/94‑1 (MQ=60)

                                                                                GCTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTAT            >  SRR4302543.2615184/1‑94 (MQ=60)

                                                                                ACTATTTAGGCGAGGACAAAAATGCGTGGCTGGAATGGGACAGTTGCGCACTGATGTATGCGAGTAACGCGCAGGATGCGATCCCGACGCTTAT            <  SRR4302543.1521601/94‑1 (MQ=60)

                                                                                 CTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATC           >  SRR4302543.5573782/1‑94 (MQ=60)

                                                                                 CTATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATC           >  SRR4302543.3615747/1‑94 (MQ=60)

                                                                                  TATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCG          <  SRR4302543.3883083/94‑1 (MQ=60)

                                                                                  TATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCG          >  SRR4302543.7032759/1‑94 (MQ=60)

                                                                                  TATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCG          >  SRR4302543.3922346/1‑94 (MQ=60)

                                                                                  TATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCG          >  SRR4302543.6504527/1‑94 (MQ=60)

                                                                                  TATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCG          <  SRR4302543.4340944/94‑1 (MQ=60)

                                                                                  TATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTCATCG          >  SRR4302543.3847271/1‑94 (MQ=60)

                                                                                   ATTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGA         >  SRR4302543.2226377/1‑94 (MQ=60)

                                                                                    TTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGAT        <  SRR4302543.6727414/94‑1 (MQ=60)

                                                                                    TTTAGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGAT        <  SRR4302543.877557/94‑1 (MQ=60)

                                                                                       AGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCAG     >  SRR4302543.1915723/1‑94 (MQ=60)

                                                                                       AGGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCAG     <  SRR4302543.7175418/94‑1 (MQ=60)

                                                                                        GGCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGAGCCCGACGCTTATCGATCAGG    >  SRR4302543.6066086/1‑94 (MQ=60)

                                                                                         GCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCAGGG   <  SRR4302543.805998/94‑1 (MQ=60)

                                                                                         GCGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCAGGG   >  SRR4302543.2136108/1‑94 (MQ=60)

                                                                                          CGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCAGGGG  >  SRR4302543.1273311/1‑94 (MQ=60)

                                                                                          CGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCAGGGC  >  SRR4302543.6482302/1‑94 (MQ=60)

                                                                                          CGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCAGGGC  >  SRR4302543.5538699/1‑94 (MQ=60)

                                                                                          CGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCAGGGC  >  SRR4302543.5428068/1‑94 (MQ=60)

GGGTAAATACACCAGCGTTTCGGCCTTTGCGCCAATTGTGAATCCGTGCAGCGTCCCGTGGGGAATCAAAGCGTTTAGCAGCTATTTAGGTGAGGACAAAAATGCATGGCTGGAATGGGACAGTTGCGCACTGATGTATGCCAGTAACGCGCAGGATGCGATCCCGACGCTTATCGATCAGGGC  >  NC_000913/2242406‑2242589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`