Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,246,351 T→C S68G (AGT→GGT)  lysP ← lysine‑specific permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,246,3510TC100.0% 516.6 / NA 165S68G (AGT→GGT) lysPlysine‑specific permease
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (83/82);  total (83/82)

Only 100 of 169 total aligned reads displayed.

GCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGG  >  NC_000913/2246261‑2246440
                                                                                          |                                                                                         
gcgcGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCgg                                                                                         <  1:2875582/93‑1 (MQ=255)
 cgcgAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGt                                                                                        >  2:2956414/1‑93 (MQ=255)
  gcgAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGtc                                                                                       >  1:3211423/1‑93 (MQ=255)
    gAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGtcat                                                                                     >  1:3752909/1‑93 (MQ=255)
     aaGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGtcatc                                                                                    >  1:2489831/1‑93 (MQ=255)
     aaGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGtcatc                                                                                    >  2:1045629/1‑93 (MQ=255)
      aGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGtcatca                                                                                   <  1:975884/93‑1 (MQ=255)
       gCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAg                                                                                  >  1:1928960/1‑93 (MQ=255)
         cAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGa                                                                                >  2:4401050/1‑93 (MQ=255)
         cAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGa                                                                                <  1:1174251/93‑1 (MQ=255)
         cAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGa                                                                                <  1:1350355/93‑1 (MQ=255)
         cAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGa                                                                                >  1:4645341/1‑93 (MQ=255)
          aaaGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGaa                                                                               >  2:3970910/1‑93 (MQ=255)
          aaaGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGaa                                                                               >  1:1507936/1‑93 (MQ=255)
          aaaGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATACATGCAGCCAGTTCACCGAGACCGGTCATCAGGaa                                                                               >  1:523639/1‑93 (MQ=255)
           aaGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAGCGGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAg                                                                              <  2:496232/93‑1 (MQ=255)
           aaGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAg                                                                              >  1:2115863/1‑93 (MQ=255)
            aGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGt                                                                             >  2:1358128/1‑93 (MQ=255)
            aGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGt                                                                             <  2:1745270/93‑1 (MQ=255)
              ccTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTaa                                                                           <  1:3868220/93‑1 (MQ=255)
               cttcttCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGGAGTaca                                                                          >  2:1493007/1‑91 (MQ=255)
               cttcttCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTaaa                                                                          >  2:356213/1‑93 (MQ=255)
               cttcttCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTaaa                                                                          >  2:4267840/1‑93 (MQ=255)
                ttcttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAc                                                                         >  2:3406840/1‑93 (MQ=255)
                ttcttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAc                                                                         <  2:373469/93‑1 (MQ=255)
                ttcttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAc                                                                         >  1:2970431/1‑93 (MQ=255)
                 tcttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAcc                                                                        <  1:3461355/93‑1 (MQ=255)
                  cttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCa                                                                       <  1:1421697/93‑1 (MQ=255)
                   ttcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCAt                                                                      <  1:722349/93‑1 (MQ=255)
                    tcAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATc                                                                     >  1:1651940/1‑93 (MQ=255)
                      aaCATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAg                                                                   <  1:1006667/93‑1 (MQ=255)
                       aCATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAgg                                                                  >  1:4358200/1‑93 (MQ=255)
                         aTAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGcc                                                                >  2:4061263/1‑93 (MQ=255)
                          tAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCa                                                               >  2:1982003/1‑93 (MQ=255)
                          tAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCa                                                               >  2:3046797/1‑93 (MQ=255)
                           acttCTGACCGTAAGTGGCAAACGAACCGGAAACCGTCATATATCCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCaa                                                              <  2:2233201/91‑1 (MQ=255)
                           aGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCaa                                                              >  1:1201463/1‑93 (MQ=255)
                             ttCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATc                                                            <  1:345066/93‑1 (MQ=255)
                             ttCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATc                                                            >  2:2818177/1‑93 (MQ=255)
                             ttCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATc                                                            <  2:247462/93‑1 (MQ=255)
                             ttCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATc                                                            <  2:813046/93‑1 (MQ=255)
                                tGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGc                                                         <  2:1448659/93‑1 (MQ=255)
                                tGACCGTAAGTGGCAAACGAACCCGAAACCGTCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGc                                                         >  1:2366232/1‑93 (MQ=255)
                                  aCCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCat                                                       <  1:2360123/93‑1 (MQ=255)
                                   ccGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCata                                                      <  2:533430/93‑1 (MQ=255)
                                    cGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCatat                                                     <  1:1676314/93‑1 (MQ=255)
                                       aaGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACg                                                  >  1:2306447/1‑93 (MQ=255)
                                        aGTGCCAACCGAACCGGAAACCGGCATATATGCAGCCAGTCCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACga                                                 <  2:2551569/93‑1 (MQ=255)
                                         gTGGCAAACGATCCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACgag                                                <  1:866320/93‑1 (MQ=255)
                                         gTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAACCCATCAGGCCAATCAGCATATACgag                                                <  2:1603320/93‑1 (MQ=255)
                                          tGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACgaga                                               <  2:4037485/93‑1 (MQ=255)
                                          gggCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACgaga                                               <  1:100422/92‑1 (MQ=255)
                                           ggCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGagag                                              <  1:3022891/93‑1 (MQ=255)
                                           ggCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGagag                                              <  1:83223/93‑1 (MQ=255)
                                           ggCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGagag                                              <  1:2124395/93‑1 (MQ=255)
                                            gCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGc                                             <  1:2079749/93‑1 (MQ=255)
                                              aaaCGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCaa                                           <  1:4280076/93‑1 (MQ=255)
                                               aaCGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAAt                                          <  1:1338104/93‑1 (MQ=255)
                                                aCGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATg                                         <  1:3786325/93‑1 (MQ=255)
                                                aCGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATg                                         <  2:2828302/93‑1 (MQ=255)
                                                aCGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATg                                         <  1:3889610/93‑1 (MQ=255)
                                                 cGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGATACCGGTCATCAGGAAATAAACCATCAGGCCAATCAGCATATACGAGAGCAATGc                                        <  1:2916231/93‑1 (MQ=255)
                                                  gAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGcc                                       >  2:705071/1‑93 (MQ=255)
                                                   aaCCGGAAGCCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGccc                                      <  1:2726608/93‑1 (MQ=255)
                                                    aCCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGcccc                                     >  1:2437673/1‑93 (MQ=255)
                                                     ccGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAGCATCAGGCCAATCAGCATATACGAGAGCAATGAcccg                                    >  2:2011601/1‑93 (MQ=255)
                                                       ggAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCcccgcc                                  >  2:2943710/1‑93 (MQ=255)
                                                       ggAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGAATATACGAGAACAATGCcccgcc                                  >  1:1536544/1‑93 (MQ=255)
                                                          aaCCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCgg                               >  2:2705466/1‑93 (MQ=255)
                                                           aCCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGa                              >  2:2140380/1‑93 (MQ=255)
                                                           aCCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGa                              >  1:3549547/1‑93 (MQ=255)
                                                                cATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAcctgc                         <  2:2805784/93‑1 (MQ=255)
                                                                cATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAcctgc                         <  2:1276825/93‑1 (MQ=255)
                                                                 atatatGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAcctgcc                        <  2:1788462/93‑1 (MQ=255)
                                                                  tatatGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAcctgcct                       >  1:1062682/1‑93 (MQ=255)
                                                                  tatatGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAcctgcct                       <  1:4128480/93‑1 (MQ=255)
                                                                   atatGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAcctgcctg                      <  2:695299/93‑1 (MQ=255)
                                                                      tGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTgaga                   <  2:3269684/93‑1 (MQ=255)
                                                                       gCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCATCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGaa                  <  2:1715656/93‑1 (MQ=255)
                                                                       gCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGaa                  >  1:1526178/1‑93 (MQ=255)
                                                                        cAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGaaa                 <  1:2558616/93‑1 (MQ=255)
                                                                         aGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAAt                <  1:3694076/93‑1 (MQ=255)
                                                                          gCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATc               >  2:893892/1‑93 (MQ=255)
                                                                          gCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATc               >  1:608147/1‑93 (MQ=255)
                                                                            cAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGt             <  2:3354991/93‑1 (MQ=255)
                                                                              gTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTg           >  2:3792384/1‑93 (MQ=255)
                                                                              gTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTg           >  2:2249846/1‑93 (MQ=255)
                                                                              gTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTg           >  2:2328933/1‑93 (MQ=255)
                                                                              gTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTg           >  1:3992890/1‑93 (MQ=255)
                                                                               ttCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTgc          >  2:3917234/1‑93 (MQ=255)
                                                                               gtCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTgc          <  1:1277241/92‑1 (MQ=255)
                                                                                 cACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTgcgc        <  1:585974/93‑1 (MQ=255)
                                                                                 cACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTgcgc        >  2:1246953/1‑93 (MQ=255)
                                                                                  aCCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGcc       >  2:425159/1‑93 (MQ=255)
                                                                                    cGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCag     >  1:4027962/1‑93 (MQ=255)
                                                                                     gagaCCGGTCATCTGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCaga    >  2:4502968/1‑93 (MQ=255)
                                                                                     gagaCCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCaga    <  1:485546/93‑1 (MQ=255)
                                                                                     gagaCCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCaga    >  1:3258425/1‑93 (MQ=255)
                                                                                      agaCCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCagag   <  1:2848405/93‑1 (MQ=255)
                                                                                      agaCCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCagag   >  2:2405016/1‑93 (MQ=255)
                                                                                          |                                                                                         
GCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGG  >  NC_000913/2246261‑2246440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAAC  >  NC_000913/2246258‑2246444
                                                                                             |                                                                                             
CCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACC                                                                                               <  SRR4302535.2730496/94‑1 (MQ=60)
 CAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCG                                                                                              >  SRR4302535.2437406/1‑94 (MQ=60)
 CAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCG                                                                                              <  SRR4302535.2645295/94‑1 (MQ=60)
   GCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGT                                                                                            <  SRR4302535.2895952/94‑1 (MQ=60)
    CGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTC                                                                                           >  SRR4302535.3233665/1‑94 (MQ=60)
      CGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCAT                                                                                         >  SRR4302535.3778880/1‑94 (MQ=60)
       GAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATC                                                                                        >  SRR4302535.2507789/1‑94 (MQ=60)
        AAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCA                                                                                       <  SRR4302535.1795219/94‑1 (MQ=60)
         AGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAG                                                                                      <  SRR4302535.982811/94‑1 (MQ=60)
         AGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAG                                                                                      <  SRR4302535.2595160/94‑1 (MQ=60)
         AGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAG                                                                                      >  SRR4302535.1942863/1‑94 (MQ=60)
          GCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGG                                                                                     <  SRR4302535.3683669/94‑1 (MQ=60)
           CCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGA                                                                                    >  SRR4302535.4676820/1‑94 (MQ=60)
            CAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAA                                                                                   <  SRR4302535.138664/94‑1 (MQ=60)
            CAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAA                                                                                   >  SRR4302535.1518777/1‑94 (MQ=60)
            CAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAA                                                                                   <  SRR4302535.1360000/94‑1 (MQ=60)
            CAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAA                                                                                   <  SRR4302535.1182633/94‑1 (MQ=60)
            CAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATACATGCAGCCAGTTCACCGAGACCGGTCATCAGGAA                                                                                   >  SRR4302535.527299/1‑94 (MQ=60)
             AAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAG                                                                                  >  SRR4302535.4190414/1‑94 (MQ=60)
             AAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAG                                                                                  >  SRR4302535.2131133/1‑94 (MQ=60)
                 CCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAA                                                                              <  SRR4302535.3894812/94‑1 (MQ=60)
                  CTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAAC                                                                             >  SRR4302535.2991281/1‑94 (MQ=60)
                    TCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCA                                                                           <  SRR4302535.3485421/94‑1 (MQ=60)
                    TCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCA                                                                           >  SRR4302535.4321440/1‑94 (MQ=60)
                     CTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCAT                                                                          <  SRR4302535.1431848/94‑1 (MQ=60)
                      TTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATC                                                                         >  SRR4302535.1663886/1‑94 (MQ=60)
                      TTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATC                                                                         <  SRR4302535.727421/94‑1 (MQ=60)
                        CAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAG                                                                       >  SRR4302535.1315162/1‑94 (MQ=60)
                         AACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGG                                                                      >  SRR4302535.4388036/1‑94 (MQ=60)
                         AACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGG                                                                      <  SRR4302535.1013823/94‑1 (MQ=60)
                           CATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCC                                                                    >  SRR4302535.2423774/1‑94 (MQ=60)
                           CATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCC                                                                    <  SRR4302535.3948120/94‑1 (MQ=60)
                             TAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAA                                                                  >  SRR4302535.1210068/1‑94 (MQ=60)
                                TTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCA                                                               <  SRR4302535.347444/94‑1 (MQ=60)
                                  CTGACCGTAAGTGGCAAACGAACCCGAAACCGTCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGC                                                             >  SRR4302535.2383218/1‑94 (MQ=60)
                                    GACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCAT                                                           >  SRR4302535.2912011/1‑94 (MQ=60)
                                     ACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATA                                                          <  SRR4302535.2377059/94‑1 (MQ=60)
                                      CCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATAT                                                         <  SRR4302535.1625524/94‑1 (MQ=60)
                                       CGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATA                                                        >  SRR4302535.3572141/1‑94 (MQ=60)
                                       CGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATA                                                        <  SRR4302535.1688454/94‑1 (MQ=60)
                                         TAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACG                                                      >  SRR4302535.2322943/1‑94 (MQ=60)
                                          AAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGA                                                     <  SRR4302535.2948164/94‑1 (MQ=60)
                                           AGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAG                                                    <  SRR4302535.3820033/94‑1 (MQ=60)
                                           AGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAG                                                    <  SRR4302535.2479300/94‑1 (MQ=60)
                                            GTGGCAAACGATCCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGA                                                   <  SRR4302535.872447/94‑1 (MQ=60)
                                             TGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAG                                                  <  SRR4302535.4031575/94‑1 (MQ=60)
                                             GGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAG                                                  <  SRR4302535.101129/94‑1 (MQ=60)
                                              GGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGC                                                 <  SRR4302535.83811/94‑1 (MQ=60)
                                              GGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGC                                                 <  SRR4302535.2139707/94‑1 (MQ=60)
                                              GGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGC                                                 <  SRR4302535.3044058/94‑1 (MQ=60)
                                               GCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCA                                                <  SRR4302535.2094733/94‑1 (MQ=60)
                                                CAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAA                                               <  SRR4302535.379637/94‑1 (MQ=60)
                                                CAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAA                                               <  SRR4302535.1211363/94‑1 (MQ=60)
                                                 AAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAAT                                              <  SRR4302535.4309363/94‑1 (MQ=60)
                                                  AACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATG                                             <  SRR4302535.1347649/94‑1 (MQ=60)
                                                  AACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATG                                             >  SRR4302535.753012/1‑94 (MQ=60)
                                                   ACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGC                                            <  SRR4302535.3916279/94‑1 (MQ=60)
                                                   ACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGC                                            <  SRR4302535.3812443/94‑1 (MQ=60)
                                                    CGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGATACCGGTCATCAGGAAATAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCC                                           <  SRR4302535.2936822/94‑1 (MQ=60)
                                                      AACCGGAAGCCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCC                                         <  SRR4302535.2746083/94‑1 (MQ=60)
                                                      AACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCC                                         >  SRR4302535.2455233/1‑94 (MQ=60)
                                                       ACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCG                                        >  SRR4302535.2323886/1‑94 (MQ=60)
                                                         CGGAAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGAATATACGAGAACAATGCCCCGCC                                      >  SRR4302535.1547615/1‑94 (MQ=60)
                                                            AAACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGG                                   >  SRR4302535.631787/1‑94 (MQ=60)
                                                             AACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGA                                  >  SRR4302535.3574182/1‑94 (MQ=60)
                                                              ACCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGAC                                 <  SRR4302535.3023020/94‑1 (MQ=60)
                                                               CCGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACAAGAGCAATGCCCCGCCCGGACC                                >  SRR4302535.3243986/1‑94 (MQ=60)
                                                                CGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCT                               <  SRR4302535.1162035/94‑1 (MQ=60)
                                                                CGGCATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCT                               <  SRR4302535.585883/94‑1 (MQ=60)
                                                                    ATATATGCATCCAGTTCGCCGAGACCGTTCATCAGGAAGTAATCCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCT                           <  SRR4302535.1033661/94‑1 (MQ=60)
                                                                    ATATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCT                           >  SRR4302535.1070245/1‑94 (MQ=60)
                                                                     TATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTG                          <  SRR4302535.4156731/94‑1 (MQ=60)
                                                                      ATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGA                         >  SRR4302535.2251072/1‑94 (MQ=60)
                                                                      ATATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGA                         >  SRR4302535.206819/1‑94 (MQ=60)
                                                                       TATGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAG                        <  SRR4302535.4559964/94‑1 (MQ=60)
                                                                         TGCAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAA                      >  SRR4302535.1537174/1‑94 (MQ=60)
                                                                           CAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAAT                    <  SRR4302535.2577034/94‑1 (MQ=60)
                                                                           CAGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAAT                    <  SRR4302535.1546709/94‑1 (MQ=60)
                                                                            AGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATC                   >  SRR4302535.612388/1‑94 (MQ=60)
                                                                            AGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATC                   <  SRR4302535.946024/94‑1 (MQ=60)
                                                                            AGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATC                   <  SRR4302535.3719646/94‑1 (MQ=60)
                                                                            AGCCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATC                   >  SRR4302535.2846825/1‑94 (MQ=60)
                                                                              CCAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGT                 >  SRR4302535.512043/1‑94 (MQ=60)
                                                                               CAGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTT                <  SRR4302535.1509549/94‑1 (MQ=60)
                                                                                AGTTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTG               >  SRR4302535.4020203/1‑94 (MQ=60)
                                                                                  GTCACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCG             <  SRR4302535.1286363/94‑1 (MQ=60)
                                                                                    CACCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCC           <  SRR4302535.590080/94‑1 (MQ=60)
                                                                                      CCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAG         >  SRR4302535.4055524/1‑94 (MQ=60)
                                                                                      CCGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAG         >  SRR4302535.2119708/1‑94 (MQ=60)
                                                                                       CGAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGA        >  SRR4302535.3281071/1‑94 (MQ=60)
                                                                                        GAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGATCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAG       <  SRR4302535.3330886/94‑1 (MQ=60)
                                                                                        GAGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAG       <  SRR4302535.488949/94‑1 (MQ=60)
                                                                                         AGACCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGG      <  SRR4302535.2868591/94‑1 (MQ=60)
                                                                                            CCGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAA   >  SRR4302535.431849/1‑94 (MQ=60)
                                                                                             CGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAAC  >  SRR4302535.3554110/1‑94 (MQ=60)
                                                                                             |                                                                                             
CCAGCGCGAAGCCAAAGCCTTCTTCAACATAGTTCTGACCGTAAGTGGCAAACGAACCGGAAACCGGCATATATGCAGCCAGTTCACCGAGACTGGTCATCAGGAAGTAAACCATCAGGCCAATCAGCATATACGAGAGCAATGCCCCGCCCGGACCTGCCTGAGAAATCGTTGCGCCAGAGGCAAC  >  NC_000913/2246258‑2246444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑