Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,247,350 |
T→C |
S97G (AGT→GGT) |
yeiE ← |
putative transcriptional regulator LYSR‑type |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,247,350 | 0 | T | C | 99.2%
| 420.0
/ ‑4.7
| 132 | S97G (AGT→GGT) | yeiE | putative transcriptional regulator LYSR‑type |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (56/75); total (56/76) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.04e-01 |
Only 100 of 143 total aligned reads displayed.
TATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACTACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGAT > NC_000913/2247260‑2247439
|
tATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGtaccac > 1:1780014/1‑93 (MQ=255)
tATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGtaccac > 1:500397/1‑93 (MQ=255)
aTTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTaccact < 2:4425788/93‑1 (MQ=255)
aTTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTaccact > 2:1584457/1‑93 (MQ=255)
aTTCCCAACGCTAAGTTCAATCGGCAACTGCGGAGAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTaccact < 2:4592964/93‑1 (MQ=255)
ttCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTg > 1:4230628/1‑93 (MQ=255)
tCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTgg < 1:229839/93‑1 (MQ=255)
cccAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGc > 2:2820652/1‑93 (MQ=255)
cccAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGc < 1:1617718/93‑1 (MQ=255)
ccAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCa < 2:4593675/93‑1 (MQ=255)
ccAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCa < 1:887287/93‑1 (MQ=255)
ccAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCa > 2:1683086/1‑93 (MQ=255)
cAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCAt > 2:3852371/1‑93 (MQ=255)
aCGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAg > 2:2947435/1‑93 (MQ=255)
cGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATATCTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGa < 1:2521345/93‑1 (MQ=255)
cGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGa < 2:3730179/93‑1 (MQ=255)
cGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGa < 2:118136/93‑1 (MQ=255)
tAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGCTAc > 2:1508012/1‑93 (MQ=255)
tAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATAc > 2:2870044/1‑93 (MQ=255)
tAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATAc < 1:3179150/93‑1 (MQ=255)
tAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTAACACTGGCATTGagag > 1:1496715/1‑90 (MQ=255)
aaaGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATAc < 1:195548/92‑1 (MQ=255)
gTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGaa > 2:3550151/1‑93 (MQ=255)
gTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGaa > 2:150128/1‑93 (MQ=255)
gTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGaa < 1:1436107/93‑1 (MQ=255)
cAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATcg > 1:1616123/1‑93 (MQ=255)
cAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATcg < 1:2623951/93‑1 (MQ=255)
cAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATcg > 2:505797/1‑93 (MQ=255)
cGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGcc < 1:1516156/93‑1 (MQ=255)
gCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTAGCATAGATACGAATCGCGCCGt > 1:1060089/1‑93 (MQ=255)
cAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGtt < 2:2617327/93‑1 (MQ=255)
aaCTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTg > 1:4162709/1‑93 (MQ=255)
aaCTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTg < 1:4312090/93‑1 (MQ=255)
aCTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGt > 1:2968119/1‑93 (MQ=255)
aCTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGt < 1:4506034/93‑1 (MQ=255)
cTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTc < 2:1305878/93‑1 (MQ=255)
cTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTc > 1:1300644/1‑93 (MQ=255)
cTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTc > 1:108992/1‑93 (MQ=255)
cTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACAGATGGTACCACTGGCATAGATACGAGTCGCGCCGTTGTc < 2:1670709/93‑1 (MQ=255)
tGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCt > 1:1058456/1‑93 (MQ=255)
cGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTc < 2:3071840/93‑1 (MQ=255)
ggATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTcg > 1:2735453/1‑93 (MQ=255)
aaTCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGaa < 2:2041147/93‑1 (MQ=255)
aaTCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGaa > 1:652920/1‑93 (MQ=255)
aTCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGaaa < 1:2654728/93‑1 (MQ=255)
cATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACa < 2:3791832/93‑1 (MQ=255)
cATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACa < 2:4256861/93‑1 (MQ=255)
aTGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAg < 1:695700/93‑1 (MQ=255)
tGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgt < 1:138078/93‑1 (MQ=255)
ggCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgtt < 1:2178522/93‑1 (MQ=255)
ggCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgtt < 1:192723/93‑1 (MQ=255)
ggCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgtt < 2:2412952/93‑1 (MQ=255)
gCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgttg < 1:2892792/93‑1 (MQ=255)
gCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgttg < 2:2963145/93‑1 (MQ=255)
gATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgttgtt < 1:3603144/93‑1 (MQ=255)
gATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgttgtt < 1:2870044/93‑1 (MQ=255)
gATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgttgtt > 2:3185813/1‑93 (MQ=255)
gATAACGGGCGATAACTGCAGGCAGAATATAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAgatgtt > 1:3946151/1‑93 (MQ=255)
aTAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTc < 2:1258559/93‑1 (MQ=255)
aTAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTc > 1:3928382/1‑93 (MQ=255)
aTAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTc > 2:2671834/1‑93 (MQ=255)
aTAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTc > 2:2725032/1‑93 (MQ=255)
aaCGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGa < 2:1638292/93‑1 (MQ=255)
aCGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGAt < 2:1063201/93‑1 (MQ=255)
gggCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGAttt > 2:2410042/1‑93 (MQ=255)
gggCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGAttt < 1:2382171/93‑1 (MQ=255)
gggCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGAttt < 1:206539/93‑1 (MQ=255)
cGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCaa < 1:4294368/93‑1 (MQ=255)
gATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAAc < 1:3361469/93‑1 (MQ=255)
gATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAAc > 1:349735/1‑93 (MQ=255)
gATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAAc < 1:129850/93‑1 (MQ=255)
gATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAAc < 2:510378/93‑1 (MQ=255)
tAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCg > 2:2425279/1‑93 (MQ=255)
tAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCg > 1:517095/1‑93 (MQ=255)
aaCTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGc < 1:3085442/93‑1 (MQ=255)
cTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCt > 1:1757086/1‑93 (MQ=255)
caggcagAATGTATTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGtt < 1:3424788/93‑1 (MQ=255)
caggcagAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGCAACAGTTGTTCGATTTCAAACGCCTGtt > 2:965759/1‑93 (MQ=255)
caggcagAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGtt < 2:2228708/93‑1 (MQ=255)
ggcagAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCa > 2:875297/1‑93 (MQ=255)
gcagAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCaa > 2:3906975/1‑93 (MQ=255)
cagAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAg > 1:4111304/1‑93 (MQ=255)
cagAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAg < 1:4666233/93‑1 (MQ=255)
gAATGTAGTTCCCGATGGTCCCACTGGCATAGATACGAATCGCGCCGTTGTCTGCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCa < 2:421640/93‑1 (MQ=255)
aaTGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCaa < 1:840918/93‑1 (MQ=255)
aTGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAAt > 2:962120/1‑93 (MQ=255)
gTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGc > 2:1293862/1‑93 (MQ=255)
gTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCCTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGc > 1:3301907/1‑93 (MQ=255)
gTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCaa < 2:1870959/93‑1 (MQ=255)
ttACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAac < 2:3417271/93‑1 (MQ=255)
ttACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAac < 2:862900/93‑1 (MQ=255)
aCCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAacgc < 1:1509324/93‑1 (MQ=255)
ccGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAacgca < 1:4538364/93‑1 (MQ=255)
ccGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAacgca < 1:2127355/93‑1 (MQ=255)
gATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAacgcacg > 1:1885365/1‑93 (MQ=255)
gATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAacgcacg > 1:3606892/1‑93 (MQ=255)
aTGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGGAATGCCAacgcacgc > 2:3157425/1‑93 (MQ=255)
aTGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAacgcacgc > 2:181583/1‑93 (MQ=255)
tGGTACCACTGGCATAGATACGAATCGCGCCGGTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCAcgcg > 1:2384995/1‑93 (MQ=255)
gTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACCGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGa > 2:1587516/1‑93 (MQ=255)
|
TATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACTACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGAT > NC_000913/2247260‑2247439
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACTACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGATAG > NC_000913/2247258‑2247441
|
GCTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCA > SRR4302535.2834074/1‑94 (MQ=60)
CTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCAC > SRR4302535.503901/1‑94 (MQ=60)
CTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCAC > SRR4302535.1792900/1‑94 (MQ=60)
TATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACT > SRR4302535.4465940/1‑94 (MQ=60)
ATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTG > SRR4302535.4259578/1‑94 (MQ=60)
TCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGC < SRR4302535.231422/94‑1 (MQ=60)
CCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCA < SRR4302535.1629371/94‑1 (MQ=60)
CCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCAGGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCA < SRR4302535.166564/94‑1 (MQ=60)
CCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCAT > SRR4302535.4274414/1‑94 (MQ=60)
CCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCAT < SRR4302535.893570/94‑1 (MQ=60)
CGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATATCTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGAT < SRR4302535.2539512/94‑1 (MQ=60)
GCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATA > SRR4302535.2744108/1‑94 (MQ=60)
CTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATAC < SRR4302535.1236535/94‑1 (MQ=60)
CTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATAC > SRR4302535.131817/1‑94 (MQ=60)
TAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACG < SRR4302535.3201132/94‑1 (MQ=60)
AAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACG < SRR4302535.196893/94‑1 (MQ=60)
GTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAAT < SRR4302535.1446369/94‑1 (MQ=60)
GTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAAT < SRR4302535.3352412/94‑1 (MQ=60)
TCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCG > SRR4302535.1627770/1‑94 (MQ=60)
CAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGC < SRR4302535.2642757/94‑1 (MQ=60)
CGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCG < SRR4302535.1527077/94‑1 (MQ=60)
GGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTAGCATAGATACGAATCGCGCCGT > SRR4302535.1067637/1‑94 (MQ=60)
CAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTG > SRR4302535.4191203/1‑94 (MQ=60)
AACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGT > SRR4302535.2178163/1‑94 (MQ=60)
AACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGT < SRR4302535.4341590/94‑1 (MQ=60)
AACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGT > SRR4302535.2988949/1‑94 (MQ=60)
ACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTC > SRR4302535.109762/1‑94 (MQ=60)
ACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTC > SRR4302535.1309918/1‑94 (MQ=60)
ACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTC < SRR4302535.4536966/94‑1 (MQ=60)
CTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCT > SRR4302535.1065990/1‑94 (MQ=60)
CGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCG < SRR4302535.2031641/94‑1 (MQ=60)
CGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCG > SRR4302535.4245321/1‑94 (MQ=60)
CGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCG > SRR4302535.2754969/1‑94 (MQ=60)
TAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAA > SRR4302535.657474/1‑94 (MQ=60)
AATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAA > SRR4302535.798996/1‑94 (MQ=60)
ATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAAC < SRR4302535.2673749/94‑1 (MQ=60)
ATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAAC > SRR4302535.3882084/1‑94 (MQ=60)
ATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCaccacgca > SRR4302535.1393441/1‑86 (MQ=60)
ATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGT < SRR4302535.700580/94‑1 (MQ=60)
TGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTT < SRR4302535.139044/94‑1 (MQ=60)
GGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTG < SRR4302535.2194080/94‑1 (MQ=60)
GGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTG < SRR4302535.194050/94‑1 (MQ=60)
GCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGT < SRR4302535.2913255/94‑1 (MQ=60)
CGATAACGGGCGATAACTGCAGGCAGAATATAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGATGTT > SRR4302535.3973099/1‑94 (MQ=60)
GATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTC < SRR4302535.2890374/94‑1 (MQ=60)
GATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTC > SRR4302535.3955215/1‑94 (MQ=60)
GATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTC < SRR4302535.3628147/94‑1 (MQ=60)
ATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCG < SRR4302535.2551207/94‑1 (MQ=60)
GGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTC < SRR4302535.207957/94‑1 (MQ=60)
GGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTC < SRR4302535.2399277/94‑1 (MQ=60)
GGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCA < SRR4302535.1504698/94‑1 (MQ=60)
CGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAAC > SRR4302535.352143/1‑94 (MQ=60)
CGATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAAC < SRR4302535.4323752/94‑1 (MQ=60)
GATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACC < SRR4302535.130764/94‑1 (MQ=60)
GATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACC < SRR4302535.3384862/94‑1 (MQ=60)
GATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACC < SRR4302535.4577185/94‑1 (MQ=60)
ATAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCG > SRR4302535.520712/1‑94 (MQ=60)
TAACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGC > SRR4302535.2902830/1‑94 (MQ=60)
AACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCC < SRR4302535.3106935/94‑1 (MQ=60)
ACTGCAGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCT > SRR4302535.1769788/1‑94 (MQ=60)
CAGGCAGAATGTATTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTC < SRR4302535.3448604/94‑1 (MQ=60)
AGGCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCA > SRR4302535.4078202/1‑94 (MQ=60)
GCAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAG > SRR4302535.4139446/1‑94 (MQ=60)
CAGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGC < SRR4302535.4697775/94‑1 (MQ=60)
AGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCA < SRR4302535.893954/94‑1 (MQ=60)
AGAATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCA < SRR4302535.2331032/94‑1 (MQ=60)
AATGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAAT < SRR4302535.846820/94‑1 (MQ=60)
TGTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCCTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGC > SRR4302535.3324867/1‑94 (MQ=60)
GTAGTTACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCC < SRR4302535.3519278/94‑1 (MQ=60)
TACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGC < SRR4302535.1879220/94‑1 (MQ=60)
ACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCA < SRR4302535.515221/94‑1 (MQ=60)
ACCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCA < SRR4302535.1520198/94‑1 (MQ=60)
CCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCAC < SRR4302535.4569410/94‑1 (MQ=60)
CCGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCAC < SRR4302535.2142694/94‑1 (MQ=60)
CGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACG > SRR4302535.1898950/1‑94 (MQ=60)
CGATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACG > SRR4302535.3631912/1‑94 (MQ=60)
ATGGTACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCG < SRR4302535.1548256/94‑1 (MQ=60)
ATGGTACCACTGGCATAGATACGAATCGCGCCGGTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCG > SRR4302535.2402129/1‑94 (MQ=60)
TACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGATA < SRR4302535.3156017/94‑1 (MQ=60)
ACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGATAG < SRR4302535.508990/94‑1 (MQ=60)
ACCACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGATAG > SRR4302535.4019258/1‑94 (MQ=60)
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GCTATTCCCAACGCTAAGTTCAATCGGCAACTGCGGATAATCATGGCGATAACGGGCGATAACTGCAGGCAGAATGTAGTTACCGATGGTACTACTGGCATAGATACGAATCGCGCCGTTGTCTTCGCGAAACAGTTGTTCGATTTCAACCGCCTGTTCAAGCAATGCCAACGCACGCGGATAG > NC_000913/2247258‑2247441
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
