Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,254,559 |
A→G |
V266A (GTA→GCA) |
yeiM ← |
putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,254,559 | 0 | A | G | 100.0%
| 389.0
/ NA
| 123 | V266A (GTA→GCA) | yeiM | putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (87/36); total (87/36) |
Only 100 of 130 total aligned reads displayed.
TTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTACCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTG > NC_000913/2254471‑2254648
|
ttCTAGAGAGGCATTGGCAAACCCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTgccac < 2:4148334/93‑1 (MQ=255)
ccAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCg < 1:2321440/93‑1 (MQ=255)
agagagGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTc < 2:4363965/93‑1 (MQ=255)
agagagGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTc > 1:32289/1‑93 (MQ=255)
gagagGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCg > 1:1307482/1‑93 (MQ=255)
gagagGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCg > 1:3235922/1‑93 (MQ=255)
gagGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGcc > 2:318534/1‑93 (MQ=255)
gagGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGcc > 2:349641/1‑93 (MQ=255)
gCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCcaca > 1:2889554/1‑93 (MQ=255)
cATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCacac > 1:1960259/1‑93 (MQ=255)
aTTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACAcc > 2:4454911/1‑93 (MQ=255)
ttGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCa > 2:4662881/1‑93 (MQ=255)
ttGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCa > 1:2146202/1‑93 (MQ=255)
ttGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCa > 2:2642719/1‑93 (MQ=255)
gcaaaaccaaaccAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAgcg < 2:111208/90‑1 (MQ=255)
gAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAgcggc > 2:3308404/1‑93 (MQ=255)
gAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAgcggc > 2:2668299/1‑93 (MQ=255)
aaaccaaaccAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAgcggcg > 2:2556865/1‑93 (MQ=255)
acccaaaccaGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGa < 1:2951881/91‑1 (MQ=255)
aaccaaaccaGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGa > 2:2835950/1‑93 (MQ=255)
accaaaccaGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAt > 1:488808/1‑93 (MQ=255)
accaaaccaGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAt > 2:3014174/1‑93 (MQ=255)
accaaaccaGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAt > 1:1350771/1‑93 (MQ=255)
ccaacccaGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAtt < 1:4107603/93‑1 (MQ=255)
caaaccaGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGCttt > 2:1213237/1‑93 (MQ=255)
aacccaGCGGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAtttt < 1:1899240/90‑1 (MQ=255)
aGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGcc > 2:1887277/1‑93 (MQ=255)
aGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGcc < 1:1579687/93‑1 (MQ=255)
aGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGcc > 2:56804/1‑93 (MQ=255)
aGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGcc > 2:2261530/1‑93 (MQ=255)
gccgccAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGccc < 1:1280322/93‑1 (MQ=255)
gccgccAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGccc > 2:2022864/1‑93 (MQ=255)
gccgccAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGccc > 2:857836/1‑93 (MQ=255)
gccgccAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGccc > 2:3470113/1‑93 (MQ=255)
ccgccAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCg > 1:372516/1‑93 (MQ=255)
cgccAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCgg > 1:1288172/1‑93 (MQ=255)
cgccAATCCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCgg < 1:3460443/93‑1 (MQ=255)
cAATTCCGCCGATAATGCCGTTTATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCa < 1:1529674/93‑1 (MQ=255)
cAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCa > 2:1971931/1‑93 (MQ=255)
cAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCa < 2:4635735/93‑1 (MQ=255)
aaTTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCAt > 1:4307639/1‑93 (MQ=255)
aaTTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCAt > 2:3592868/1‑93 (MQ=255)
aTTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATc > 2:2324131/1‑93 (MQ=255)
ttCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCg > 1:1631086/1‑93 (MQ=255)
ccgccgATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCa > 2:1680072/1‑93 (MQ=255)
cgccgATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCAc < 2:1496793/93‑1 (MQ=255)
gccgATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCAcc < 1:1185610/93‑1 (MQ=255)
ccgATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCg > 1:1572895/1‑93 (MQ=255)
cgATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGc > 2:472979/1‑93 (MQ=255)
gATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCt > 1:922603/1‑93 (MQ=255)
gATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCt > 2:1749170/1‑93 (MQ=255)
gATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCt > 2:3261376/1‑93 (MQ=255)
aTAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTc > 1:664583/1‑93 (MQ=255)
cGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTcgccgccg > 1:4666711/1‑93 (MQ=255)
cGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTcgccgccg > 2:3483456/1‑93 (MQ=255)
gTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTcgccgccgt > 1:2116300/1‑92 (MQ=255)
gTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTcgccgccgc > 1:2008118/1‑93 (MQ=255)
ttGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCt > 1:1935400/1‑93 (MQ=255)
gATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTc > 2:2885674/1‑93 (MQ=255)
gATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTc > 2:775725/1‑93 (MQ=255)
aTCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCg > 1:2736907/1‑93 (MQ=255)
tCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGa < 2:4113267/93‑1 (MQ=255)
tCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGa > 1:2537924/1‑93 (MQ=255)
tCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGa < 2:577128/93‑1 (MQ=255)
tCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGa > 1:4477578/1‑93 (MQ=255)
cAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGAt < 2:4447236/93‑1 (MQ=255)
aGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATa < 2:783688/93‑1 (MQ=255)
aGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATa > 1:4579768/1‑93 (MQ=255)
cgcAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATaaa < 2:577594/93‑1 (MQ=255)
cgcAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATaaa < 1:181108/93‑1 (MQ=255)
cgcAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATaaa < 2:2051955/93‑1 (MQ=255)
gcAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAg > 2:517859/1‑93 (MQ=255)
aataatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCt > 2:3259935/1‑93 (MQ=255)
aataatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCt < 2:2447499/93‑1 (MQ=255)
ataatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCtt < 2:3916257/93‑1 (MQ=255)
ataatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCtt > 2:3985218/1‑93 (MQ=255)
ataatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCtt > 1:174249/1‑93 (MQ=255)
ataatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCtt > 1:4128290/1‑93 (MQ=255)
ataatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCtt > 1:419116/1‑93 (MQ=255)
taatTGCGCCAAACGCCATTGCCTCCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCttt < 2:723659/93‑1 (MQ=255)
taatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCttt > 2:191483/1‑93 (MQ=255)
taatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCttt > 1:1413519/1‑93 (MQ=255)
aatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCtttt > 1:3430246/1‑93 (MQ=255)
atTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCttttt < 1:2538505/93‑1 (MQ=255)
atTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCttttt < 1:1661631/93‑1 (MQ=255)
atTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCttttt < 2:240070/93‑1 (MQ=255)
tGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTgg < 2:1493738/93‑1 (MQ=255)
gACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTggcgg > 1:3664216/1‑93 (MQ=255)
cAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTTgcggcg > 2:3589953/1‑93 (MQ=255)
cAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGgcggcg > 1:2128789/1‑93 (MQ=255)
aaaCGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGt > 2:142453/1‑93 (MQ=255)
aaCGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGtt > 2:423198/1‑93 (MQ=255)
aCGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGttt < 1:2289750/93‑1 (MQ=255)
aCGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGttt < 1:4087508/93‑1 (MQ=255)
cGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTc < 2:2995047/93‑1 (MQ=255)
cGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTc < 2:2993243/93‑1 (MQ=255)
cGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTc < 1:3204978/93‑1 (MQ=255)
gCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCg > 2:2322936/1‑93 (MQ=255)
gCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCg > 2:897143/1‑93 (MQ=255)
cATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCt > 2:886268/1‑93 (MQ=255)
|
TTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTACCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTG > NC_000913/2254471‑2254648
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATACTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTACCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTGAACG > NC_000913/2254466‑2254652
|
ATACTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTG > SRR4302535.247835/1‑94 (MQ=60)
TCCTTTCCAGAGAGGCATTGGCGAAACCAACCCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGC < SRR4302535.4386226/94‑1 (MQ=60)
ACTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCC < SRR4302535.411626/94‑1 (MQ=60)
TTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACC > SRR4302535.4075838/1‑94 (MQ=60)
CCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGT < SRR4302535.2338054/94‑1 (MQ=60)
CCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGC > SRR4302535.4192608/1‑94 (MQ=60)
CAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTC > SRR4302535.32538/1‑94 (MQ=60)
AGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCG > SRR4302535.3258383/1‑94 (MQ=60)
AGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCG > SRR4302535.1316821/1‑94 (MQ=60)
GGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACA > SRR4302535.2909997/1‑94 (MQ=60)
GCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACAC > SRR4302535.1974399/1‑94 (MQ=60)
CATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACC < SRR4302535.298745/94‑1 (MQ=60)
ATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCA > SRR4302535.2161642/1‑94 (MQ=60)
ACCCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAT < SRR4302535.2972617/94‑1 (MQ=60)
AACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAT > SRR4302535.1360418/1‑94 (MQ=60)
AACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAT > SRR4302535.492233/1‑94 (MQ=60)
CCAACCCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTT < SRR4302535.4135730/94‑1 (MQ=60)
AACCCAGCGGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTT < SRR4302535.1912906/94‑1 (MQ=60)
AGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCC < SRR4302535.1591092/94‑1 (MQ=60)
AGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCC < SRR4302535.1668732/94‑1 (MQ=60)
AGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCC > SRR4302535.4514105/1‑94 (MQ=60)
GCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCG < SRR4302535.1289461/94‑1 (MQ=60)
GCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCG > SRR4302535.375094/1‑94 (MQ=60)
CCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGG > SRR4302535.1297350/1‑94 (MQ=60)
CGCCAATCCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGT < SRR4302535.3484502/94‑1 (MQ=60)
CAATTCCGCCGATAATGCCGTTTATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCAT < SRR4302535.1540694/94‑1 (MQ=60)
CAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCAT > SRR4302535.3397389/1‑94 (MQ=60)
CAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCAT > SRR4302535.4337107/1‑94 (MQ=60)
ATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCG > SRR4302535.1642867/1‑94 (MQ=60)
CCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCAC > SRR4302535.759712/1‑94 (MQ=60)
GCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCG > SRR4302535.1584247/1‑94 (MQ=60)
GCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCG < SRR4302535.1194079/94‑1 (MQ=60)
CGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCT > SRR4302535.929141/1‑94 (MQ=60)
GATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTC > SRR4302535.669226/1‑94 (MQ=60)
CCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCG > SRR4302535.2653242/1‑94 (MQ=60)
CCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCG > SRR4302535.4698254/1‑94 (MQ=60)
CGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGT > SRR4302535.2131570/1‑94 (MQ=60)
CGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGC > SRR4302535.1543764/1‑94 (MQ=60)
CGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGC > SRR4302535.2022581/1‑94 (MQ=60)
GTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCT > SRR4302535.1949339/1‑94 (MQ=60)
TTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTT < SRR4302535.2086504/94‑1 (MQ=60)
GATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCG > SRR4302535.2756429/1‑94 (MQ=60)
ATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGA > SRR4302535.4508322/1‑94 (MQ=60)
ATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGA > SRR4302535.2556206/1‑94 (MQ=60)
CAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATA > SRR4302535.4610962/1‑94 (MQ=60)
GCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAA > SRR4302535.2225603/1‑94 (MQ=60)
CGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAG < SRR4302535.182366/94‑1 (MQ=60)
CAATAATTGCGACAAACGCCATTGCCACCGGCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCT > SRR4302535.1921386/1‑94 (MQ=60)
AATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTT > SRR4302535.175454/1‑94 (MQ=60)
AATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTT > SRR4302535.4156540/1‑94 (MQ=60)
AATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTT > SRR4302535.422049/1‑94 (MQ=60)
ATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTT > SRR4302535.1423609/1‑94 (MQ=60)
TAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTT > SRR4302535.3454085/1‑94 (MQ=60)
ATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTG < SRR4302535.2556791/94‑1 (MQ=60)
ATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTG < SRR4302535.1673637/94‑1 (MQ=60)
ATTGCGACAAACCCCATGGCCGCCGTCGCCACACCAGCCGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTG < SRR4302535.549842/94‑1 (MQ=60)
CGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGG > SRR4302535.3689585/1‑94 (MQ=60)
ACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCG > SRR4302535.2144137/1‑94 (MQ=60)
ACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTC < SRR4302535.4115474/94‑1 (MQ=60)
ACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTC < SRR4302535.2306103/94‑1 (MQ=60)
CGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCG < SRR4302535.3227175/94‑1 (MQ=60)
CCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCT < SRR4302535.1350652/94‑1 (MQ=60)
GCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTGAACG < SRR4302535.1204415/94‑1 (MQ=60)
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ATACTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTACCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTGAACG > NC_000913/2254466‑2254652
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
