Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,254,559 |
A→G |
V266A (GTA→GCA) |
yeiM ← |
putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,254,559 | 0 | A | G | 99.1%
| 718.9
/ ‑5.0
| 232 | V266A (GTA→GCA) | yeiM | putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (134/96); total (136/96) |
| Fisher's exact test for biased strand distribution p-value = 5.13e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.49e-01 |
Only 100 of 254 total aligned reads displayed.
CTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTACCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTG > NC_000913/2254469‑2254648
|
cTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTgcc > 2:2700504/1‑93 (MQ=255)
cTTTCCAGAGAGGCATTGGCCAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTgcc < 2:791659/93‑1 (MQ=255)
tttCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTgcca > 1:5925/1‑93 (MQ=255)
tcccAGAGAGTCATTGGCGAAACCAACCCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTgccac < 2:312143/91‑1 (MQ=255)
tCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTgccacc < 2:6249450/93‑1 (MQ=255)
cAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGt > 1:4306618/1‑93 (MQ=255)
cAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGt > 2:2178927/1‑93 (MQ=255)
agagagGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTc < 1:3850612/93‑1 (MQ=255)
agGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCca > 2:1170218/1‑93 (MQ=255)
ggCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCcac > 2:1450598/1‑93 (MQ=255)
gCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCcaca > 1:7482664/1‑93 (MQ=255)
cATTGGCGAAACCAACCCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCacac < 1:2914304/93‑1 (MQ=255)
cATTGGCGAAACCAACCCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCacac < 1:4212132/93‑1 (MQ=255)
cATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCacac > 2:4816636/1‑93 (MQ=255)
aTTGGCGAACCCAACCCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACAcc < 2:3181804/93‑1 (MQ=255)
aTTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACAcc > 1:1267186/1‑93 (MQ=255)
ttGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCa < 1:7237360/93‑1 (MQ=255)
ttGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCa > 1:4820754/1‑93 (MQ=255)
tGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAg < 2:865454/93‑1 (MQ=255)
tccaaaccaGCCGCCAATTTCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAt > 1:7034216/2‑93 (MQ=255)
accaaaccaGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAt > 1:2243091/1‑93 (MQ=255)
aaaccaGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAtttt > 2:4590578/1‑93 (MQ=255)
aaaccaGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAtttt > 1:5045311/1‑93 (MQ=255)
accaGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTa < 1:1665842/93‑1 (MQ=255)
caGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGc > 1:1911456/1‑93 (MQ=255)
caGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGc < 2:5113813/93‑1 (MQ=255)
aGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGcc > 1:661696/1‑93 (MQ=255)
aGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGcc > 1:7925586/1‑93 (MQ=255)
aGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGcc > 1:7556362/1‑93 (MQ=255)
gccgccAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAACCGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGccc < 1:3436585/93‑1 (MQ=255)
cccgccAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGccc < 2:2394607/92‑1 (MQ=255)
cgccAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCgg > 1:6855528/1‑93 (MQ=255)
gccAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGt > 2:3436142/1‑93 (MQ=255)
ccAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTc > 1:1313462/1‑93 (MQ=255)
cAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCa > 2:1529269/1‑93 (MQ=255)
cAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCa > 2:7711515/1‑93 (MQ=255)
cAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCa < 1:5479625/93‑1 (MQ=255)
aaTTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCAt > 2:5767359/1‑93 (MQ=255)
aTTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATc > 2:3552081/1‑93 (MQ=255)
aTTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATc < 1:2828240/93‑1 (MQ=255)
ttCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCg > 2:122014/1‑93 (MQ=255)
ttCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCg > 2:5380963/1‑93 (MQ=255)
ccgccgATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCa > 2:694468/1‑93 (MQ=255)
ccgccgATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCa < 2:3794563/93‑1 (MQ=255)
gATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCt > 2:6303207/1‑93 (MQ=255)
gATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCt > 1:5175533/1‑93 (MQ=255)
gATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCt > 2:6463663/1‑93 (MQ=255)
caTAATGCCGTTGCTGAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCt < 2:1636098/92‑1 (MQ=255)
aTAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTc > 1:5001953/1‑93 (MQ=255)
tAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTcc > 1:1508829/1‑92 (MQ=255)
agtGCCGCTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCTATTTTTAGCCCGGTCATCGCACCGCTcgc < 1:2574972/91‑1 (MQ=255)
aaTGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTcgc < 2:213596/93‑1 (MQ=255)
tGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCGCCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTcgccg > 1:7843968/1‑93 (MQ=255)
tGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTcgccg > 1:3779351/1‑93 (MQ=255)
cGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTcgccgccg > 2:5757101/1‑93 (MQ=255)
cGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTcgccgccg > 1:6438098/1‑93 (MQ=255)
gTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTcgccgccgc > 2:528956/1‑93 (MQ=255)
gTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTcgccgccgc < 2:4968664/93‑1 (MQ=255)
tGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCtt < 1:3280933/93‑1 (MQ=255)
gATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTc > 2:6577212/1‑93 (MQ=255)
gATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTc > 1:4708840/1‑93 (MQ=255)
aTCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCg > 1:21781/1‑93 (MQ=255)
aTCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCg > 1:1955534/1‑93 (MQ=255)
aTCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCg > 1:1132910/1‑93 (MQ=255)
tCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGa < 1:7171104/93‑1 (MQ=255)
tCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGa > 1:677243/1‑93 (MQ=255)
aGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATa > 1:4490952/1‑93 (MQ=255)
gcgcAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATaa > 1:5322737/1‑93 (MQ=255)
gcgcAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATaa > 2:4050658/1‑93 (MQ=255)
gcgcAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATaa > 2:7650244/1‑93 (MQ=255)
gcgcAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATaa < 1:7666691/93‑1 (MQ=255)
cgcAATACTTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATaaa < 2:5369116/93‑1 (MQ=255)
cgcAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATaaa < 1:2574572/93‑1 (MQ=255)
cgcAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATaaa < 1:3584333/93‑1 (MQ=255)
aataatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCt > 1:1101960/1‑93 (MQ=255)
aataatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCt > 1:7682718/1‑93 (MQ=255)
ataatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCCCCGTTCGCCGCCGCTTCGATAAAGCtt < 2:2790628/93‑1 (MQ=255)
aatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCtttt < 1:6046379/93‑1 (MQ=255)
aatTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCtttt < 1:4048757/93‑1 (MQ=255)
atTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCttttt < 1:3971000/93‑1 (MQ=255)
ttGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTg < 1:1390234/93‑1 (MQ=255)
ttGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTg > 2:2454185/1‑93 (MQ=255)
ttGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTg < 1:4660557/93‑1 (MQ=255)
gCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTTTCCCGGTCATCGCACCCCCCGCCGCCCCCTCCCTAAAACttttttgg > 2:7094261/1‑90 (MQ=255)
gCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTggc < 2:1717444/93‑1 (MQ=255)
gCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTggc < 1:3109217/93‑1 (MQ=255)
cGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTggcg > 1:5545072/1‑93 (MQ=255)
gACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTggcgg > 2:5595436/1‑93 (MQ=255)
aCAAACGCGATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTggcggc < 2:7838005/93‑1 (MQ=255)
aaaCGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGt < 2:566152/93‑1 (MQ=255)
aaaCGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGt > 1:4216017/1‑93 (MQ=255)
aCGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGttt < 1:2460718/93‑1 (MQ=255)
aCGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGttt < 2:6097907/93‑1 (MQ=255)
cGCCATTGCCACCGTCGCCACACCAGCGGCGATTATTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTc < 1:3656586/93‑1 (MQ=255)
gCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCg > 2:1853752/1‑93 (MQ=255)
ccATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGCTAAAGCTTTTTGGCGGCGTTTCGc > 1:5848307/1‑93 (MQ=255)
cATTGCCACCGTCGCCACACCAGCGGCTATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCt < 2:1295750/93‑1 (MQ=255)
cATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCt < 1:510248/93‑1 (MQ=255)
cATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCt < 1:1579692/93‑1 (MQ=255)
aTTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTg > 2:1244988/1‑93 (MQ=255)
|
CTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTACCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTG > NC_000913/2254469‑2254648
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATACTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTACCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTGAACG > NC_000913/2254466‑2254652
|
ATACTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTG > SRR4302543.7883063/1‑94 (MQ=60)
TACTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGC > SRR4302543.7393657/1‑94 (MQ=60)
TACTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGC > SRR4302543.4352214/1‑94 (MQ=60)
TACTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGC > SRR4302543.363510/1‑94 (MQ=60)
CTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCA > SRR4302543.5977/1‑94 (MQ=60)
TTCCAGAGAGGCATTGGCGAAACCAACCCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACC < SRR4302543.4965771/94‑1 (MQ=60)
TGCCAGAAAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACC < SRR4302543.506711/94‑1 (MQ=60)
CCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGT > SRR4302543.4345743/1‑94 (MQ=60)
CAGAGAGGCATTGGCGAAACCAAACCGGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTC < SRR4302543.5355152/94‑1 (MQ=60)
AGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCG > SRR4302543.1127437/1‑94 (MQ=60)
AGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCG > SRR4302543.5416200/1‑94 (MQ=60)
AGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCG < SRR4302543.3884630/94‑1 (MQ=60)
AGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCG > SRR4302543.3483590/1‑94 (MQ=60)
AGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCG < SRR4302543.303372/94‑1 (MQ=60)
AGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCG > SRR4302543.1421700/1‑94 (MQ=60)
GAGAGGCATTGGCGAACCCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGC < SRR4302543.668209/94‑1 (MQ=60)
AGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCC > SRR4302543.629296/1‑94 (MQ=60)
AGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCC > SRR4302543.46734/1‑94 (MQ=60)
GAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACACACGCCATTGCCACCGTCGCCA > SRR4302543.5157119/1‑94 (MQ=60)
GGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACA > SRR4302543.7554283/1‑94 (MQ=60)
GGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACA > SRR4302543.7821858/1‑94 (MQ=60)
CATTGGCGAACCCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACC < SRR4302543.4250327/94‑1 (MQ=60)
CATTGGCGAAACCAACCCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACC < SRR4302543.4250326/94‑1 (MQ=60)
CATTGGCGAAACCAACCCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACC < SRR4302543.2940786/94‑1 (MQ=60)
CATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACC > SRR4302543.1278524/1‑94 (MQ=60)
ATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTTATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCA > SRR4302543.3866372/1‑94 (MQ=60)
ATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCA > SRR4302543.7024540/1‑94 (MQ=60)
ATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCA > SRR4302543.4864761/1‑94 (MQ=60)
TTGGCGAAACCAACCCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAG < SRR4302543.3663807/94‑1 (MQ=60)
TTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAG < SRR4302543.7307429/94‑1 (MQ=60)
TTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAG > SRR4302543.5760314/1‑94 (MQ=60)
TTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAG > SRR4302543.2585508/1‑94 (MQ=60)
TGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGC > SRR4302543.5918144/1‑94 (MQ=60)
GAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCG > SRR4302543.4795236/1‑94 (MQ=60)
GAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCAACGTCGCCACACCACCGGCG > SRR4302543.6966334/1‑94 (MQ=60)
AAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGA > SRR4302543.5216956/1‑94 (MQ=60)
ATCCAAACCAGCCGCCAATTTCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAT > SRR4302543.7101908/1‑94 (MQ=60)
AACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGAT > SRR4302543.2263434/1‑94 (MQ=60)
ACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATT > SRR4302543.3306343/1‑94 (MQ=60)
ACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATT > SRR4302543.1355020/1‑94 (MQ=60)
CAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTT > SRR4302543.5091191/1‑94 (MQ=60)
AACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTA < SRR4302543.3702968/94‑1 (MQ=60)
ACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAG < SRR4302543.1680760/94‑1 (MQ=60)
ACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAG < SRR4302543.6590692/94‑1 (MQ=60)
ACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAG < SRR4302543.7262521/94‑1 (MQ=60)
CCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGC > SRR4302543.1928681/1‑94 (MQ=60)
CAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCC > SRR4302543.7628311/1‑94 (MQ=60)
CAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCC > SRR4302543.8000014/1‑94 (MQ=60)
CAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCC > SRR4302543.667776/1‑94 (MQ=60)
AGCCGCCAGTCCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCGCCGTCGCCACACCAGCGGCGATTTTTAGCCC < SRR4302543.5006878/94‑1 (MQ=60)
GCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAACCGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCG < SRR4302543.3467343/94‑1 (MQ=60)
GCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCG < SRR4302543.3467342/94‑1 (MQ=60)
CCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGG > SRR4302543.6920169/1‑94 (MQ=60)
CGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGT < SRR4302543.5543475/94‑1 (MQ=60)
GCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTC > SRR4302543.1948224/1‑94 (MQ=60)
GCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTC > SRR4302543.1325136/1‑94 (MQ=60)
CCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCA > SRR4302543.1244905/1‑94 (MQ=60)
CAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCAT < SRR4302543.4371637/94‑1 (MQ=60)
CAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCAT < SRR4302543.5529287/94‑1 (MQ=60)
AATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATC < SRR4302543.6377904/94‑1 (MQ=60)
ATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCG < SRR4302543.2854111/94‑1 (MQ=60)
ATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGAGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCG > SRR4302543.4063339/1‑94 (MQ=60)
TCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCA > SRR4302543.1170439/1‑94 (MQ=60)
CCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCAC < SRR4302543.1839141/94‑1 (MQ=60)
CCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCAC < SRR4302543.288728/94‑1 (MQ=60)
CCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGC > SRR4302543.283865/1‑94 (MQ=60)
CCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGC > SRR4302543.5089269/1‑94 (MQ=60)
CCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGC > SRR4302543.2232047/1‑94 (MQ=60)
CGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCT > SRR4302543.5222261/1‑94 (MQ=60)
GATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTC > SRR4302543.5047485/1‑94 (MQ=60)
GATAATGCCGTCGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCATCCCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTC < SRR4302543.4733973/94‑1 (MQ=60)
ATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCC > SRR4302543.1522379/1‑94 (MQ=60)
AGTGCCGCTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCTATTTTTAGCCCGGTCATCGCACCGCTCGCC < SRR4302543.2598442/94‑1 (MQ=60)
AATGCCGTCGATCAGCGCAATNANTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCC < SRR4302543.2598441/94‑1 (MQ=60)
ATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCGCCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCG > SRR4302543.7917901/1‑94 (MQ=60)
ATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCG > SRR4302543.2013836/1‑94 (MQ=60)
ATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCG > SRR4302543.1366798/1‑94 (MQ=60)
ATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCG > SRR4302543.3812635/1‑94 (MQ=60)
GCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCC > SRR4302543.7512657/1‑94 (MQ=60)
GCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCC < SRR4302543.1290257/94‑1 (MQ=60)
CCGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCG > SRR4302543.6498756/1‑94 (MQ=60)
CGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCGGCCGC > SRR4302543.4219804/1‑94 (MQ=60)
CGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGC > SRR4302543.6894631/1‑94 (MQ=60)
CGTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGC > SRR4302543.4219802/1‑94 (MQ=60)
GTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCT < SRR4302543.7401687/94‑1 (MQ=60)
GTTGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCT < SRR4302543.6679978/94‑1 (MQ=60)
TGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTC < SRR4302543.3310555/94‑1 (MQ=60)
TGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTC > SRR4302543.4751880/1‑94 (MQ=60)
TGATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGGCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTC > SRR4302543.4819010/1‑94 (MQ=60)
GATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCG > SRR4302543.21982/1‑94 (MQ=60)
GATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCG > SRR4302543.1973075/1‑94 (MQ=60)
GATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCG > SRR4302543.1143197/1‑94 (MQ=60)
ATCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGA > SRR4302543.683477/1‑94 (MQ=60)
TCAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGAT < SRR4302543.7240735/94‑1 (MQ=60)
CAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATA > SRR4302543.4531761/1‑94 (MQ=60)
CAGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATA > SRR4302543.3421544/1‑94 (MQ=60)
AGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAA < SRR4302543.2349432/94‑1 (MQ=60)
AGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAA > SRR4302543.5370858/1‑94 (MQ=60)
AGCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAA > SRR4302543.5370857/1‑94 (MQ=60)
GCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAA < SRR4302543.7739353/94‑1 (MQ=60)
GCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAA < SRR4302543.1623807/94‑1 (MQ=60)
GCGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAA < SRR4302543.7739354/94‑1 (MQ=60)
CGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAG > SRR4302543.873313/1‑94 (MQ=60)
CGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAG < SRR4302543.2598038/94‑1 (MQ=60)
CGCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAG < SRR4302543.3615990/94‑1 (MQ=60)
GCAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGC < SRR4302543.7700357/94‑1 (MQ=60)
CAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCT > SRR4302543.2805562/1‑94 (MQ=60)
CAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCT < SRR4302543.7915097/94‑1 (MQ=60)
CAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCT > SRR4302543.1111891/1‑94 (MQ=60)
CAATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCT > SRR4302543.7755492/1‑94 (MQ=60)
AATAATTGCGACAACCGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTT < SRR4302543.7561526/94‑1 (MQ=60)
AATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTT > SRR4302543.1718348/1‑94 (MQ=60)
ATAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTT > SRR4302543.4053346/1‑94 (MQ=60)
TAATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTT < SRR4302543.3664267/94‑1 (MQ=60)
AATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTT < SRR4302543.7646321/94‑1 (MQ=60)
AATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTT < SRR4302543.6103611/94‑1 (MQ=60)
AATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTT < SRR4302543.4084985/94‑1 (MQ=60)
ATTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTG < SRR4302543.4006202/94‑1 (MQ=60)
TTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGG < SRR4302543.1402749/94‑1 (MQ=60)
TTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGG > SRR4302543.5587041/1‑94 (MQ=60)
TTGCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGG < SRR4302543.4703008/94‑1 (MQ=60)
GCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCG < SRR4302543.3137188/94‑1 (MQ=60)
GCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCG < SRR4302543.5994492/94‑1 (MQ=60)
GCGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCG > SRR4302543.5595497/1‑94 (MQ=60)
GCGACAAACGCCATTCCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCG < SRR4302543.7240548/94‑1 (MQ=60)
CGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGG > SRR4302543.4648380/1‑94 (MQ=60)
CGACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGG > SRR4302543.4294862/1‑94 (MQ=60)
GACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGC > SRR4302543.7921250/1‑94 (MQ=60)
GACAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGC < SRR4302543.5133998/94‑1 (MQ=60)
ACAAACGCCATTACCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCG > SRR4302543.7256679/1‑94 (MQ=60)
CAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGT > SRR4302543.4254242/1‑94 (MQ=60)
CAAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGT > SRR4302543.4254241/1‑94 (MQ=60)
AAACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTT < SRR4302543.1548469/94‑1 (MQ=60)
AACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTT < SRR4302543.3092523/94‑1 (MQ=60)
AACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTT < SRR4302543.2196659/94‑1 (MQ=60)
ACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTC < SRR4302543.1537670/94‑1 (MQ=60)
ACGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTC < SRR4302543.2482901/94‑1 (MQ=60)
CGCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCG > SRR4302543.5945109/1‑94 (MQ=60)
CGCCATTGCCACCGTCGCCACACCAGCGGCGATTATTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCG < SRR4302543.3688702/94‑1 (MQ=60)
GCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGCTAAAGCTTTTTGGCGGCGTTTCGC > SRR4302543.5901521/1‑94 (MQ=60)
GCCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGC < SRR4302543.391644/94‑1 (MQ=60)
CCATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCT > SRR4302543.2442012/1‑94 (MQ=60)
CATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTG > SRR4302543.2544544/1‑94 (MQ=60)
CATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTG < SRR4302543.514994/94‑1 (MQ=60)
CATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTG < SRR4302543.3854647/94‑1 (MQ=60)
CATTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTG < SRR4302543.1593791/94‑1 (MQ=60)
TTGCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTGAA < SRR4302543.6311162/94‑1 (MQ=60)
GCCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTGAACG < SRR4302543.4150889/94‑1 (MQ=60)
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ATACTTTCCAGAGAGGCATTGGCGAAACCAAACCAGCCGCCAATTCCGCCGATAATGCCGTTGATCAGCGCAATAATTGCGACAAACGCCATTACCACCGTCGCCACACCAGCGGCGATTTTTAGCCCGGTCATCGCACCGCTCGCCGCCGCTTCGATAAAGCTTTTTGGCGGCGTTTCGCTGAACG > NC_000913/2254466‑2254652
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
