Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,259,919 |
C→T |
R156H (CGC→CAC) |
fruK ← |
fructose‑1‑phosphate kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,259,919 | 0 | C | T | 99.4%
| 551.1
/ NA
| 158 | R156H (CGC→CAC) | fruK | fructose‑1‑phosphate kinase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (81/76); minor base A (1/0); total (82/76) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 164 total aligned reads displayed.
GGTTTCACCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGCGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGCTC > NC_000913/2259829‑2260008
|
ggTTTCACCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGa > 2:119162/1‑93 (MQ=255)
ggTTTCACCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGa > 1:3332333/1‑93 (MQ=255)
ggTTTCACCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGa < 2:361062/93‑1 (MQ=255)
tCACCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCa < 2:444122/93‑1 (MQ=255)
aCCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATc > 2:4538337/1‑93 (MQ=255)
aCCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATc > 2:1673679/1‑93 (MQ=255)
aCCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATc < 1:2672945/93‑1 (MQ=255)
aCCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATc < 1:793065/93‑1 (MQ=255)
gCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGt > 1:2334544/1‑93 (MQ=255)
gCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGt < 1:2879025/93‑1 (MQ=255)
gCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGt < 2:874029/93‑1 (MQ=255)
ccACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTc < 2:4499904/93‑1 (MQ=255)
cACGGAGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGCACACTGACTACGCAGGAGAGTCATCCAGTCg > 1:3439932/1‑93 (MQ=255)
aCGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGATTCATCCAGTCgg > 2:2558193/1‑93 (MQ=255)
aCGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCgg < 1:4612657/93‑1 (MQ=255)
gTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGa > 1:4610402/1‑93 (MQ=255)
tGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGaa < 2:3649444/93‑1 (MQ=255)
tGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGaa > 1:1345357/1‑93 (MQ=255)
gCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAAc < 2:437979/93‑1 (MQ=255)
gCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAAc < 2:1959742/93‑1 (MQ=255)
ccGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACg > 1:3997573/1‑93 (MQ=255)
cGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGc > 1:4133883/1‑93 (MQ=255)
cGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGc > 2:3711863/1‑93 (MQ=255)
gCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCt < 2:3037820/93‑1 (MQ=255)
gCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCt > 2:4362433/1‑93 (MQ=255)
cTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCtt > 1:2027473/1‑93 (MQ=255)
cTTTCAAACCTGCTACTAACGCTTCACCGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATACAGTCGGTGAACGCtt > 1:867715/1‑93 (MQ=255)
tttCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTc < 2:3681947/93‑1 (MQ=255)
tttCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTc > 1:3594361/1‑93 (MQ=255)
ttCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTcc > 2:2822181/1‑93 (MQ=255)
ttCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTcc > 2:969920/1‑93 (MQ=255)
ttCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTcc > 1:2984053/1‑93 (MQ=255)
tCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCg < 2:4006670/93‑1 (MQ=255)
cAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCgg < 1:2334662/93‑1 (MQ=255)
cAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCgg < 2:2254558/93‑1 (MQ=255)
cTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGa > 2:4277431/1‑93 (MQ=255)
cTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGa > 1:2704120/1‑93 (MQ=255)
cTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGa < 2:190775/93‑1 (MQ=255)
cTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGa < 1:2466842/93‑1 (MQ=255)
cTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGa > 2:4418340/1‑93 (MQ=255)
tGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGAc < 2:2480923/93‑1 (MQ=255)
ctaACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTg < 1:1406043/93‑1 (MQ=255)
ctaACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTACGTGAACGCTTCCGGGCTGACGACTg > 2:3792931/1‑93 (MQ=255)
taACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGa < 2:4384121/93‑1 (MQ=255)
taACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCACGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGa < 1:2509674/93‑1 (MQ=255)
aaCGCTTCACGGCTGCTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGAc < 1:2676181/93‑1 (MQ=255)
aaCGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGAc < 2:4642905/93‑1 (MQ=255)
aaCGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGAc < 1:4085602/93‑1 (MQ=255)
cGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACgg < 1:312546/93‑1 (MQ=255)
ttCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTaa > 2:631089/1‑93 (MQ=255)
ttCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTaa > 2:3203493/1‑93 (MQ=255)
ttCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTaa > 2:2255661/1‑93 (MQ=255)
tCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAg > 1:1080517/1‑93 (MQ=255)
aCGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCt > 2:1207993/1‑93 (MQ=255)
cGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCtt > 2:3380436/1‑93 (MQ=255)
ggCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTc < 2:4457315/93‑1 (MQ=255)
gCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTcc < 2:2195087/93‑1 (MQ=255)
tactaTCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGc > 1:818295/1‑93 (MQ=255)
actaTCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCt > 2:866503/1‑93 (MQ=255)
actaTCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCt < 2:1128636/93‑1 (MQ=255)
ctaTCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTg > 2:279248/1‑93 (MQ=255)
ctaTCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTg < 1:3520909/93‑1 (MQ=255)
taTCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGa < 1:1593089/93‑1 (MQ=255)
aTCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGac > 1:241769/1‑93 (MQ=255)
aaaGATAATGCAAGCACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGAcaca < 2:757231/93‑1 (MQ=255)
aaGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAg < 1:2965973/93‑1 (MQ=255)
gATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGAc > 2:1664173/1‑93 (MQ=255)
aTAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGAcc > 1:4429001/1‑93 (MQ=255)
aTAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGAcc > 1:3776990/1‑93 (MQ=255)
tAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCa < 2:3612248/93‑1 (MQ=255)
aTGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCata < 1:2198829/93‑1 (MQ=255)
aTGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCata < 2:203825/93‑1 (MQ=255)
tGCAAGGACCCTGACTACGCAGGTGAGTCATCCAGTCGGCGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCatat > 1:4197974/1‑93 (MQ=255)
tGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCatct < 2:2957268/93‑3 (MQ=255)
tGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCatat > 1:2061010/1‑93 (MQ=255)
tGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCatat > 2:3453011/1‑93 (MQ=255)
gCAAGGACACTGACTACGCAGGTGATTCATCCAGTCGGTAAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACGCAGGCCATATc < 2:2004692/93‑1 (MQ=255)
gCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATc > 2:4156349/1‑93 (MQ=255)
aaGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGa > 2:1080762/1‑93 (MQ=255)
aaGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGa > 2:4561815/1‑93 (MQ=255)
ggACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAAc > 1:3050630/1‑93 (MQ=255)
ggACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAAc > 2:3590393/1‑93 (MQ=255)
ggACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAAc < 2:507898/93‑1 (MQ=255)
ggACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAAc > 1:1259396/1‑93 (MQ=255)
acTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGAc < 1:950630/93‑1 (MQ=255)
acTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGAc > 2:294337/1‑93 (MQ=255)
acTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGAc > 1:4182031/1‑93 (MQ=255)
gACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGa < 2:2980269/93‑1 (MQ=255)
cTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGc < 1:1051403/93‑1 (MQ=255)
cTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGc < 2:1347669/93‑1 (MQ=255)
cTACGCAGGTGAGTCATACAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGc > 2:1961467/1‑93 (MQ=255)
tACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGcc < 2:3933539/93‑1 (MQ=255)
tACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGcc > 2:730275/1‑93 (MQ=255)
aCGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCa < 1:1829796/93‑1 (MQ=255)
aCGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCa > 2:466268/1‑93 (MQ=255)
cGCAGGTGAGTCATCCAGTCGGTGAACGCCTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAg < 2:2358707/93‑1 (MQ=255)
gCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGc < 2:3043451/93‑1 (MQ=255)
gCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGc < 2:2620203/93‑1 (MQ=255)
gCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGc > 1:4080685/1‑93 (MQ=255)
aGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGCTc < 1:1391870/93‑1 (MQ=255)
|
GGTTTCACCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGCGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGCTC > NC_000913/2259829‑2260008
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGGTTTCACCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGCGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGCTCAGAG > NC_000913/2259828‑2260012
|
AGGTTTCACCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGA > SRR4302535.3355524/1‑94 (MQ=60)
ACCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCC < SRR4302535.798638/94‑1 (MQ=60)
ACCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCC < SRR4302535.2692068/94‑1 (MQ=60)
CAGCCACGGTGCCGGTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAG < SRR4302535.1411563/94‑1 (MQ=60)
AGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGT > SRR4302535.2351250/1‑94 (MQ=60)
AGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGT > SRR4302535.1110703/1‑94 (MQ=60)
GCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTC < SRR4302535.2899410/94‑1 (MQ=60)
CCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCG < SRR4302535.2720569/94‑1 (MQ=60)
CCACGGAGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGCACACTGACTACGCAGGAGAGTCATCCAGTCG > SRR4302535.3463852/1‑94 (MQ=60)
ACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGT < SRR4302535.4643995/94‑1 (MQ=60)
GGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGA > SRR4302535.4641726/1‑94 (MQ=60)
GTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAA > SRR4302535.1354963/1‑94 (MQ=60)
GCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACG > SRR4302535.4024925/1‑94 (MQ=60)
GCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACG < SRR4302535.3408236/94‑1 (MQ=60)
CCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGC > SRR4302535.4162182/1‑94 (MQ=60)
CGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCCAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCT > SRR4302535.2134259/1‑94 (MQ=60)
GCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTT > SRR4302535.2042087/1‑94 (MQ=60)
GCTTTCAAACCTGCTACTAACGCTTCACCGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATACAGTCGGTGAACGCTT > SRR4302535.873857/1‑94 (MQ=60)
CTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTC < SRR4302535.2661418/94‑1 (MQ=60)
CTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTC > SRR4302535.3619305/1‑94 (MQ=60)
TTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCC > SRR4302535.3004984/1‑94 (MQ=60)
TTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCC < SRR4302535.3599636/94‑1 (MQ=60)
TTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCC < SRR4302535.4499690/94‑1 (MQ=60)
CAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGG < SRR4302535.2351371/94‑1 (MQ=60)
CCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGA > SRR4302535.2723441/1‑94 (MQ=60)
CTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGAC < SRR4302535.2484624/94‑1 (MQ=60)
CTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGAC > SRR4302535.1378926/1‑94 (MQ=60)
TACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCT < SRR4302535.890550/94‑1 (MQ=60)
CTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGA < SRR4302535.1416091/94‑1 (MQ=60)
TAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCACGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGAC < SRR4302535.2527767/94‑1 (MQ=60)
AACGCTTCACGGCTGCTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACG < SRR4302535.2695328/94‑1 (MQ=60)
AACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACG > SRR4302535.237128/1‑94 (MQ=60)
AACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACG < SRR4302535.4113555/94‑1 (MQ=60)
CGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGT < SRR4302535.314710/94‑1 (MQ=60)
TTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAG > SRR4302535.1088203/1‑94 (MQ=60)
GCTACTATCAAAGATAAGGCAAGGACCCTGACTCCGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGGTGACGCCTGACGGTAAGCTTCCG < SRR4302535.1264201/94‑1 (MQ=60)
CTACTATCAAGGATAATGCAAGGACACTGACTTCGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGC < SRR4302535.1548781/94‑1 (MQ=60)
CTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGC > SRR4302535.824037/1‑94 (MQ=60)
ACTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTG > SRR4302535.869588/1‑94 (MQ=60)
CTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGA < SRR4302535.3000349/94‑1 (MQ=60)
CTATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGA < SRR4302535.3545362/94‑1 (MQ=60)
TATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGAC < SRR4302535.1604586/94‑1 (MQ=60)
TATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGAC > SRR4302535.243427/1‑94 (MQ=60)
ATCAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACA > SRR4302535.4127033/1‑94 (MQ=60)
CAAAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACA > SRR4302535.2524969/1‑94 (MQ=60)
AAGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGA < SRR4302535.2986783/94‑1 (MQ=60)
AGATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGAC > SRR4302535.2852555/1‑94 (MQ=60)
GATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACC > SRR4302535.3803029/1‑94 (MQ=60)
GATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACC > SRR4302535.4459342/1‑94 (MQ=60)
AATAATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACC < SRR4302535.3948378/94‑1 (MQ=60)
ATGCAAGGACCCTGACTACGCAGGTGAGTCATCCAGTCGGCGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATAT > SRR4302535.4226700/1‑94 (MQ=60)
ATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATAT > SRR4302535.2075862/1‑94 (MQ=60)
ATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATAT < SRR4302535.316729/94‑1 (MQ=60)
ATGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATAT < SRR4302535.2214495/94‑1 (MQ=60)
TGCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATC > SRR4302535.620175/1‑94 (MQ=60)
GCAAGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCG < SRR4302535.2267147/94‑1 (MQ=60)
AGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAAC > SRR4302535.3071999/1‑94 (MQ=60)
AGGACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAAC > SRR4302535.1268409/1‑94 (MQ=60)
ACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGA > SRR4302535.4067376/1‑94 (MQ=60)
ACACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCAGCTGACACAGACCATATCGAACTGA > SRR4302535.2002372/1‑94 (MQ=60)
CACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGAC > SRR4302535.4210646/1‑94 (MQ=60)
ACTGACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACC < SRR4302535.957361/94‑1 (MQ=60)
GACTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAG > SRR4302535.4233578/1‑94 (MQ=60)
CTACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCC < SRR4302535.1058881/94‑1 (MQ=60)
ACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAG < SRR4302535.1843007/94‑1 (MQ=60)
ACGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAG > SRR4302535.4177368/1‑94 (MQ=60)
CGCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGC > SRR4302535.4108598/1‑94 (MQ=60)
GCAGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGCT < SRR4302535.3024742/94‑1 (MQ=60)
AGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGCTCA < SRR4302535.1638092/94‑1 (MQ=60)
AGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGCTCA < SRR4302535.1401804/94‑1 (MQ=60)
AGGTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGCTCA > SRR4302535.3131026/1‑94 (MQ=60)
GTGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGCTCAGA > SRR4302535.4216204/1‑94 (MQ=60)
TGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGCTCAGAG < SRR4302535.617390/94‑1 (MQ=60)
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AGGTTTCACCAGCCACGGTGCCGCTTTCAAACCTGCTACTAACGCTTCACGGCTACTATCAAAGATAATGCAAGGACACTGACTACGCAGGCGAGTCATCCAGTCGGTGAACGCTTCCGGGCTGACGCCTGACGGTAAGCTTCCGCTGACACAGACCATATCGAACTGACCGAGCCAGCTCAGAG > NC_000913/2259828‑2260012
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
