Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,265,885 |
A→G |
S13G (AGC→GGC) |
yeiR → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,265,885 | 0 | A | G | 100.0%
| 396.7
/ NA
| 126 | S13G (AGC→GGC) | yeiR | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (41/85); total (41/85) |
Only 100 of 137 total aligned reads displayed.
TTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCAGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAGT > NC_000913/2265795‑2265973
|
ttttttAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCggcggc > 2:2705486/1‑93 (MQ=255)
ttttttAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCggcggc > 2:2623809/1‑93 (MQ=255)
ttttAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTcggcggcgg < 1:73845/93‑1 (MQ=255)
tttAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCggg < 1:837739/93‑1 (MQ=255)
tAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGaa > 1:1049624/1‑93 (MQ=255)
gCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGaaaa < 1:1384788/93‑1 (MQ=255)
gCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGaaaa < 1:4428374/93‑1 (MQ=255)
gCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGaaaa > 2:2590359/1‑93 (MQ=255)
gCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGaaaa < 1:1145498/93‑1 (MQ=255)
ccAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAAc < 1:969519/93‑1 (MQ=255)
cAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAAcc > 1:3094337/1‑93 (MQ=255)
aGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCa < 2:2278987/93‑1 (MQ=255)
ggATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCAc < 2:1981176/93‑1 (MQ=255)
ggATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCAc < 1:4484666/93‑1 (MQ=255)
ggATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCAc > 1:195636/1‑93 (MQ=255)
gttAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGt < 1:4321044/92‑1 (MQ=255)
aTTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGt < 1:2293414/93‑1 (MQ=255)
ttAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTc < 1:3577338/93‑1 (MQ=255)
ttAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTc < 1:4395109/93‑1 (MQ=255)
ttAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCAGTTGTGACCAGGACCACCCTCATCACCGGTTGTCTGGGCGGCGGGAAAACCACGTc < 2:3677909/93‑1 (MQ=255)
aaCGCTCAGTTATCTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTGGGCGGCGGGAAAACCACGTCGa < 2:1309210/93‑1 (MQ=255)
aCGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAt < 1:1577731/93‑1 (MQ=255)
aCGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAt < 2:4230600/93‑1 (MQ=255)
cGCTCAGTTAACTTACCAGAGGATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAtt > 2:4423970/1‑93 (MQ=255)
cTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGATCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAttgt > 2:4394414/1‑91 (MQ=255)
cTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAttct < 1:2485122/93‑1 (MQ=255)
cTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAttct > 1:905620/1‑93 (MQ=255)
cTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGAttct < 2:1514490/93‑1 (MQ=255)
cAGTTAACTTACCAGAGTATTGGGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGAAAAACCACGTCGAttcttc < 1:3241578/93‑1 (MQ=255)
aGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCa < 2:2049969/93‑1 (MQ=255)
aGTTAACTTACCAGAGTATGGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCa < 1:2314612/93‑1 (MQ=255)
gTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCAt > 2:2999138/1‑93 (MQ=255)
gTTAACTTACCAGAGTATTGCGGAGACGTTGTGACCAGGCCCAACCTCATCACCGGTTTTCTCGGCGGCGGGACAACCACGTCGATTCTTCAt > 1:2079118/1‑93 (MQ=255)
ttAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATc > 2:3854710/1‑93 (MQ=255)
ttAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATc < 2:2102799/93‑1 (MQ=255)
aCTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGt < 1:3889541/93‑1 (MQ=255)
aCTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGt > 1:3263193/1‑93 (MQ=255)
aCTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGt > 2:4086182/1‑93 (MQ=255)
ttACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTa < 1:3696873/93‑1 (MQ=255)
ttACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTa > 2:2706675/1‑93 (MQ=255)
ccAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGcc > 2:1151949/1‑93 (MQ=255)
cAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGccc < 1:4267596/93‑1 (MQ=255)
agagTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCa > 2:2226252/1‑93 (MQ=255)
agagTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCa < 2:1926322/93‑1 (MQ=255)
agagTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCa < 2:1822539/93‑1 (MQ=255)
gagTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCAt < 1:623597/93‑1 (MQ=255)
gagTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCAt < 2:174253/93‑1 (MQ=255)
gagTATGGCGGAGCCGTTGTGACCAGGCCCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCAt < 2:495194/93‑1 (MQ=255)
agTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATa < 2:1226952/93‑1 (MQ=255)
agTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATa < 1:2454625/93‑1 (MQ=255)
gTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATaa < 2:4310598/93‑1 (MQ=255)
tATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATaaa < 1:553035/93‑1 (MQ=255)
tATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATaaa > 2:2400831/1‑93 (MQ=255)
aTTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAg > 1:4506947/1‑93 (MQ=255)
ttGCGTAGCCGTGGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGa < 2:4156289/93‑1 (MQ=255)
ttGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGa < 2:1481283/93‑1 (MQ=255)
ttGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGa < 1:1582217/93‑1 (MQ=255)
ttGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGa < 2:2511610/93‑1 (MQ=255)
tGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGAt < 1:1439342/93‑1 (MQ=255)
ggggAGCTGTGGTGCCCAGGACCACCCTCATCACCGTTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATc < 1:3994463/91‑1 (MQ=255)
gCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATc > 2:2939012/1‑93 (MQ=255)
aGCCGTTGTGACCAGGCCCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCaa < 1:922645/93‑1 (MQ=255)
aGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCaa < 2:2796258/93‑1 (MQ=255)
aGCCGTCGTGACCACGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCaa < 1:1866560/93‑1 (MQ=255)
gCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAAc < 2:4620483/93‑1 (MQ=255)
gCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAAc < 1:2806897/93‑1 (MQ=255)
gCCGTGGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAAc < 2:895795/93‑1 (MQ=255)
ccGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACg < 2:3603431/93‑1 (MQ=255)
cGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGa < 2:2684910/93‑1 (MQ=255)
gTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGaa < 1:362544/93‑1 (MQ=255)
gTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGaa > 2:895667/1‑93 (MQ=255)
ttGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGaaa > 2:507052/1‑93 (MQ=255)
tgACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAAt < 2:2141958/93‑1 (MQ=255)
gACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATg < 1:3363960/93‑1 (MQ=255)
gACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATg < 2:2180936/93‑1 (MQ=255)
gACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATg < 1:625275/93‑1 (MQ=255)
gACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATg < 1:568993/93‑1 (MQ=255)
gACCAGGACAAACCTCATCACCGGTTTTCTCGGCGGCTGGAAAATCCCGTCGGTTCTTCCTCTGTTAGTCCATAAAGATCCCAACGAAAAATg > 2:633286/1‑93 (MQ=255)
gccAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATgg < 2:4390780/92‑1 (MQ=255)
ccAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATggg > 1:83578/1‑93 (MQ=255)
cAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGc < 2:3302335/93‑1 (MQ=255)
aGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCg > 1:3824935/1‑93 (MQ=255)
ggACCACCCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCgg < 2:971945/93‑1 (MQ=255)
ccTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGt < 2:315204/93‑1 (MQ=255)
ccTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGt < 2:2367918/93‑1 (MQ=255)
catcaCCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTaa < 1:2059037/93‑1 (MQ=255)
atcaCCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAAt < 1:1498868/93‑1 (MQ=255)
ccccGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGa < 1:4215810/91‑1 (MQ=255)
aCCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCCTAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGat > 1:113335/1‑92 (MQ=255)
aCCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGaa > 2:40369/1‑93 (MQ=255)
ccGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAAt < 2:4482617/93‑1 (MQ=255)
cGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAAtt < 2:90778/93‑1 (MQ=255)
gTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTg > 2:1603076/1‑93 (MQ=255)
ttttCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTgg < 1:558861/93‑1 (MQ=255)
ttttCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTgg < 1:2198968/93‑1 (MQ=255)
tttCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTggg < 2:954194/93‑1 (MQ=255)
ttCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTgggg > 1:1235158/1‑93 (MQ=255)
tctcGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGa > 2:4432973/1‑93 (MQ=255)
tcGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAg < 2:57230/93‑1 (MQ=255)
tcGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAg < 2:3924803/93‑1 (MQ=255)
|
TTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCAGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAGT > NC_000913/2265795‑2265973
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCAGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAGTCGG > NC_000913/2265795‑2265976
|
TTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCG < SRR4302535.249216/94‑1 (MQ=60)
TTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGG < SRR4302535.74383/94‑1 (MQ=60)
TTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGA < SRR4302535.843620/94‑1 (MQ=60)
TTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAA > SRR4302535.1057089/1‑94 (MQ=60)
GCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAAC < SRR4302535.1394672/94‑1 (MQ=60)
GCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAAC < SRR4302535.1153660/94‑1 (MQ=60)
GCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAAC < SRR4302535.4458710/94‑1 (MQ=60)
CCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACC > SRR4302535.3693074/1‑94 (MQ=60)
CCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACC > SRR4302535.3115885/1‑94 (MQ=60)
CCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACC < SRR4302535.976404/94‑1 (MQ=60)
AGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCAC > SRR4302535.196982/1‑94 (MQ=60)
GGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACG < SRR4302535.4515453/94‑1 (MQ=60)
GGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACG < SRR4302535.1496694/94‑1 (MQ=60)
GTTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTC < SRR4302535.4350602/94‑1 (MQ=60)
ATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTC < SRR4302535.2309820/94‑1 (MQ=60)
TTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCG < SRR4302535.4425185/94‑1 (MQ=60)
TTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCG < SRR4302535.3602137/94‑1 (MQ=60)
TTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCG > SRR4302535.3290995/1‑94 (MQ=60)
ACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATT < SRR4302535.1589116/94‑1 (MQ=60)
CGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTC > SRR4302535.96109/1‑94 (MQ=60)
GCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCT > SRR4302535.912047/1‑94 (MQ=60)
CTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTT < SRR4302535.2503038/94‑1 (MQ=60)
TCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTC > SRR4302535.1198875/1‑94 (MQ=60)
CAGTTAACTTACCAGAGTATTGGGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGAAAAACCACGTCGATTCTTCA < SRR4302535.3264092/94‑1 (MQ=60)
CAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCA > SRR4302535.2010903/1‑94 (MQ=60)
AGTTAACTTACCAGAGTATTGCGGAGACGTTGTGACCAGGCCCAACCTCATCACCGGTTTTCTCGGCGGCGGGACAACCACGTCGATTCTTCAT > SRR4302535.2094094/1‑94 (MQ=60)
AGTTAACTTACCAGAGTATGGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCAT < SRR4302535.2331173/94‑1 (MQ=60)
AACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGT > SRR4302535.3285858/1‑94 (MQ=60)
ACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTT < SRR4302535.3916210/94‑1 (MQ=60)
TTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAG < SRR4302535.3722456/94‑1 (MQ=60)
CAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCA < SRR4302535.4296816/94‑1 (MQ=60)
GAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATA < SRR4302535.627929/94‑1 (MQ=60)
AGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAA < SRR4302535.2472320/94‑1 (MQ=60)
TATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAG < SRR4302535.556906/94‑1 (MQ=60)
TATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAG > SRR4302535.4537881/1‑94 (MQ=60)
ATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGA > SRR4302535.1684727/1‑94 (MQ=60)
TTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGAT < SRR4302535.1593637/94‑1 (MQ=60)
TGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATC < SRR4302535.1449630/94‑1 (MQ=60)
ggggagctgtggtgcCCAGGACCACCCTCATCACCGTTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCC < SRR4302535.4021789/79‑1 (MQ=60)
CGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCC > SRR4302535.42588/1‑94 (MQ=60)
AGCCGTTGTGACCAGGCCCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAAC < SRR4302535.929184/94‑1 (MQ=60)
AGCCGTCGTGACCACGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAAC < SRR4302535.1880011/94‑1 (MQ=60)
GCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACG < SRR4302535.2826851/94‑1 (MQ=60)
GTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAA < SRR4302535.365045/94‑1 (MQ=60)
GTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAAT > SRR4302535.4609581/1‑94 (MQ=60)
GACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGG < SRR4302535.3387368/94‑1 (MQ=60)
GACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGG < SRR4302535.2289853/94‑1 (MQ=60)
GACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGG < SRR4302535.572989/94‑1 (MQ=60)
GACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGG < SRR4302535.629624/94‑1 (MQ=60)
ACCAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGG > SRR4302535.84167/1‑94 (MQ=60)
CAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCG < SRR4302535.3927642/94‑1 (MQ=60)
CAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCG > SRR4302535.3851319/1‑94 (MQ=60)
CAGGACCAACCTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCG < SRR4302535.4438497/94‑1 (MQ=60)
CTCATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTA > SRR4302535.896682/1‑94 (MQ=60)
CATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAAT < SRR4302535.2073873/94‑1 (MQ=60)
ATCACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATG < SRR4302535.1509651/94‑1 (MQ=60)
CCCCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAA < SRR4302535.4244661/94‑1 (MQ=60)
CACCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCCTAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAT > SRR4302535.114128/1‑94 (MQ=60)
CCGGTTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATT < SRR4302535.2908860/94‑1 (MQ=60)
TTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGG < SRR4302535.68573/94‑1 (MQ=60)
TTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGG < SRR4302535.562767/94‑1 (MQ=60)
TTTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGG < SRR4302535.2214637/94‑1 (MQ=60)
TTTCTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGG > SRR4302535.1243983/1‑94 (MQ=60)
CTCGGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAG < SRR4302535.567862/94‑1 (MQ=60)
GGCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAGTCG > SRR4302535.2996750/1‑94 (MQ=60)
GCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAGTCGG > SRR4302535.635091/1‑94 (MQ=60)
GCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAGTCGG < SRR4302535.3644669/94‑1 (MQ=60)
GCGGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAGTCGG < SRR4302535.2487691/94‑1 (MQ=60)
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TTTTTTAGCCAGGATTAACGCTCAGTTAACTTACCAGAGTATTGCGGAGCCGTTGTGACCAGGACCAACCTCATCACCGGTTTTCTCGGCAGCGGGAAAACCACGTCGATTCTTCATCTGTTAGCCCATAAAGATCCCAACGAAAAATGGGCGGTACTGGTTAATGAATTTGGGGAAGTCGG > NC_000913/2265795‑2265976
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
