Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,284,989 |
(C)5→4 |
coding (1932/2511 nt) |
yejO ← |
putative ATP‑binding component of a transport system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,284,985 | 0 | C | . | 100.0%
| 478.4
/ NA
| 105 | coding (1936/2511 nt) | yejO | putative ATP‑binding component of a transport system |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (51/54); total (51/54) |
Only 100 of 117 total aligned reads displayed.
ACTCATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGCCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATT > NC_000913/2284893‑2285073
|
aCTCATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGc > 1:4162787/1‑93 (MQ=255)
tCATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccc > 1:3707434/1‑93 (MQ=255)
ccATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccc < 2:2986798/92‑1 (MQ=255)
cATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTGTGATGCTCCCAACCGGCATAAGcccc > 1:2079972/1‑93 (MQ=255)
aTCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGcccca > 1:3546991/1‑92 (MQ=255)
tCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccag < 1:887537/93‑3 (MQ=255)
tCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccag < 1:2547336/93‑3 (MQ=255)
ttGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccaggg < 2:2100455/93‑5 (MQ=255)
ttGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGccccaggg > 1:198978/1‑89 (MQ=255)
tGCCATGGATGGTTTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGt < 2:1346777/93‑1 (MQ=255)
tGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGt > 1:4617016/1‑93 (MQ=255)
tccATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGta < 1:468195/92‑1 (MQ=255)
gCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGta < 2:4288724/93‑1 (MQ=255)
ccATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGtat > 1:2490526/1‑93 (MQ=255)
cATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGtata < 2:215630/93‑1 (MQ=255)
cATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGtata < 1:342311/93‑1 (MQ=255)
atggatggTGTTGGCAAAACGTTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAg > 1:1083941/1‑93 (MQ=255)
atggatggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAg < 2:332788/93‑1 (MQ=255)
atggatggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAg > 2:2063018/1‑93 (MQ=255)
tggatggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGc > 1:4186377/1‑93 (MQ=255)
tggatggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGc < 1:2867029/93‑1 (MQ=255)
tagatggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGc > 2:2703791/3‑93 (MQ=255)
gatggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTa < 1:4112618/93‑1 (MQ=255)
atggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTAt < 2:2431572/93‑1 (MQ=255)
atggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTAt < 1:2213995/93‑1 (MQ=255)
ggTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCg > 1:1765894/1‑93 (MQ=255)
gtTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGata < 1:1067961/93‑1 (MQ=255)
ttGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGatat > 1:3592684/1‑93 (MQ=255)
tGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATAtt > 2:1503289/1‑93 (MQ=255)
tGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATAtt < 2:1202424/93‑1 (MQ=255)
ggCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTa > 1:3450323/1‑93 (MQ=255)
ggCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTa < 1:2272525/93‑1 (MQ=255)
aaaaCGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCt > 1:2730266/1‑93 (MQ=255)
aaaCGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCtt < 1:826648/93‑1 (MQ=255)
aaaCGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCtt < 2:4112601/93‑1 (MQ=255)
aaCGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCttt < 2:3747089/93‑1 (MQ=255)
aCGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTg > 1:1133761/1‑93 (MQ=255)
aCGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTg > 1:213901/1‑93 (MQ=255)
aCGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTg > 2:1919761/1‑93 (MQ=255)
aCGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTg < 1:3895201/93‑1 (MQ=255)
gTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTgccg > 1:2692615/1‑93 (MQ=255)
gTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGCATAGCTATCGATATTACCTTTgccg > 1:1547042/1‑93 (MQ=255)
tCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTgccgc > 2:4251246/1‑93 (MQ=255)
tCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTgccgc < 1:3904319/93‑1 (MQ=255)
aaCTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGccgccg > 2:4047505/1‑93 (MQ=255)
cTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATAATACCTTTGCCGCcgcg > 2:4173769/1‑93 (MQ=255)
tttCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGa < 1:3809412/93‑1 (MQ=255)
ttCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGAt > 1:2640215/1‑93 (MQ=255)
caccCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCaaaa < 2:3861807/93‑1 (MQ=255)
caccCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCaaaa < 1:4468389/93‑1 (MQ=255)
accCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAAc < 2:3520435/93‑1 (MQ=255)
accCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAAc < 1:2641213/93‑1 (MQ=255)
ccccATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAAcc < 2:479494/93‑1 (MQ=255)
cccATGAACATAGGCACCGTTCTGATGCTCCTAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCa > 2:487903/1‑93 (MQ=255)
ccATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCaa < 2:1930654/93‑1 (MQ=255)
cATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAat < 1:123239/93‑1 (MQ=255)
cATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAat < 1:1679278/93‑1 (MQ=255)
aTCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAata > 2:149573/1‑93 (MQ=255)
tCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAatat > 1:1790109/1‑93 (MQ=255)
cAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATc > 1:2029199/1‑93 (MQ=255)
aaCATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGAATAGCTATCGATATTACCTTTGCGGCCGCGATCAAAACCAATATCa > 2:1047881/1‑93 (MQ=255)
aCATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAg < 1:1870331/93‑1 (MQ=255)
cATAGGCACCGTTCTGAGGCTCCCAAAGGGCATAAGGCCCC‑GGGTAGAGCTATCGTTATTACCGGTGCCGACGCGGCAAAAAGCAATAGCAGa > 2:3904048/1‑93 (MQ=255)
aTAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGaa < 1:149412/93‑1 (MQ=255)
tAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAAt > 2:1813568/1‑93 (MQ=255)
tAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAAt > 2:4057785/1‑93 (MQ=255)
aGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATg > 1:3333662/1‑93 (MQ=255)
gCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATgag < 2:3455256/93‑1 (MQ=255)
cACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATgaga < 1:3925981/93‑1 (MQ=255)
aCCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGagag < 1:3318269/93‑1 (MQ=255)
aCCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGagag < 2:1072307/93‑1 (MQ=255)
ccGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGagaga > 1:1055922/1‑92 (MQ=255)
gTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTaa < 1:1075235/93‑1 (MQ=255)
gTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTaa < 1:599047/93‑1 (MQ=255)
ttCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAAc < 1:1578054/93‑1 (MQ=255)
ttCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAAc < 1:3350538/93‑1 (MQ=255)
ttCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAAc > 1:2314836/1‑93 (MQ=255)
gATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCaaa > 1:739294/1‑93 (MQ=255)
aTGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAg > 1:4238732/1‑93 (MQ=255)
gCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGAt > 2:387264/1‑93 (MQ=255)
gCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGAt < 1:3642504/93‑1 (MQ=255)
cTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATc < 2:4040976/93‑1 (MQ=255)
tCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCa > 2:3702362/1‑93 (MQ=255)
tCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCa > 2:3034995/1‑93 (MQ=255)
tCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCa > 1:1664802/1‑93 (MQ=255)
tCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCa > 1:1877777/1‑93 (MQ=255)
ccAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAg > 2:4050141/1‑93 (MQ=255)
ccAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAg > 2:3353589/1‑93 (MQ=255)
ccAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAg > 1:1470907/1‑93 (MQ=255)
cAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGc < 2:3391888/93‑1 (MQ=255)
cAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGc > 2:3385558/1‑93 (MQ=255)
cAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGc > 2:3329108/1‑93 (MQ=255)
ccGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCcgc > 2:2053109/1‑93 (MQ=255)
cGGCATAAG‑CCCCAGGGTACAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCcgcg > 2:4584657/1‑93 (MQ=255)
gCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGaa < 2:149088/93‑1 (MQ=255)
gCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGaa < 1:1957420/93‑1 (MQ=255)
gCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGaa < 1:2913092/93‑1 (MQ=255)
gCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGaa > 1:3160434/1‑93 (MQ=255)
aTAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAAtt > 2:2981828/1‑93 (MQ=255)
aTAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCACGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAAtt > 2:2926928/1‑93 (MQ=255)
|
ACTCATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGCCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATT > NC_000913/2284893‑2285073
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGCCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGCTT > NC_000913/2284896‑2285082
|
CATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGCCCCA > SRR4302535.3571617/1‑94 (MQ=60)
TCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGG < SRR4302535.2565666/94‑1 (MQ=60)
TCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGG < SRR4302535.893821/94‑1 (MQ=60)
CTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGG > SRR4302535.200342/1‑94 (MQ=60)
TTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGT > SRR4302535.4648392/1‑94 (MQ=60)
TCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTAT < SRR4302535.471469/94‑1 (MQ=60)
GCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTAT > SRR4302535.2508489/1‑94 (MQ=60)
CATGGATGGTGTTGGCAAAACGTTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAG > SRR4302535.1091650/1‑94 (MQ=60)
CATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAG < SRR4302535.344683/94‑1 (MQ=60)
CATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAG < SRR4302535.3762846/94‑1 (MQ=60)
ATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGC > SRR4302535.4215029/1‑94 (MQ=60)
TGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCT < SRR4302535.2887338/94‑1 (MQ=60)
GATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTAT < SRR4302535.4140769/94‑1 (MQ=60)
ATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATC < SRR4302535.2229762/94‑1 (MQ=60)
TGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCG > SRR4302535.1778697/1‑94 (MQ=60)
GTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATAT > SRR4302535.3617601/1‑94 (MQ=60)
GTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATAT < SRR4302535.1075556/94‑1 (MQ=60)
GTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATAT < SRR4302535.1305638/94‑1 (MQ=60)
TGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTA > SRR4302535.3474307/1‑94 (MQ=60)
GGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTAC < SRR4302535.2288737/94‑1 (MQ=60)
CAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCT > SRR4302535.2749756/1‑94 (MQ=60)
AAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTT < SRR4302535.832435/94‑1 (MQ=60)
AACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTG > SRR4302535.1141852/1‑94 (MQ=60)
AACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTG > SRR4302535.215367/1‑94 (MQ=60)
ACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGC < SRR4302535.3921897/94‑1 (MQ=60)
GGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCG > SRR4302535.2711862/1‑94 (MQ=60)
GGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCG > SRR4302535.2419899/1‑94 (MQ=60)
GGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCG > SRR4302535.3424655/1‑94 (MQ=60)
GGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGCATAGCTATCGATATTACCTTTGCCG > SRR4302535.1558185/1‑94 (MQ=60)
TCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCC < SRR4302535.3931062/94‑1 (MQ=60)
TTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGAT < SRR4302535.3835694/94‑1 (MQ=60)
TTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGAT > SRR4302535.2659128/1‑94 (MQ=60)
TCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCA < SRR4302535.1691626/94‑1 (MQ=60)
CACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAAC < SRR4302535.4499049/94‑1 (MQ=60)
ACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACC < SRR4302535.2660132/94‑1 (MQ=60)
CATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATA < SRR4302535.124106/94‑1 (MQ=60)
CATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATA < SRR4302535.1691439/94‑1 (MQ=60)
CAACAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATA < SRR4302535.3511453/94‑1 (MQ=60)
ATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATAT > SRR4302535.1803057/1‑94 (MQ=60)
TCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATC > SRR4302535.2043826/1‑94 (MQ=60)
ACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGA < SRR4302535.1883813/94‑1 (MQ=60)
ATAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAAT < SRR4302535.150451/94‑1 (MQ=60)
TAGGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATG > SRR4302535.3356883/1‑94 (MQ=60)
GGCACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAG < SRR4302535.2799239/94‑1 (MQ=60)
CACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAG < SRR4302535.3952805/94‑1 (MQ=60)
ACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGT < SRR4302535.3341356/94‑1 (MQ=60)
ACCGTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGA > SRR4302535.1063431/1‑94 (MQ=60)
GTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAAC < SRR4302535.603235/94‑1 (MQ=60)
GTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAAC < SRR4302535.1082877/94‑1 (MQ=60)
GTTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAAC > SRR4302535.2331399/1‑94 (MQ=60)
TTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACC < SRR4302535.3373879/94‑1 (MQ=60)
TTCTGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACC < SRR4302535.1589442/94‑1 (MQ=60)
TCTGATGCTCCCAACCGGCATAAG‑CCCCAAGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCA < SRR4302535.513166/94‑1 (MQ=60)
TGATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAA > SRR4302535.744491/1‑94 (MQ=60)
GATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAG > SRR4302535.4267750/1‑94 (MQ=60)
ATGCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGA < SRR4302535.2040357/94‑1 (MQ=60)
GCTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATC < SRR4302535.3667730/94‑1 (MQ=60)
CTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCA > SRR4302535.1891304/1‑94 (MQ=60)
CTCCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCA > SRR4302535.1676834/1‑94 (MQ=60)
CCCAACCGGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAG > SRR4302535.1481440/1‑94 (MQ=60)
GGCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAA > SRR4302535.3182360/1‑94 (MQ=60)
GCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAAT < SRR4302535.1971510/94‑1 (MQ=60)
GCATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAAT < SRR4302535.2933671/94‑1 (MQ=60)
ATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTG > SRR4302535.4229262/1‑94 (MQ=60)
ATAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTG > SRR4302535.1300851/1‑94 (MQ=60)
aaaagCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTG > SRR4302535.4453908/6‑94 (MQ=60)
TAAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGT < SRR4302535.2860901/94‑1 (MQ=60)
AAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTA < SRR4302535.1217161/94‑1 (MQ=60)
AAG‑CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTA > SRR4302535.990867/1‑94 (MQ=60)
agCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTAC > SRR4302535.551423/3‑94 (MQ=60)
agCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTAC < SRR4302535.964900/92‑1 (MQ=60)
GCCCCAGGGTATAGTTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAAGGAGAGTAACCAAAGATCAAGCCGCGAATTGTACT < SRR4302535.4458126/94‑1 (MQ=60)
GCCCCAAGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACT < SRR4302535.71519/94‑1 (MQ=60)
CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTG > SRR4302535.3681579/1‑94 (MQ=60)
CCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTG > SRR4302535.3285340/1‑94 (MQ=60)
CCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGT > SRR4302535.4685184/1‑94 (MQ=60)
CCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGT > SRR4302535.1573066/1‑94 (MQ=60)
CCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGCT < SRR4302535.2782652/94‑1 (MQ=60)
CAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATGAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGCTT > SRR4302535.2705552/1‑94 (MQ=60)
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CATCTTGCCATGGATGGTGTTGGCAAAACGGTCAACTTTCACCACCCCATCAACATAGGCACCGTTCTGATGCTCCCAACCGGCATAAGCCCCCAGGGTATAGCTATCGATATTACCTTTGCCGCCGCGATCAAAACCAATATCAGAATGAGAGTAACCAAAGATCAAGCCGCGAATTGTACTGCTT > NC_000913/2284896‑2285082
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
