Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,289,578	G→A	L285L (CTG→TTG)	ccmH ←	CcmH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,289,578	0	G	A	100.0%	599.1 / NA	168	L285L (CTG→TTG)	ccmH	CcmH
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (95/73); total (95/73)

Only 100 of 172 total aligned reads displayed.

CGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTG  >  NC_000913/2289488‑2289666

cgGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACt                                                                                        >  2:1360906/1‑93 (MQ=255)

cgGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACt                                                                                        <  2:2260821/93‑1 (MQ=255)

 ggCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTg                                                                                       <  1:703334/93‑1 (MQ=255)

 ggCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCCATGGTCCGTTCTCACCAACTg                                                                                       >  1:3256027/1‑93 (MQ=255)

   cAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGAc                                                                                     <  2:3102874/93‑1 (MQ=255)

    aaCGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACg                                                                                    >  2:3012424/1‑93 (MQ=255)

     aCGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGt                                                                                   >  1:4497953/1‑93 (MQ=255)

     aCGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGt                                                                                   >  1:1739908/1‑93 (MQ=255)

        gCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGc                                                                                >  2:2912501/1‑93 (MQ=255)

        gCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGc                                                                                <  2:736652/93‑1 (MQ=255)

        gCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGc                                                                                <  1:3081591/93‑1 (MQ=255)

         cTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCGTACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGct                                                                               >  2:1585135/1‑92 (MQ=255)

          ttCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAg                                                                              <  1:910549/93‑1 (MQ=255)

           tCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGt                                                                             <  2:3089948/93‑1 (MQ=255)

           tCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGt                                                                             >  2:1919244/1‑93 (MQ=255)

              ccAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCa                                                                          >  2:3419800/1‑93 (MQ=255)

               cAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAc                                                                         <  2:43757/93‑1 (MQ=255)

                 aaTCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAccg                                                                       >  1:2805336/1‑93 (MQ=255)

                   tCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTTGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAccgcc                                                                     >  2:2545392/1‑93 (MQ=255)

                     gctgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGa                                                                   <  1:2206143/93‑1 (MQ=255)

                       tgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAgg                                                                 <  1:2873550/93‑1 (MQ=255)

                       tgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAgg                                                                 >  1:2567190/1‑93 (MQ=255)

                       tgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAgg                                                                 <  2:245426/93‑1 (MQ=255)

                        gctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGc                                                                >  1:53754/1‑93 (MQ=255)

                        gctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGc                                                                <  1:3592758/93‑1 (MQ=255)

                          tgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCgg                                                              >  2:4650004/1‑93 (MQ=255)

                          tgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCgg                                                              <  2:4332246/93‑1 (MQ=255)

                           gctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGt                                                             <  2:1246875/93‑1 (MQ=255)

                             tCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTg                                                           >  2:3888801/1‑93 (MQ=255)

                             tCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTg                                                           >  1:1314202/1‑93 (MQ=255)

                               aaaGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTc                                                         >  1:2808431/1‑93 (MQ=255)

                                aaGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCg                                                        >  1:3171814/1‑93 (MQ=255)

                                 aGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGt                                                       >  1:1510705/1‑93 (MQ=255)

                                  ggCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGtt                                                      >  1:1074236/1‑93 (MQ=255)

                                  ggCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGtt                                                      >  2:4178543/1‑93 (MQ=255)

                                     aTTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTggg                                                   >  1:1644610/1‑93 (MQ=255)

                                     aTTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTggg                                                   <  2:173452/93‑1 (MQ=255)

                                     aTTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTggg                                                   <  1:3147937/93‑1 (MQ=255)

                                      ttAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGa                                                  <  2:1888668/93‑1 (MQ=255)

                                       tAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGAt                                                 <  1:742420/93‑1 (MQ=255)

                                        aaaCGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATc                                                <  1:2971033/93‑1 (MQ=255)

                                         aaCGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCa                                               <  1:3498378/93‑1 (MQ=255)

                                         aaCGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCa                                               >  1:571030/1‑93 (MQ=255)

                                          aCGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAg                                              <  2:1534541/93‑1 (MQ=255)

                                           cGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGa                                             >  2:2676188/1‑93 (MQ=255)

                                            gCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAt                                            <  2:39630/93‑1 (MQ=255)

                                             cATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATg                                           >  1:2975196/1‑93 (MQ=255)

                                             cATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATg                                           >  1:1752411/1‑93 (MQ=255)

                                             cATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATg                                           >  1:726724/1‑93 (MQ=255)

                                              aTACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGa                                          >  2:2064773/1‑93 (MQ=255)

                                               tACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGaa                                         <  1:2987497/93‑1 (MQ=255)

                                               tACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGaa                                         <  2:1772022/93‑1 (MQ=255)

                                               tACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGaa                                         >  1:1330764/1‑93 (MQ=255)

                                               tACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGaa                                         >  1:2535996/1‑93 (MQ=255)

                                                aCATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAAc                                        <  2:2331462/93‑1 (MQ=255)

                                                aCATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAAc                                        <  1:4245651/93‑1 (MQ=255)

                                                aCATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAAc                                        >  2:2399240/1‑93 (MQ=255)

                                                aCATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAAc                                        <  1:344677/93‑1 (MQ=255)

                                                 cATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACg                                       >  1:1801800/1‑93 (MQ=255)

                                                   tGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAg                                     >  2:4132207/1‑93 (MQ=255)

                                                   tGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAg                                     >  1:1704918/1‑93 (MQ=255)

                                                     cTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTc                                   <  1:4327351/93‑1 (MQ=255)

                                                     cTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTc                                   <  2:3873733/93‑1 (MQ=255)

                                                      ttAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCa                                  >  2:1432378/1‑93 (MQ=255)

                                                      ttAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCa                                  >  1:417576/1‑93 (MQ=255)

                                                      ttAGCACACGGATATTGCTATGGTCCGGTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCa                                  <  2:4048929/93‑1 (MQ=255)

                                                       tAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCaa                                 <  1:3974113/93‑1 (MQ=255)

                                                          cacaCGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGc                              <  2:4613016/93‑1 (MQ=255)

                                                          cacaCGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGc                              <  2:1413641/93‑1 (MQ=255)

                                                           acacGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCt                             >  2:736563/1‑93 (MQ=255)

                                                           acacGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCt                             >  1:4676496/1‑93 (MQ=255)

                                                            cacGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCtt                            >  2:858455/1‑93 (MQ=255)

                                                            cacGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCtt                            >  1:1151321/1‑93 (MQ=255)

                                                              cGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCa                          <  1:537651/93‑1 (MQ=255)

                                                               ggATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAg                         <  2:2057948/93‑1 (MQ=255)

                                                                gATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGc                        >  2:1098825/1‑93 (MQ=255)

                                                                 atatTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCg                       <  2:207854/93‑1 (MQ=255)

                                                                 atatTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCg                       <  2:1975432/93‑1 (MQ=255)

                                                                  tatTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGt                      >  1:1331947/1‑93 (MQ=255)

                                                                  tatTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGt                      >  2:825263/1‑93 (MQ=255)

                                                                   atTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTa                     <  2:3790361/93‑1 (MQ=255)

                                                                   atTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTa                     >  2:1398828/1‑93 (MQ=255)

                                                                     tGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATc                   >  2:636056/1‑93 (MQ=255)

                                                                      gCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATcc                  <  2:3410264/93‑1 (MQ=255)

                                                                       cTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATccc                 <  1:459101/93‑1 (MQ=255)

                                                                       cTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATccc                 <  1:459099/93‑1 (MQ=255)

                                                                        tATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCACCGCTTCAGCGTATCCCa                >  2:4360006/1‑93 (MQ=255)

                                                                         aTGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGGCAACGCTTCAGCGTATCCCAg               >  1:4129968/1‑93 (MQ=255)

                                                                         aTGGTCCGTGCTCACCAACTGACGTAGCAGTTCGCCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAg               <  1:3716547/93‑1 (MQ=255)

                                                                          tGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGt              <  1:2900340/93‑1 (MQ=255)

                                                                          tGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTAGGATCAGAAGAACGAGTCAACGCTTCCGCGTATCCCAga              >  2:56207/1‑92 (MQ=255)

                                                                            gTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTgc            >  1:2766770/1‑93 (MQ=255)

                                                                             tCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTgca           <  2:2163273/93‑1 (MQ=255)

                                                                              ccGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTgcag          >  2:4254440/1‑93 (MQ=255)

                                                                                gctctcCCCAACTGACGTAGCAGTCAACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTgcagca        <  1:1852116/91‑1 (MQ=255)

                                                                                 ttCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAt       >  2:1030169/1‑93 (MQ=255)

                                                                                  tctcACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATc      >  1:872857/1‑93 (MQ=255)

                                                                                   ctcACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCa     >  1:4011081/1‑93 (MQ=255)

                                                                                    tcACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCAc    >  1:2028534/1‑93 (MQ=255)

                                                                                      aCCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTg  <  2:4521730/93‑1 (MQ=255)

CGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTG  >  NC_000913/2289488‑2289666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTT  >  NC_000913/2289486‑2289670

CGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAAC                                                                                             >  SRR4302535.2602474/1‑94 (MQ=60)

CGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAAC                                                                                             <  SRR4302535.2746913/94‑1 (MQ=60)

  CGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCCATGGTCCGTTCTCACCAACTG                                                                                           >  SRR4302535.3278650/1‑94 (MQ=60)

   GGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGA                                                                                          <  SRR4302535.708266/94‑1 (MQ=60)

      AACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGT                                                                                       >  SRR4302535.4528834/1‑94 (MQ=60)

      AACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGT                                                                                       >  SRR4302535.1598001/1‑94 (MQ=60)

      AACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGT                                                                                       >  SRR4302535.1752481/1‑94 (MQ=60)

         GGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGACATTGCTATGGTCCGTTCTCACCAACTGACGTAGC                                                                                    >  SRR4302535.397353/1‑94 (MQ=60)

          GCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCA                                                                                   <  SRR4302535.3103070/94‑1 (MQ=60)

            TTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGT                                                                                 <  SRR4302535.917023/94‑1 (MQ=60)

                CCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAC                                                                             >  SRR4302535.528995/1‑94 (MQ=60)

                CCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAC                                                                             >  SRR4302535.570014/1‑94 (MQ=60)

                 CAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACC                                                                            >  SRR4302535.1936880/1‑94 (MQ=60)

                  AAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCG                                                                           >  SRR4302535.2825282/1‑94 (MQ=60)

                    ATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCC                                                                         >  SRR4302535.4309167/1‑94 (MQ=60)

                    ATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCC                                                                         >  SRR4302535.2114120/1‑94 (MQ=60)

                       GCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCGCACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAG                                                                      >  SRR4302535.1766837/1‑94 (MQ=60)

                       GCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAG                                                                      <  SRR4302535.2221856/94‑1 (MQ=60)

                        CTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGG                                                                     >  SRR4302535.2585659/1‑94 (MQ=60)

                         TGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGC                                                                    <  SRR4302535.2893912/94‑1 (MQ=60)

                         TGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGC                                                                    >  SRR4302535.54149/1‑94 (MQ=60)

                         TGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGC                                                                    >  SRR4302535.2505957/1‑94 (MQ=60)

                          GCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCG                                                                   <  SRR4302535.3617676/94‑1 (MQ=60)

                              CTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTG                                                               >  SRR4302535.1323595/1‑94 (MQ=60)

                                CAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTC                                                             <  SRR4302535.3524360/94‑1 (MQ=60)

                                CAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTC                                                             >  SRR4302535.2828398/1‑94 (MQ=60)

                                 AAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCG                                                            >  SRR4302535.3193772/1‑94 (MQ=60)

                                  AAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGT                                                           >  SRR4302535.4643187/1‑94 (MQ=60)

                                  AAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGT                                                           >  SRR4302535.1521588/1‑94 (MQ=60)

                                  AAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGT                                                           >  SRR4302535.3239573/1‑94 (MQ=60)

                                  AAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGT                                                           >  SRR4302535.3073140/1‑94 (MQ=60)

                                   AGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTT                                                          >  SRR4302535.1081875/1‑94 (MQ=60)

                                      CATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGG                                                       >  SRR4302535.1656496/1‑94 (MQ=60)

                                       ATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGA                                                      <  SRR4302535.3169821/94‑1 (MQ=60)

                                         TAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATC                                                    <  SRR4302535.747634/94‑1 (MQ=60)

                                          AAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCA                                                   >  SRR4302535.575039/1‑94 (MQ=60)

                                          AAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCA                                                   <  SRR4302535.2991885/94‑1 (MQ=60)

                                           AACGCATACATGCTTAGCACTCGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAG                                                  <  SRR4302535.3148538/94‑1 (MQ=60)

                                           AACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAG                                                  <  SRR4302535.912294/94‑1 (MQ=60)

                                           AACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAG                                                  <  SRR4302535.3522691/94‑1 (MQ=60)

                                             CGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAT                                                <  SRR4302535.2852984/94‑1 (MQ=60)

                                              GCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATG                                               >  SRR4302535.2996075/1‑94 (MQ=60)

                                              GCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATG                                               >  SRR4302535.1765077/1‑94 (MQ=60)

                                              GCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATG                                               >  SRR4302535.731828/1‑94 (MQ=60)

                                                ATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAA                                             >  SRR4302535.1340256/1‑94 (MQ=60)

                                                ATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAA                                             <  SRR4302535.2808774/94‑1 (MQ=60)

                                                ATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAA                                             >  SRR4302535.2554262/1‑94 (MQ=60)

                                                 TACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAAC                                            <  SRR4302535.3008447/94‑1 (MQ=60)

                                                  ACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACG                                           >  SRR4302535.1814823/1‑94 (MQ=60)

                                                  ACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACG                                           <  SRR4302535.347054/94‑1 (MQ=60)

                                                  ACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACG                                           <  SRR4302535.4274714/94‑1 (MQ=60)

                                                    ATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAG                                         >  SRR4302535.1717242/1‑94 (MQ=60)

                                                      GCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTC                                       >  SRR4302535.2960321/1‑94 (MQ=60)

                                                       CTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCA                                      >  SRR4302535.420503/1‑94 (MQ=60)

                                                       CTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCA                                      <  SRR4302535.4356945/94‑1 (MQ=60)

                                                       CTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCA                                      >  SRR4302535.632832/1‑94 (MQ=60)

                                                        TTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAA                                     <  SRR4302535.714559/94‑1 (MQ=60)

                                                        TTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAA                                     <  SRR4302535.3622901/94‑1 (MQ=60)

                                                         TAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAAC                                    <  SRR4302535.4001259/94‑1 (MQ=60)

                                                          AGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACG                                   <  SRR4302535.4059002/94‑1 (MQ=60)

                                                          AGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACG                                   >  SRR4302535.1373481/1‑94 (MQ=60)

                                                            CACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCT                                 >  SRR4302535.4708060/1‑94 (MQ=60)

                                                            CACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCT                                 >  SRR4302535.1763874/1‑94 (MQ=60)

                                                            CACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCT                                 <  SRR4302535.2666554/94‑1 (MQ=60)

                                                             ACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTT                                >  SRR4302535.1159544/1‑94 (MQ=60)

                                                              CACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTC                               >  SRR4302535.4200163/1‑94 (MQ=60)

                                                               ACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCA                              <  SRR4302535.1664006/94‑1 (MQ=60)

                                                                CGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAG                             <  SRR4302535.541406/94‑1 (MQ=60)

                                                                   ATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGT                          >  SRR4302535.1341450/1‑94 (MQ=60)

                                                                     ATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTAT                        >  SRR4302535.802407/1‑94 (MQ=60)

                                                                         CTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCA                    <  SRR4302535.462309/94‑1 (MQ=60)

                                                                         CTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCA                    <  SRR4302535.462311/94‑1 (MQ=60)

                                                                          TATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGGCAACGCTTCAGCGTATCCCAG                   >  SRR4302535.4158228/1‑94 (MQ=60)

                                                                           ATGGTCCGTGCTCACCAACTGACGTAGCAGTTCGCCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGT                  <  SRR4302535.3742295/94‑1 (MQ=60)

                                                                            TGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTG                 <  SRR4302535.2920843/94‑1 (MQ=60)

                                                                            TGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTG                 <  SRR4302535.956640/94‑1 (MQ=60)

                                                                             GGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGC                >  SRR4302535.2786473/1‑94 (MQ=60)

                                                                              GTCCGTGCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA               <  SRR4302535.4559140/94‑1 (MQ=60)

                                                                               TCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAG              <  SRR4302535.2996858/94‑1 (MQ=60)

                                                                                CCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCCGTGCAGC             >  SRR4302535.133205/1‑94 (MQ=60)

                                                                                CCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGGCAACGCTTCAGCGTATCCCAGTGCAGC             >  SRR4302535.4417997/1‑94 (MQ=60)

                                                                                  GTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAT           >  SRR4302535.2894062/1‑94 (MQ=60)

                                                                                  GTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAT           >  SRR4302535.1225072/1‑94 (MQ=60)

                                                                                  GCTCTCCCCAACTGACGTAGCAGTCAACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAT           <  SRR4302535.1865461/94‑1 (MQ=60)

                                                                                   TTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATC          >  SRR4302535.879043/1‑94 (MQ=60)

                                                                                    TCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCA         >  SRR4302535.4038519/1‑94 (MQ=60)

                                                                                     CTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCAC        <  SRR4302535.3351862/94‑1 (MQ=60)

                                                                                     CTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCAC        >  SRR4302535.2043158/1‑94 (MQ=60)

                                                                                          CAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTT   >  SRR4302535.766565/1‑94 (MQ=60)

                                                                                           AACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTT  >  SRR4302535.526179/1‑94 (MQ=60)

CGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTT  >  NC_000913/2289486‑2289670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`