Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,289,578	G→A	L285L (CTG→TTG)	ccmH ←	CcmH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,289,578	0	G	A	99.6%	946.1 / NA	269	L285L (CTG→TTG)	ccmH	CcmH
Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (145/123); total (145/124)
Fisher's exact test for biased strand distribution p-value = 4.61e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 277 total aligned reads displayed.

CGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTG  >  NC_000913/2289488‑2289666

cgGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACt                                                                                        <  2:872765/93‑1 (MQ=255)

  gCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGa                                                                                      >  2:5266783/1‑93 (MQ=255)

  gCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGa                                                                                      <  2:1823642/93‑1 (MQ=255)

  gCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGa                                                                                      <  1:7886810/93‑1 (MQ=255)

  gCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGa                                                                                      <  1:2746030/93‑1 (MQ=255)

   cAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGAc                                                                                     <  1:727686/93‑1 (MQ=255)

    aaCGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACg                                                                                    >  1:7143211/1‑93 (MQ=255)

     aCGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGt                                                                                   >  2:6686090/1‑93 (MQ=255)

     aCGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGt                                                                                   >  1:6566366/1‑93 (MQ=255)

      cGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATTGTCCGTTCTCACCAACTGACGTa                                                                                  >  1:6904428/1‑93 (MQ=255)

       ggCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAg                                                                                 >  1:6595092/1‑93 (MQ=255)

        gCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGc                                                                                <  2:42521/93‑1 (MQ=255)

        gCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGc                                                                                <  1:415632/93‑1 (MQ=255)

          ttCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAg                                                                              >  1:3983548/1‑93 (MQ=255)

           tCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGt                                                                             <  1:1174552/93‑1 (MQ=255)

             gCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTc                                                                           >  1:4455208/1‑93 (MQ=255)

              ccAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCa                                                                          <  1:2238409/93‑1 (MQ=255)

              ccAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCa                                                                          >  2:7213335/1‑93 (MQ=255)

               cAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAc                                                                         <  2:3940280/93‑1 (MQ=255)

               cAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAc                                                                         >  2:1435690/1‑93 (MQ=255)

                aaaTCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAcc                                                                        <  1:4051474/93‑1 (MQ=255)

                aaaTCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAcc                                                                        >  1:4845786/1‑93 (MQ=255)

                aaaTCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAcc                                                                        >  1:5497884/1‑93 (MQ=255)

                aaaTCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGATCCGTTCTCACCAACTGACGTAGCAGTTCAcc                                                                        <  2:6784635/93‑1 (MQ=255)

                 aaTCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAccg                                                                       <  2:5650011/93‑1 (MQ=255)

                 aaTCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAccg                                                                       >  2:648887/1‑93 (MQ=255)

                   tCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAccgcc                                                                     >  1:5682078/1‑93 (MQ=255)

                     gctgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGa                                                                   <  2:6946272/93‑1 (MQ=255)

                      ctgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAg                                                                  >  2:3778096/1‑93 (MQ=255)

                      ctgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAg                                                                  >  1:555266/1‑93 (MQ=255)

                       tgctgctCAAAGGCATTAAACGCATACATTCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAgg                                                                 >  1:6491193/1‑93 (MQ=255)

                       tgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAgg                                                                 <  1:161006/93‑1 (MQ=255)

                       tgctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAgg                                                                 <  1:1565198/93‑1 (MQ=255)

                         ctgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCg                                                               >  1:5708483/1‑93 (MQ=255)

                         ctgctCAAAGGCATTAAACCCATTCATTCTTAGCCCACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCg                                                               <  2:5789888/93‑1 (MQ=255)

                          tgctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAGCGCCGAGGCgg                                                              >  1:1488138/1‑93 (MQ=255)

                           gctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGt                                                             <  2:2628491/93‑1 (MQ=255)

                           gctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGt                                                             >  2:3172494/1‑93 (MQ=255)

                           gctCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGt                                                             >  2:1161746/1‑93 (MQ=255)

                             tCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTg                                                           >  2:3722665/1‑93 (MQ=255)

                             tCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTg                                                           >  1:4588586/1‑93 (MQ=255)

                              cAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGt                                                          <  2:202476/93‑1 (MQ=255)

                              cAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGt                                                          <  1:4964100/93‑1 (MQ=255)

                              cAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGt                                                          >  1:7494094/1‑93 (MQ=255)

                               aaaGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTc                                                         >  1:7722043/1‑93 (MQ=255)

                                aaGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCg                                                        >  1:25875/1‑93 (MQ=255)

                                 aGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGt                                                       >  2:508756/1‑93 (MQ=255)

                                  ggCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGGGGCGGTTGTCGtt                                                      >  2:7702905/1‑93 (MQ=255)

                                    gaTTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTgg                                                    <  1:1884182/92‑1 (MQ=255)

                                    cATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTgg                                                    <  1:903580/93‑1 (MQ=255)

                                     aTTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTggg                                                   >  2:386569/1‑93 (MQ=255)

                                      ttAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGa                                                  <  2:6236414/93‑1 (MQ=255)

                                      ttAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGa                                                  >  1:3662637/1‑93 (MQ=255)

                                      ttAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGa                                                  >  1:3494379/1‑93 (MQ=255)

                                       tAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGAt                                                 <  1:5107208/93‑1 (MQ=255)

                                        aaaCGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATc                                                >  2:4117067/1‑93 (MQ=255)

                                        aaaCGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATc                                                <  1:5861923/93‑1 (MQ=255)

                                        aaaCGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATc                                                <  2:7307802/93‑1 (MQ=255)

                                           cGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGa                                             <  2:1471559/93‑1 (MQ=255)

                                            gCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAt                                            >  2:6582722/1‑93 (MQ=255)

                                            gCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAt                                            >  2:4516461/1‑93 (MQ=255)

                                             cATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATg                                           >  2:4725643/1‑93 (MQ=255)

                                             cATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATg                                           <  2:5612892/93‑1 (MQ=255)

                                             cATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATg                                           >  1:2998911/1‑93 (MQ=255)

                                              aTACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGGGGCGGTTGTCGTTGGGATCAGATGa                                          >  1:2007425/1‑93 (MQ=255)

                                              aTACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGa                                          >  1:1263755/1‑93 (MQ=255)

                                               tACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGaa                                         <  2:50146/93‑1 (MQ=255)

                                               tACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGaa                                         <  2:2806137/93‑1 (MQ=255)

                                                    gattAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACATAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGt                                    <  1:6712302/91‑1 (MQ=255)

                                                        aGCACTCGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAAc                                <  2:7814100/93‑1 (MQ=255)

                                                        aGCACACGGATATTTCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGGGTCGAGTGTCGTTGGGAGCAGATGAACGAGTCaag                                >  2:2253040/1‑92 (MQ=255)

                                                        aGCACACGGATATTGCTATGGTCNGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAAc                                <  1:3341919/93‑1 (MQ=255)

                                                        aGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAAc                                <  1:1037095/93‑1 (MQ=255)

                                                          cacaCGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGACAACGc                              >  2:707204/1‑93 (MQ=255)

                                                             acGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTc                           <  2:3422107/93‑1 (MQ=255)

                                                             acGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTc                           >  1:5791773/1‑93 (MQ=255)

                                                              cGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCa                          <  2:275086/93‑1 (MQ=255)

                                                               ggATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAg                         >  1:1793571/1‑93 (MQ=255)

                                                                gctatTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCCGCTGTACGAGTCAACGCTTCAGc                        >  1:1676223/3‑93 (MQ=255)

                                                                   atTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGGGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTa                     >  2:2534968/1‑93 (MQ=255)

                                                                   atTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTa                     <  1:2935052/93‑1 (MQ=255)

                                                                   atTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTa                     <  2:257485/93‑1 (MQ=255)

                                                                    ttGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTAt                    >  1:5432945/1‑93 (MQ=255)

                                                                     tGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATc                   <  2:2364552/93‑1 (MQ=255)

                                                                       cTATCGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTGGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATccc                 <  2:5875019/93‑1 (MQ=255)

                                                                         aTGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAg               <  1:5284608/93‑1 (MQ=255)

                                                                          tGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGt              <  2:2862292/93‑1 (MQ=255)

                                                                          tGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGt              >  1:6272356/1‑93 (MQ=255)

                                                                               cGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTgcagc         <  2:6091150/93‑1 (MQ=255)

                                                                                 ttCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAt       >  1:5934257/1‑93 (MQ=255)

                                                                                 ttCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAt       >  1:5176768/1‑93 (MQ=255)

                                                                                 ttCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAt       >  1:2966298/1‑93 (MQ=255)

                                                                                    tcACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCAc    <  1:7165968/93‑1 (MQ=255)

                                                                                    tcACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCAc    >  2:3996857/1‑93 (MQ=255)

                                                                                    tcACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCAc    <  2:1880612/93‑1 (MQ=255)

                                                                                    tcACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCAc    <  2:2166205/93‑1 (MQ=255)

                                                                                    tcACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCAc    >  2:7407484/1‑93 (MQ=255)

                                                                                     cACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACt   <  2:1564855/93‑1 (MQ=255)

                                                                                      aCCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTg  >  2:5214187/1‑93 (MQ=255)

                                                                                      aCCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTg  <  2:3055952/93‑1 (MQ=255)

CGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTG  >  NC_000913/2289488‑2289666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTTT  >  NC_000913/2289486‑2289671

CGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAAC                                                                                              <  SRR4302543.5407851/94‑1 (MQ=60)

CGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAAC                                                                                              <  SRR4302543.318431/94‑1 (MQ=60)

CGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAAC                                                                                              <  SRR4302543.318433/94‑1 (MQ=60)

 GCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACT                                                                                             >  SRR4302543.5522741/1‑94 (MQ=60)

  CGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTG                                                                                            <  SRR4302543.820822/94‑1 (MQ=60)

    GCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGAC                                                                                          <  SRR4302543.2770997/94‑1 (MQ=60)

    GCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGAC                                                                                          <  SRR4302543.7961006/94‑1 (MQ=60)

    GCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGAC                                                                                          >  SRR4302543.7665869/1‑94 (MQ=60)

     CAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACG                                                                                         >  SRR4302543.7212624/1‑94 (MQ=60)

     CAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACG                                                                                         <  SRR4302543.734225/94‑1 (MQ=60)

      AACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGT                                                                                        >  SRR4302543.6628159/1‑94 (MQ=60)

       ACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATTGTCCGTTCTCACCAACTGACGTA                                                                                       >  SRR4302543.6969307/1‑94 (MQ=60)

        CGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAG                                                                                      >  SRR4302543.6657235/1‑94 (MQ=60)

         GGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGC                                                                                     >  SRR4302543.5783100/1‑94 (MQ=60)

         GGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGC                                                                                     >  SRR4302543.3760080/1‑94 (MQ=60)

          GCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCA                                                                                    <  SRR4302543.419516/94‑1 (MQ=60)

           CTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAG                                                                                   >  SRR4302543.4972449/1‑94 (MQ=60)

           CTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAG                                                                                   >  SRR4302543.4018884/1‑94 (MQ=60)

             TCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTT                                                                                 <  SRR4302543.1185195/94‑1 (MQ=60)

              CGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTC                                                                                >  SRR4302543.4495561/1‑94 (MQ=60)

                CCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAC                                                                              >  SRR4302543.4578797/1‑94 (MQ=60)

                CCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAC                                                                              <  SRR4302543.2258684/94‑1 (MQ=60)

                 CAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACC                                                                             >  SRR4302543.4889966/1‑94 (MQ=60)

                 CAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACC                                                                             >  SRR4302543.803212/1‑94 (MQ=60)

                 CAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACC                                                                             <  SRR4302543.4107327/94‑1 (MQ=60)

                 CAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACC                                                                             >  SRR4302543.5547759/1‑94 (MQ=60)

                  AAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCG                                                                            <  SRR4302543.4087728/94‑1 (MQ=60)

                  AAATCGCTGCTGCTCAAAGACAATTAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACATAGCAGTTCACCG                                                                            <  SRR4302543.4087727/94‑1 (MQ=60)

                    ATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCC                                                                          >  SRR4302543.5733940/1‑94 (MQ=60)

                       GCTGCTGCTCAAATGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAG                                                                       >  SRR4302543.6079662/1‑94 (MQ=60)

                       GCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAG                                                                       <  SRR4302543.6923318/94‑1 (MQ=60)

                       GCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAG                                                                       >  SRR4302543.560366/1‑94 (MQ=60)

                        CTGCTGCTCAAAGGCATTAAACGCATACATTCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGG                                                                      >  SRR4302543.6552346/1‑94 (MQ=60)

                        CTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGG                                                                      >  SRR4302543.1327957/1‑94 (MQ=60)

                        CTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGG                                                                      >  SRR4302543.4360885/1‑94 (MQ=60)

                         TGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGC                                                                     <  SRR4302543.162395/94‑1 (MQ=60)

                         TGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGC                                                                     <  SRR4302543.6740095/94‑1 (MQ=60)

                         TGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGC                                                                     <  SRR4302543.2971868/94‑1 (MQ=60)

                         TGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGC                                                                     <  SRR4302543.1579178/94‑1 (MQ=60)

                          GCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCG                                                                    >  SRR4302543.5760561/1‑94 (MQ=60)

                          GCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCG                                                                    <  SRR4302543.1230739/94‑1 (MQ=60)

                           CTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCAGCGCCGAGGCGG                                                                   >  SRR4302543.1501530/1‑94 (MQ=60)

                           CTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGG                                                                   >  SRR4302543.2097718/1‑94 (MQ=60)

                              CTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTG                                                                >  SRR4302543.2681678/1‑94 (MQ=60)

                              CTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTG                                                                >  SRR4302543.4630265/1‑94 (MQ=60)

                               TCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGT                                                               <  SRR4302543.3015689/94‑1 (MQ=60)

                               TCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGT                                                               <  SRR4302543.6216989/94‑1 (MQ=60)

                               TCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGT                                                               <  SRR4302543.5607215/94‑1 (MQ=60)

                               TCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGT                                                               >  SRR4302543.7565778/1‑94 (MQ=60)

                                CAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTC                                                              >  SRR4302543.7795054/1‑94 (MQ=60)

                                CAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTC                                                              <  SRR4302543.5009287/94‑1 (MQ=60)

                                CAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTC                                                              <  SRR4302543.5009288/94‑1 (MQ=60)

                                 AAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCG                                                             >  SRR4302543.1575086/1‑94 (MQ=60)

                                 AAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCG                                                             >  SRR4302543.5223928/1‑94 (MQ=60)

                                 AAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCG                                                             >  SRR4302543.26105/1‑94 (MQ=60)

                                    GGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTG                                                          >  SRR4302543.4787786/1‑94 (MQ=60)

                                     GCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGG                                                         <  SRR4302543.4543236/94‑1 (MQ=60)

                                     GCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGG                                                         >  SRR4302543.5022241/1‑94 (MQ=60)

                                      GATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGG                                                        <  SRR4302543.1901114/94‑1 (MQ=60)

                                      CATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGG                                                        >  SRR4302543.7089409/1‑94 (MQ=60)

                                      CATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGG                                                        >  SRR4302543.107179/1‑94 (MQ=60)

                                      CATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGG                                                        <  SRR4302543.911539/94‑1 (MQ=60)

                                       ATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGA                                                       >  SRR4302543.4062130/1‑94 (MQ=60)

                                       ATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGA                                                       >  SRR4302543.3694802/1‑94 (MQ=60)

                                       ATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGA                                                       >  SRR4302543.1630627/1‑94 (MQ=60)

                                       ATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGA                                                       >  SRR4302543.3525648/1‑94 (MQ=60)

                                       ATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGGTGTGGTTGGGA                                                       >  SRR4302543.1364429/1‑94 (MQ=60)

                                         TAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATC                                                     <  SRR4302543.962319/94‑1 (MQ=60)

                                         TAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATC                                                     <  SRR4302543.5153424/94‑1 (MQ=60)

                                          AAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCA                                                    <  SRR4302543.5915274/94‑1 (MQ=60)

                                             CGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTCGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAT                                                 >  SRR4302543.5976994/1‑94 (MQ=60)

                                             CGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAT                                                 <  SRR4302543.7931699/94‑1 (MQ=60)

                                             CGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGAG                                                 >  SRR4302543.5976993/1‑94 (MQ=60)

                                              GCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATG                                                >  SRR4302543.7504618/1‑94 (MQ=60)

                                              GCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATG                                                >  SRR4302543.3026105/1‑94 (MQ=60)

                                               CATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGGGGCGGTTGTCGTTGGGATCAGATGA                                               >  SRR4302543.2025466/1‑94 (MQ=60)

                                               CATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGA                                               <  SRR4302543.6652074/94‑1 (MQ=60)

                                               CATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGA                                               >  SRR4302543.1275069/1‑94 (MQ=60)

                                                atcccagcttcgcaacccGATATTGCTATGGTCCGTTCGCACCAACTGGCGTAGCAGTTCCCCGCCGCGGCGGTTGTCGTTGGGATCAGATGAA                                              <  SRR4302543.5882022/76‑1 (MQ=60)

                                                ATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAA                                              <  SRR4302543.5882023/94‑1 (MQ=60)

                                                ATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAA                                              >  SRR4302543.5811580/1‑94 (MQ=60)

                                                ATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAA                                              >  SRR4302543.2108795/1‑94 (MQ=60)

                                                ATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAA                                              >  SRR4302543.5596168/1‑94 (MQ=60)

                                                 TACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAAC                                             <  SRR4302543.3428821/94‑1 (MQ=60)

                                                 TACATGCTGAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAAC                                             <  SRR4302543.2427544/94‑1 (MQ=60)

                                                  ACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACG                                            >  SRR4302543.1253076/1‑94 (MQ=60)

                                                  ACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACG                                            <  SRR4302543.2342954/94‑1 (MQ=60)

                                                   CATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAAATGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGA                                           >  SRR4302543.4959390/1‑94 (MQ=60)

                                                    ATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAG                                          >  SRR4302543.6577045/1‑94 (MQ=60)

                                                    ATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAG                                          <  SRR4302543.5403621/94‑1 (MQ=60)

                                                     TGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGT                                         >  SRR4302543.3820761/1‑94 (MQ=60)

                                                      GATTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACATAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTC                                        <  SRR4302543.6775718/94‑1 (MQ=60)

                                                       CTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCA                                       >  SRR4302543.361570/1‑94 (MQ=60)

                                                       CGTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGTTTGTCGTTGGGATCAGATGAACGAGTCA                                       <  SRR4302543.5625745/94‑1 (MQ=60)

                                                        TTAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAA                                      >  SRR4302543.6353352/1‑94 (MQ=60)

                                                         TAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAAC                                     <  SRR4302543.7468980/94‑1 (MQ=60)

                                                         TAGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAAC                                     <  SRR4302543.6683949/94‑1 (MQ=60)

                                                          AGCACACGGATATTGCTATGGTCNGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACG                                    <  SRR4302543.3372016/94‑1 (MQ=60)

                                                          AGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACG                                    <  SRR4302543.1046314/94‑1 (MQ=60)

                                                          AGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACG                                    <  SRR4302543.3112960/94‑1 (MQ=60)

                                                          AGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACG                                    <  SRR4302543.7011349/94‑1 (MQ=60)

                                                          AGCACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACG                                    <  SRR4302543.5422818/94‑1 (MQ=60)

                                                            CACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCT                                  >  SRR4302543.5737029/1‑94 (MQ=60)

                                                            CACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCT                                  <  SRR4302543.2773626/94‑1 (MQ=60)

                                                            CACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCT                                  >  SRR4302543.5182394/1‑94 (MQ=60)

                                                             ACACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTT                                 <  SRR4302543.3518964/94‑1 (MQ=60)

                                                              CACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTC                                >  SRR4302543.5844465/1‑94 (MQ=60)

                                                               ACGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCA                               <  SRR4302543.1709052/94‑1 (MQ=60)

                                                               ACGGATATTGCTATGGTCCGTGCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCA                               <  SRR4302543.7213990/94‑1 (MQ=60)

                                                                CGGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAG                              >  SRR4302543.1809617/1‑94 (MQ=60)

                                                                 GGCTATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCCGCTGTACGAGTCAACGCTTCAGC                             >  SRR4302543.1691249/1‑94 (MQ=60)

                                                                 GGATATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGC                             >  SRR4302543.1691250/1‑94 (MQ=60)

                                                                     ATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTAT                         >  SRR4302543.6470678/1‑94 (MQ=60)

                                                                     ATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTAT                         <  SRR4302543.6589027/94‑1 (MQ=60)

                                                                     ATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTAT                         <  SRR4302543.7249055/94‑1 (MQ=60)

                                                                     ATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTAT                         <  SRR4302543.2961698/94‑1 (MQ=60)

                                                                     ATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTAT                         >  SRR4302543.5482305/1‑94 (MQ=60)

                                                                     ATTGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTAT                         >  SRR4302543.5482304/1‑94 (MQ=60)

                                                                       TGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCC                       <  SRR4302543.2728574/94‑1 (MQ=60)

                                                                       TGCTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCC                       <  SRR4302543.1514130/94‑1 (MQ=60)

                                                                         CTATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCA                     >  SRR4302543.6817620/1‑94 (MQ=60)

                                                                           ATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGT                   <  SRR4302543.1906924/94‑1 (MQ=60)

                                                                           ATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGT                   >  SRR4302543.6331497/1‑94 (MQ=60)

                                                                           ATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGT                   <  SRR4302543.182469/94‑1 (MQ=60)

                                                                           ATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGT                   <  SRR4302543.181061/94‑1 (MQ=60)

                                                                           ATGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGT                   <  SRR4302543.5332302/94‑1 (MQ=60)

                                                                            TGGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTG                  <  SRR4302543.4107876/94‑1 (MQ=60)

                                                                             GGTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGC                 >  SRR4302543.7628655/1‑94 (MQ=60)

                                                                              GTCCGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCA                >  SRR4302543.3117780/1‑94 (MQ=60)

                                                                                 CGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCA             >  SRR4302543.5231231/1‑94 (MQ=60)

                                                                                 CGTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCA             >  SRR4302543.2994698/1‑94 (MQ=60)

                                                                                  GTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAT            >  SRR4302543.5988533/1‑94 (MQ=60)

                                                                                  GTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAT            >  SRR4302543.2819211/1‑94 (MQ=60)

                                                                                  GTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAT            >  SRR4302543.2993236/1‑94 (MQ=60)

                                                                                  GTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAT            >  SRR4302543.5223503/1‑94 (MQ=60)

                                                                                  GTTCTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCAT            >  SRR4302543.4670686/1‑94 (MQ=60)

                                                                                     CTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGCGCAGCATCAC         >  SRR4302543.1634445/1‑94 (MQ=60)

                                                                                     CTCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGGTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCAC         >  SRR4302543.1592920/1‑94 (MQ=60)

                                                                                      TCACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACT        <  SRR4302543.7235570/94‑1 (MQ=60)

                                                                                       CACCAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTG       >  SRR4302543.7273000/1‑94 (MQ=60)

                                                                                          CAACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTT    <  SRR4302543.5789978/94‑1 (MQ=60)

                                                                                           AACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTT   >  SRR4302543.2054900/1‑94 (MQ=60)

                                                                                           AACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTT   <  SRR4302543.1724047/94‑1 (MQ=60)

                                                                                            ACTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTTT  <  SRR4302543.6014379/94‑1 (MQ=60)

CGCGGCAACGGCTTCGCCAAATCGCTGCTGCTCAAAGGCATTAAACGCATACATGCTTAGCACACGGATATTGCTATGGTCCGTTCTCACCAGCTGACGTAGCAGTTCACCGCCGAGGCGGTTGTCGTTGGGATCAGATGAACGAGTCAACGCTTCAGCGTATCCCAGTGCAGCATCACTGTTTTT  >  NC_000913/2289486‑2289671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`