Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,297,335 |
A→G |
G88G (GGT→GGC) |
napH ← |
ferredoxin‑type protein: electron transfer |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,297,335 | 0 | A | G | 99.1%
| 347.3
/ ‑4.6
| 113 | G88G (GGT→GGC) | napH | ferredoxin‑type protein: electron transfer |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (45/67); total (46/67) |
| Fisher's exact test for biased strand distribution p-value = 4.07e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.40e-01 |
Only 100 of 129 total aligned reads displayed.
CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAA > NC_000913/2297245‑2297424
|
cGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATcaccgcgcc < 2:2392175/93‑1 (MQ=255)
gCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATcaccgcgccg > 2:2472103/1‑93 (MQ=255)
cTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCACGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCgg < 1:1311138/93‑1 (MQ=255)
tAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGt > 1:4558915/1‑93 (MQ=255)
tAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGACGGt > 2:3831931/1‑93 (MQ=255)
aaGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTc > 2:2669389/1‑93 (MQ=255)
aGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCa < 2:1315212/93‑1 (MQ=255)
gTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCaa > 1:4277078/1‑93 (MQ=255)
tCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAAc < 2:817279/93‑1 (MQ=255)
ggTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGc < 2:2396841/93‑1 (MQ=255)
ggTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGc < 2:1736608/93‑1 (MQ=255)
gTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGcc > 2:3438139/1‑93 (MQ=255)
gTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGcc > 1:3704991/1‑93 (MQ=255)
gTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGcc < 2:650724/93‑1 (MQ=255)
aaTCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAc > 2:3239289/1‑93 (MQ=255)
aTCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAcc > 1:2196224/1‑93 (MQ=255)
aTCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCAcc < 1:4420738/93‑1 (MQ=255)
ggTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTgg < 2:1664656/93‑1 (MQ=255)
gTTCGGCGGGCAGACCCAGCTGCAAAATAAACGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggc > 2:1129777/1‑93 (MQ=255)
tCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcag > 2:2909417/1‑93 (MQ=255)
aGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcaggc < 1:426646/93‑1 (MQ=255)
aGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcaggc < 1:2818095/93‑1 (MQ=255)
gCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTggcaggca > 2:348149/1‑93 (MQ=255)
gggCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGa > 1:2251650/1‑93 (MQ=255)
ggCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGAt < 2:14782/93‑1 (MQ=255)
gACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGAcc > 2:1903599/1‑93 (MQ=255)
ccAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACt > 2:3421134/1‑93 (MQ=255)
cAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTg < 1:3764133/93‑1 (MQ=255)
aGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTgg < 2:3750295/93‑1 (MQ=255)
gCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGc > 2:4597343/1‑93 (MQ=255)
cAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGa < 2:1367129/93‑1 (MQ=255)
cAAAATAATCGCTTTCCCACCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGa < 1:2613490/93‑1 (MQ=255)
aaaTAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACt > 2:4402750/1‑93 (MQ=255)
aataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACtt < 2:3305980/93‑1 (MQ=255)
ataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACttt < 1:3730452/93‑1 (MQ=255)
ataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACttt < 2:1311438/93‑1 (MQ=255)
ataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACttt < 2:1654048/93‑1 (MQ=255)
ataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACttt < 2:3071792/93‑1 (MQ=255)
ataatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACttt < 1:542354/93‑1 (MQ=255)
ataatCGCTTCCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACttt < 2:1774035/93‑1 (MQ=255)
taatCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTg > 1:4418927/1‑93 (MQ=255)
aatCCCTGTCCCGCCAGGGCGTGGAGCACGGTCATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGc < 2:3252970/93‑1 (MQ=255)
atCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCa < 2:2894244/93‑1 (MQ=255)
atCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCa > 1:3548287/1‑93 (MQ=255)
tCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAg > 1:3741784/1‑93 (MQ=255)
cGCTTTCCAGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGc > 2:4575264/1‑93 (MQ=255)
ccTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCg < 2:2153873/92‑1 (MQ=255)
cTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGt < 1:3057679/93‑1 (MQ=255)
ttCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCGCCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtca < 1:1419781/93‑1 (MQ=255)
tccccGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtca < 1:3173865/91‑1 (MQ=255)
tCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGGCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcat < 2:3632407/93‑1 (MQ=255)
cccGCCAGGGCGTAGAGCACGGTGATAATCGCCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCTtcatc < 2:1335991/93‑1 (MQ=255)
ccGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcatca < 2:2880735/93‑1 (MQ=255)
ccGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGtcatca < 2:732598/93‑1 (MQ=255)
cGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAg < 2:2416241/93‑1 (MQ=255)
gCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGc > 2:3719454/1‑93 (MQ=255)
ccAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCg > 2:1310642/1‑93 (MQ=255)
ccAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCg > 1:4192188/1‑93 (MQ=255)
ccAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCg > 1:1548261/1‑93 (MQ=255)
ccAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCg > 1:2911270/1‑93 (MQ=255)
cAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCgg < 2:437430/93‑1 (MQ=255)
aGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGa < 1:1749208/93‑1 (MQ=255)
gggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAt < 2:1734309/93‑1 (MQ=255)
gggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAt < 2:2025031/93‑1 (MQ=255)
gggCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAt < 1:1512897/93‑1 (MQ=255)
gCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCg < 2:1623389/93‑1 (MQ=255)
cGTAGAGCCCGGTGATAATCCCCGCGGCGGTCAACGCCCCCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCgg < 2:1798233/93‑1 (MQ=255)
cGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCgg < 1:247715/93‑1 (MQ=255)
tAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTc > 2:2350255/1‑93 (MQ=255)
tAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTc > 2:3888419/1‑93 (MQ=255)
agagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCa < 1:1806945/93‑1 (MQ=255)
agagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCa > 1:834751/1‑93 (MQ=255)
agagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCa < 2:756841/93‑1 (MQ=255)
gagCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAg > 1:2583099/1‑93 (MQ=255)
aCGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGa > 1:2318753/1‑93 (MQ=255)
aCGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGa > 1:2586491/1‑93 (MQ=255)
cGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGaa > 1:1541390/1‑93 (MQ=255)
cGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGaa < 2:1622285/93‑1 (MQ=255)
cGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGaa < 2:3466590/93‑1 (MQ=255)
ggTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATGAGCGGCTCGGTCAGCGGAAc < 2:3830846/93‑1 (MQ=255)
ggTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAAc < 1:3455784/93‑1 (MQ=255)
gTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACg < 1:3506399/93‑1 (MQ=255)
tGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACgg > 2:4590075/1‑93 (MQ=255)
tGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACgg < 1:1970201/93‑1 (MQ=255)
tGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACgg < 2:4049078/93‑1 (MQ=255)
tGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACgg < 1:1200961/93‑1 (MQ=255)
tGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACgg > 2:659657/1‑93 (MQ=255)
gATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGgt > 1:327222/1‑93 (MQ=255)
atcaTCCCCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGgtg < 1:109402/90‑1 (MQ=255)
aTAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGgtg > 2:4571755/1‑93 (MQ=255)
tAATCACCGCGCCGGTCAGCGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGgtgt < 2:1781592/93‑1 (MQ=255)
tAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGgtgt > 2:149818/1‑93 (MQ=255)
tAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGgtgt < 2:554586/93‑1 (MQ=255)
aTCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCg < 1:2771779/93‑1 (MQ=255)
caccgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGaa < 1:1963860/93‑1 (MQ=255)
accgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAt > 2:4385317/1‑93 (MQ=255)
accgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAt > 1:3471328/1‑93 (MQ=255)
accgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAt < 2:2010140/93‑1 (MQ=255)
ccgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATa < 2:2865842/93‑1 (MQ=255)
cgcgccgGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATaa < 1:671233/93‑1 (MQ=255)
|
CGCTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAA > NC_000913/2297245‑2297424
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG > NC_000913/2297247‑2297427
|
CTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGT > SRR4302535.4590040/1‑94 (MQ=60)
CTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCACGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGT < SRR4302535.1320509/94‑1 (MQ=60)
TAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTC > SRR4302535.3492831/1‑94 (MQ=60)
AGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAA > SRR4302535.4306351/1‑94 (MQ=60)
GGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCC > SRR4302535.3730650/1‑94 (MQ=60)
AATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACC < SRR4302535.3722433/94‑1 (MQ=60)
AATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACC > SRR4302535.2211876/1‑94 (MQ=60)
AATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACC > SRR4302535.1655566/1‑94 (MQ=60)
ATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCG < SRR4302535.4451006/94‑1 (MQ=60)
GTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCA < SRR4302535.2436036/94‑1 (MQ=60)
AGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCA < SRR4302535.2838113/94‑1 (MQ=60)
AGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCA < SRR4302535.429617/94‑1 (MQ=60)
CGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGA > SRR4302535.2267684/1‑94 (MQ=60)
CCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACT < SRR4302535.1495227/94‑1 (MQ=60)
CAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGG < SRR4302535.3790136/94‑1 (MQ=60)
AGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGC > SRR4302535.2750751/1‑94 (MQ=60)
TGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGacag > SRR4302535.440237/1‑90 (MQ=60)
CAAAATAATCGCTTTCCCACCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGAC < SRR4302535.2632235/94‑1 (MQ=60)
ATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTG < SRR4302535.3756285/94‑1 (MQ=60)
ATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTG < SRR4302535.546143/94‑1 (MQ=60)
ATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTG > SRR4302535.4449183/1‑94 (MQ=60)
AATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCA > SRR4302535.3572920/1‑94 (MQ=60)
ATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAG > SRR4302535.3767675/1‑94 (MQ=60)
CTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTC < SRR4302535.3079071/94‑1 (MQ=60)
TTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCA < SRR4302535.488911/94‑1 (MQ=60)
TTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCGCCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCAT < SRR4302535.1429919/94‑1 (MQ=60)
TCCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCAT < SRR4302535.3195832/94‑1 (MQ=60)
GCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCG > SRR4302535.4220876/1‑94 (MQ=60)
GCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCG > SRR4302535.1559414/1‑94 (MQ=60)
GCCAGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCG > SRR4302535.2931833/1‑94 (MQ=60)
AGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAT > SRR4302535.2170425/1‑94 (MQ=60)
AGGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGAT < SRR4302535.1761860/94‑1 (MQ=60)
GGGCGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATC < SRR4302535.1523796/94‑1 (MQ=60)
CGTAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGT < SRR4302535.249414/94‑1 (MQ=60)
TAGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCA > SRR4302535.840604/1‑94 (MQ=60)
AGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAG < SRR4302535.3881773/94‑1 (MQ=60)
AGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAG > SRR4302535.2601658/1‑94 (MQ=60)
AGAGCACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAG < SRR4302535.1819999/94‑1 (MQ=60)
CACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGA > SRR4302535.2605066/1‑94 (MQ=60)
CACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGA > SRR4302535.2335351/1‑94 (MQ=60)
ACGGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAA > SRR4302535.1552504/1‑94 (MQ=60)
GGTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACG < SRR4302535.3479804/94‑1 (MQ=60)
GTGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGG < SRR4302535.3530768/94‑1 (MQ=60)
TGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGT > SRR4302535.329490/1‑94 (MQ=60)
TGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGT < SRR4302535.1209565/94‑1 (MQ=60)
TGATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGT < SRR4302535.1984394/94‑1 (MQ=60)
GATAATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTG < SRR4302535.3032817/94‑1 (MQ=60)
ATCATCCCCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGT < SRR4302535.110177/94‑1 (MQ=60)
ATCACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGA < SRR4302535.2791516/94‑1 (MQ=60)
CACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAT < SRR4302535.1978019/94‑1 (MQ=60)
CACCGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAAT > SRR4302535.3495450/1‑94 (MQ=60)
CGCGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAAC < SRR4302535.675919/94‑1 (MQ=60)
CGCCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG < SRR4302535.1982298/94‑1 (MQ=60)
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CTAAGTCGGTAATCGGGTTCAGCGGGCAGACCCAGCTGCAAAATAATCGCTTTCCCGCCAGGGCGTAGAGCACGGTGATAATCACCGCACCGGTCAACGCCACCGTGGCAGGCAGATGACCACTGGCAAGACTTTGCAGCGTCATCAGCGGATCGGTCAGCGGAACGGTGTCGAATAACAG > NC_000913/2297247‑2297427
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
