Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,298,561 |
T→C |
H738R (CAC→CGC) |
napA ← |
putative nitrate reductase 3 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,298,561 | 0 | T | C | 99.0%
| 287.1
/ ‑4.7
| 97 | H738R (CAC→CGC) | napA | putative nitrate reductase 3 |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (55/41); total (55/42) |
| Fisher's exact test for biased strand distribution p-value = 4.33e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.22e-01 |
Only 100 of 113 total aligned reads displayed.
GAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCC > NC_000913/2298471‑2298650
|
gaAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAggcgcggcgc > 2:1322709/1‑93 (MQ=255)
aaaCCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCa > 1:3359211/1‑93 (MQ=255)
aaCCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAg > 2:1119265/1‑93 (MQ=255)
aaCCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAg > 1:275991/1‑93 (MQ=255)
aaCCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAg > 2:4276172/1‑93 (MQ=255)
aCCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGt > 1:3046536/1‑93 (MQ=255)
ccACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGtt > 2:2988619/1‑93 (MQ=255)
cactttcactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTc > 1:129378/1‑93 (MQ=255)
cctttcgctttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCt < 2:737446/92‑1 (MQ=255)
actttcactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCt > 1:3264518/1‑93 (MQ=255)
actttcactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCt > 1:3395035/1‑93 (MQ=255)
ctttcactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTg > 1:2734294/1‑93 (MQ=255)
ctttcactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTg < 1:1721346/93‑1 (MQ=255)
tttcactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGAGCGGCGCAGTTCTgg > 1:4014644/1‑93 (MQ=255)
tttcactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGCAAGGCGCGGCGCAGTTCTgg > 1:404394/1‑93 (MQ=255)
ttcactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGt < 1:1754650/93‑1 (MQ=255)
ttcactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGt > 1:1716774/1‑93 (MQ=255)
tcactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTa > 2:1801615/1‑93 (MQ=255)
cactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTac < 1:1124772/93‑1 (MQ=255)
cactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGAACAGCTTACGCGAAGGCGCGGCGCAGTTCTGGTac > 2:2370802/1‑93 (MQ=255)
tctttGTCGCCAGGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAAAAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTaca < 2:2124384/92‑1 (MQ=255)
actttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTaca > 1:1741520/1‑93 (MQ=255)
ctttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTacac < 2:249015/93‑1 (MQ=255)
tttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACg < 2:3396138/93‑1 (MQ=255)
tttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACg > 2:1969665/1‑93 (MQ=255)
tGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGc > 1:1864630/1‑93 (MQ=255)
tGTCGCCACCGCGCAGATCGCGCGCTTTCGCATCCAGCCGGGGAAAAAACAGGACCGCTTCAGGGAAAGCGCGGCGCAGTTCTGGTACACggt > 2:412175/1‑92 (MQ=255)
gTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCg > 2:1680704/1‑93 (MQ=255)
ccACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTc > 2:1463687/1‑93 (MQ=255)
cACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCa > 2:1450809/1‑93 (MQ=255)
cACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCa < 1:2685417/93‑1 (MQ=255)
aCGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGCCCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCAt < 2:3316458/93‑1 (MQ=255)
aCGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCAt > 1:2342577/1‑93 (MQ=255)
ggCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATAc > 1:3370084/1‑93 (MQ=255)
gcgcAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACt < 1:343392/93‑1 (MQ=255)
gcgcAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACt < 2:1811256/93‑1 (MQ=255)
gcAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGc > 1:1454501/1‑93 (MQ=255)
gcAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGc > 2:2272207/1‑93 (MQ=255)
gcAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGc > 1:2162527/1‑93 (MQ=255)
aGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCg > 2:803441/1‑93 (MQ=255)
gATCGCGCGCTTTCGCATCCAGCGGGTGAATACACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTCTTACACGGCGAGTCATACTCCCgc > 2:3141717/1‑92 (MQ=255)
gATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGAGAGTCATACTGCCgg > 1:4508972/1‑93 (MQ=255)
gATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCGTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCgg > 1:253997/1‑93 (MQ=255)
cgcTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCa > 2:1534545/1‑93 (MQ=255)
cgcTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCa < 2:3402532/93‑1 (MQ=255)
gcTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAg > 2:906187/1‑93 (MQ=255)
gcTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAg > 1:3134325/1‑93 (MQ=255)
gcTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAg > 1:62041/1‑93 (MQ=255)
gcTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAg > 1:212077/1‑93 (MQ=255)
gcTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAg < 1:2350032/93‑1 (MQ=255)
gcTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAg > 1:3641100/1‑93 (MQ=255)
gcTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCCAGTCATACTGCCGGTGTGCCAg > 2:2517508/1‑93 (MQ=255)
cTTTCGGATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGAGCAGTTCTGGTACACGGCGAGTCATACTCACGGTGTGCCAgg > 2:4449979/1‑92 (MQ=255)
tttCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTg > 2:476685/1‑93 (MQ=255)
cGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTc < 2:1905932/93‑1 (MQ=255)
gCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTcc < 2:3880670/93‑1 (MQ=255)
aTCCAGCGGGGGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGGCATACTGCCGGTGTGCCAGTGCTCCAg > 2:1356330/1‑93 (MQ=255)
tCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGa > 1:3242260/1‑93 (MQ=255)
tCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGa > 1:29249/1‑93 (MQ=255)
ccAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGaa < 2:3578191/93‑1 (MQ=255)
ccAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGaa < 1:3357379/93‑1 (MQ=255)
cAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAAc < 2:1990391/93‑1 (MQ=255)
cAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAAc > 1:4183771/1‑93 (MQ=255)
cAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAAc < 2:455098/93‑1 (MQ=255)
gCGGGTGAATAAACAGGACCGCTGCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAAcgc < 2:1169031/93‑1 (MQ=255)
gggTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGt > 2:2471487/1‑93 (MQ=255)
ggTGAATAAACAGGACCGCTTCCGGGAAGGCGGGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTc < 2:222202/93‑1 (MQ=255)
ggTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTc < 2:3351368/93‑1 (MQ=255)
ggTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTc < 1:1330556/93‑1 (MQ=255)
tGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCg > 2:3550419/1‑93 (MQ=255)
aaTAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGt > 2:3022990/1‑93 (MQ=255)
aaTAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGt > 1:2944523/1‑93 (MQ=255)
aaTAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACCCGGCCgtg > 2:3313507/1‑91 (MQ=255)
aTAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTa < 2:2877609/93‑1 (MQ=255)
aTAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTa < 1:4115572/93‑1 (MQ=255)
aTAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTa < 2:3255781/93‑1 (MQ=255)
tAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTag > 1:735222/1‑93 (MQ=255)
tAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTag > 2:4013297/1‑93 (MQ=255)
tAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTag > 2:1908126/1‑93 (MQ=255)
aCAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTagaga < 1:4666563/93‑1 (MQ=255)
aCAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTagaga < 1:2568388/93‑1 (MQ=255)
cAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTagagag < 2:897354/93‑1 (MQ=255)
cAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTagagag < 2:558579/93‑1 (MQ=255)
cAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTagagag > 2:4343945/1‑93 (MQ=255)
ggACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGcc < 2:3380574/93‑1 (MQ=255)
gACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCca > 1:3522886/1‑93 (MQ=255)
ccGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCcaca < 1:2890489/93‑1 (MQ=255)
cGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAg < 1:614399/93‑1 (MQ=255)
gCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAgg > 2:2532808/1‑93 (MQ=255)
gCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAgg < 1:4602159/93‑1 (MQ=255)
gCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAgg > 2:2332322/1‑93 (MQ=255)
gCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAgg > 2:704943/1‑93 (MQ=255)
cTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGt < 2:2751271/93‑1 (MQ=255)
ttCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTc > 2:3263834/1‑93 (MQ=255)
tgccGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTc < 2:4449668/91‑1 (MQ=255)
cGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTa < 1:3567394/93‑1 (MQ=255)
cGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTa < 1:2310945/93‑1 (MQ=255)
ggcgcggcgcAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTc < 1:4614596/93‑1 (MQ=255)
ggcgcggcgcAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTc < 1:638786/93‑1 (MQ=255)
cgGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATcc < 1:4063524/93‑1 (MQ=255)
|
GAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCC > NC_000913/2298471‑2298650
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGT > NC_000913/2298468‑2298653
|
CGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGC < SRR4302535.2549662/94‑1 (MQ=60)
GAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCG < SRR4302535.244423/94‑1 (MQ=60)
GAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCA > SRR4302535.3382593/1‑94 (MQ=60)
AAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAG > SRR4302535.277914/1‑94 (MQ=60)
AACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGT > SRR4302535.3067879/1‑94 (MQ=60)
CCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTC > SRR4302535.130289/1‑94 (MQ=60)
CACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCT > SRR4302535.3418655/1‑94 (MQ=60)
CACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCT > SRR4302535.3287190/1‑94 (MQ=60)
ACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTG > SRR4302535.2753805/1‑94 (MQ=60)
CTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGG < SRR4302535.1733795/94‑1 (MQ=60)
CTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGAGCGGCGCAGTTCTGG > SRR4302535.4042101/1‑94 (MQ=60)
CTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGCAAGGCGCGGCGCAGTTCTGG > SRR4302535.407226/1‑94 (MQ=60)
TTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGT > SRR4302535.1729195/1‑94 (MQ=60)
TTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTA < SRR4302535.1767331/94‑1 (MQ=60)
CACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACA < SRR4302535.1132797/94‑1 (MQ=60)
CACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACA > SRR4302535.4524678/1‑94 (MQ=60)
CACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACA > SRR4302535.1754107/1‑94 (MQ=60)
TTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGC > SRR4302535.1878074/1‑94 (MQ=60)
CGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGT > SRR4302535.3225637/1‑94 (MQ=60)
CACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCAT > SRR4302535.2359340/1‑94 (MQ=60)
CACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCAT < SRR4302535.2704619/94‑1 (MQ=60)
CGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATAC > SRR4302535.3393531/1‑94 (MQ=60)
GCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTG < SRR4302535.345764/94‑1 (MQ=60)
CGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGC > SRR4302535.1464911/1‑94 (MQ=60)
CGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGC > SRR4302535.2178044/1‑94 (MQ=60)
AGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGAGAGTCATACTGCCGG > SRR4302535.4539912/1‑94 (MQ=60)
AGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCGTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGG > SRR4302535.255750/1‑94 (MQ=60)
GCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCA > SRR4302535.3532016/1‑94 (MQ=60)
CGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAG > SRR4302535.62505/1‑94 (MQ=60)
CGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAG > SRR4302535.3666321/1‑94 (MQ=60)
CGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAG > SRR4302535.213535/1‑94 (MQ=60)
CGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAG > SRR4302535.3156146/1‑94 (MQ=60)
GCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGT < SRR4302535.2366879/94‑1 (MQ=60)
TTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTAATACTGCCGGTGTGCCAGTGCT < SRR4302535.1853272/94‑1 (MQ=60)
ATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGA > SRR4302535.29476/1‑94 (MQ=60)
ATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGA > SRR4302535.3264780/1‑94 (MQ=60)
CCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAAC > SRR4302535.4212398/1‑94 (MQ=60)
CCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAAC < SRR4302535.3380753/94‑1 (MQ=60)
GCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCG > SRR4302535.2590399/1‑94 (MQ=60)
GGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCC < SRR4302535.1340046/94‑1 (MQ=60)
GAATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGT > SRR4302535.2965221/1‑94 (MQ=60)
ATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAG > SRR4302535.740391/1‑94 (MQ=60)
ATAAACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAG < SRR4302535.4143743/94‑1 (MQ=60)
ACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAG < SRR4302535.4698106/94‑1 (MQ=60)
ACAGGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAG < SRR4302535.2586863/94‑1 (MQ=60)
GGACCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCA > SRR4302535.3547352/1‑94 (MQ=60)
CCGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAG < SRR4302535.2910939/94‑1 (MQ=60)
CGCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGG < SRR4302535.618671/94‑1 (MQ=60)
GCTTCCGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGT < SRR4302535.4633456/94‑1 (MQ=60)
TGCGGGAGGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATGCTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGT < SRR4302535.1004078/94‑1 (MQ=60)
CGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTAC < SRR4302535.3592130/94‑1 (MQ=60)
CGGGAAGGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTAC < SRR4302535.2327482/94‑1 (MQ=60)
GGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCA < SRR4302535.4645950/94‑1 (MQ=60)
GGCGCGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCA < SRR4302535.643251/94‑1 (MQ=60)
CGGCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCG < SRR4302535.4091333/94‑1 (MQ=60)
GCGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGT < SRR4302535.2209504/94‑1 (MQ=60)
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CGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGT > NC_000913/2298468‑2298653
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
