Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,318,996 |
G→A |
D312N (GAC→AAC) |
atoS → |
AtoS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,318,996 | 0 | G | A | 100.0%
| 579.5
/ NA
| 158 | D312N (GAC→AAC) | atoS | AtoS |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (77/81); total (77/81) |
Only 100 of 163 total aligned reads displayed.
GGTGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGTGAC > NC_000913/2318906‑2319085
|
ggTGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAAc < 1:1596818/93‑1 (MQ=255)
gTGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACa > 1:2162152/1‑93 (MQ=255)
tGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTcaacaa > 2:2133115/1‑93 (MQ=255)
gATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAAt > 1:2560663/1‑93 (MQ=255)
tGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATAc > 1:406916/1‑93 (MQ=255)
gTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACt < 1:4215478/93‑1 (MQ=255)
tAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTc > 2:3088442/1‑93 (MQ=255)
tAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTc < 1:3538667/93‑1 (MQ=255)
tAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTc < 2:3073669/93‑1 (MQ=255)
aaCCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCa < 2:647707/93‑1 (MQ=255)
aaCCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCa < 2:1727986/93‑1 (MQ=255)
ccaccaTGAACCCAGCAGCAGAATTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGt < 2:355107/93‑1 (MQ=255)
caccaTGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGtt > 1:1100487/1‑93 (MQ=255)
caccaTGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGtt < 2:4523021/93‑1 (MQ=255)
accaTGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTc > 2:509227/1‑93 (MQ=255)
accaTGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTc < 2:536268/93‑1 (MQ=255)
ccaTGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCt > 2:3159916/1‑93 (MQ=255)
aTGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTAc > 2:2315976/1‑93 (MQ=255)
aTGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTAc < 1:130715/93‑1 (MQ=255)
aTGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTAc < 1:4439084/93‑1 (MQ=255)
gAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAg < 2:923318/93‑1 (MQ=255)
ccAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCa < 1:4425009/93‑1 (MQ=255)
gcagcagAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTa < 2:2964743/93‑1 (MQ=255)
gcagcagAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTa > 1:3104827/1‑93 (MQ=255)
gcagcagAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTa > 2:3579442/1‑93 (MQ=255)
cagcagAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTAc < 2:2100395/93‑1 (MQ=255)
cagcagAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTAc < 2:4228460/93‑1 (MQ=255)
agcagAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACt > 1:288900/1‑93 (MQ=255)
agcagAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACt < 2:380661/93‑1 (MQ=255)
agcagAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACt < 2:4363435/93‑1 (MQ=255)
gcagAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTg < 2:569491/93‑1 (MQ=255)
cagAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTgg > 1:1762782/1‑93 (MQ=255)
agAAGTTATCACTGGCTATCAACTCCATGAACTGGTAGGGCAGACTTGCTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGa < 2:1591939/93‑1 (MQ=255)
agAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGa < 1:2717103/93‑1 (MQ=255)
agAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGa < 1:4073601/93‑1 (MQ=255)
gAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGAt > 2:957420/1‑93 (MQ=255)
aaGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTTTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATa < 2:4455832/93‑1 (MQ=255)
aaGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATa > 2:3882258/1‑93 (MQ=255)
aaGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATa > 1:4587765/1‑93 (MQ=255)
aGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATAc > 1:3114695/1‑93 (MQ=255)
aGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATAc < 2:1084916/93‑1 (MQ=255)
gTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACg > 2:1142464/1‑93 (MQ=255)
ttATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGc > 2:2846930/1‑93 (MQ=255)
tCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTgg > 2:2776366/1‑93 (MQ=255)
tCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTgg < 2:102181/93‑1 (MQ=255)
tCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTgg > 1:4208596/1‑93 (MQ=255)
tGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACa > 2:2588974/1‑93 (MQ=255)
gCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATg > 1:2532489/1‑93 (MQ=255)
gCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATg > 2:2407162/1‑93 (MQ=255)
gCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATg < 1:3662103/93‑1 (MQ=255)
cTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATgg < 2:4046174/93‑1 (MQ=255)
cTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATgg < 2:315626/93‑1 (MQ=255)
aTCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCa < 2:3222222/93‑1 (MQ=255)
tCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCAc > 2:1727619/1‑93 (MQ=255)
aCGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGa > 2:1300616/1‑93 (MQ=255)
gCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAAc > 1:855600/1‑93 (MQ=255)
gCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAAc > 1:1459443/1‑93 (MQ=255)
cATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACAt > 1:898801/1‑93 (MQ=255)
aTGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACAtg > 1:694847/1‑93 (MQ=255)
tGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACAtgt < 1:3223494/93‑1 (MQ=255)
gAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACAtgtg < 2:3612916/93‑1 (MQ=255)
gAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACAtgtg < 1:3146274/93‑1 (MQ=255)
gAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACAtgtg < 1:341525/93‑1 (MQ=255)
aCTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGgc < 2:3107426/93‑1 (MQ=255)
aCTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGgc < 2:693496/93‑1 (MQ=255)
aCTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGgc > 1:1851590/1‑93 (MQ=255)
aCTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGgc < 1:1695192/93‑1 (MQ=255)
cTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGgcg > 1:1580721/1‑93 (MQ=255)
tGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGgcgc < 2:2982646/93‑1 (MQ=255)
gTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTg > 1:1940381/1‑93 (MQ=255)
aGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGga < 1:2922704/93‑1 (MQ=255)
gggCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGgag > 2:3915199/1‑93 (MQ=255)
gggCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGgag > 1:2731803/1‑93 (MQ=255)
cAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATc < 2:135118/93‑1 (MQ=255)
aGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCa < 1:2193764/93‑1 (MQ=255)
gCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAg < 1:305803/93‑1 (MQ=255)
cTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGtt > 2:3414508/1‑93 (MQ=255)
cTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGtt < 1:2861828/93‑1 (MQ=255)
cTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGtt > 2:2915866/1‑93 (MQ=255)
ttACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGGTCAGttt > 2:4218794/1‑93 (MQ=255)
ttACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGttt < 1:2008462/93‑1 (MQ=255)
ttACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGttt > 2:208294/1‑93 (MQ=255)
tACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGtttt > 2:3507211/1‑93 (MQ=255)
tACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGtttt > 1:4049657/1‑93 (MQ=255)
aCTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTc < 1:115116/93‑1 (MQ=255)
tCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCa > 1:471286/1‑93 (MQ=255)
ccATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAg < 1:61961/93‑1 (MQ=255)
ccATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAg < 1:1284166/93‑1 (MQ=255)
cATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAgg > 2:921531/1‑93 (MQ=255)
aTGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGt > 1:4295154/1‑93 (MQ=255)
tgttgtTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTc < 1:330598/93‑1 (MQ=255)
tgttgtTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTc < 1:3708847/93‑1 (MQ=255)
gttgttCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCg > 2:3855783/1‑93 (MQ=255)
gttgttCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCg > 2:1268786/1‑93 (MQ=255)
ttgttCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGt > 2:3318193/1‑93 (MQ=255)
ttgttCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGt > 2:1674368/1‑93 (MQ=255)
ttgttCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGt > 1:1791348/1‑93 (MQ=255)
ttgttCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGt < 2:644726/93‑1 (MQ=255)
gttCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGTGa < 1:2794011/93‑1 (MQ=255)
gttCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGCCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGCCGTgc > 1:389211/1‑92 (MQ=255)
|
GGTGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGTGAC > NC_000913/2318906‑2319085
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGGGTGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGTGACCGCA > NC_000913/2318904‑2319089
|
AGGGTGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAA > SRR4302535.1411386/1‑94 (MQ=60)
GGTGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACA > SRR4302535.2177669/1‑94 (MQ=60)
GGTGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACA < SRR4302535.1608336/94‑1 (MQ=60)
GTGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAA < SRR4302535.4085825/94‑1 (MQ=60)
TGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAAT > SRR4302535.2579098/1‑94 (MQ=60)
TGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAAT < SRR4302535.1846615/94‑1 (MQ=60)
ATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATAC > SRR4302535.409767/1‑94 (MQ=60)
ATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATAC < SRR4302535.4278691/94‑1 (MQ=60)
TGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACT < SRR4302535.3717340/94‑1 (MQ=60)
GTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTC < SRR4302535.4244329/94‑1 (MQ=60)
TAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCA < SRR4302535.3563232/94‑1 (MQ=60)
ACNCCCATGAACCCAGCAGCAGNAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGT < SRR4302535.3207859/94‑1 (MQ=60)
CCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTT > SRR4302535.1108346/1‑94 (MQ=60)
CCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTT > SRR4302535.294419/1‑94 (MQ=60)
ATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACA < SRR4302535.4469511/94‑1 (MQ=60)
ATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACA < SRR4302535.131632/94‑1 (MQ=60)
ATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACA < SRR4302535.2477660/94‑1 (MQ=60)
ACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCC > SRR4302535.2855272/1‑94 (MQ=60)
CCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCA > SRR4302535.2740058/1‑94 (MQ=60)
CCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAG < SRR4302535.4455318/94‑1 (MQ=60)
AGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTA > SRR4302535.3126444/1‑94 (MQ=60)
CAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACT > SRR4302535.290922/1‑94 (MQ=60)
GCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGG > SRR4302535.1775550/1‑94 (MQ=60)
AGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGAT < SRR4302535.4510018/94‑1 (MQ=60)
AGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGAT < SRR4302535.4101475/94‑1 (MQ=60)
AGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGAT < SRR4302535.25706/94‑1 (MQ=60)
AGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGAT < SRR4302535.2736512/94‑1 (MQ=60)
GAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATA > SRR4302535.4619004/1‑94 (MQ=60)
AAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATAC > SRR4302535.3136380/1‑94 (MQ=60)
ATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGG > SRR4302535.4237400/1‑94 (MQ=60)
ATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGG > SRR4302535.3101630/1‑94 (MQ=60)
CACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAA > SRR4302535.4709424/1‑94 (MQ=60)
TGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACAT < SRR4302535.1975687/94‑1 (MQ=60)
GGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGGACATG > SRR4302535.12041/1‑94 (MQ=60)
GGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATG > SRR4302535.2550735/1‑94 (MQ=60)
GCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGG < SRR4302535.3687459/94‑1 (MQ=60)
TATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCA < SRR4302535.2898688/94‑1 (MQ=60)
TCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACC < SRR4302535.893025/94‑1 (MQ=60)
CGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAAC > SRR4302535.861633/1‑94 (MQ=60)
CGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAAC > SRR4302535.1469899/1‑94 (MQ=60)
CGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAAC < SRR4302535.359260/94‑1 (MQ=60)
CCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACAT > SRR4302535.905170/1‑94 (MQ=60)
CCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACAT > SRR4302535.2087479/1‑94 (MQ=60)
CATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATG > SRR4302535.699722/1‑94 (MQ=60)
CATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATG > SRR4302535.69668/1‑94 (MQ=60)
CATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATG > SRR4302535.988960/1‑94 (MQ=60)
TGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTG < SRR4302535.3245838/94‑1 (MQ=60)
GAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGG < SRR4302535.343893/94‑1 (MQ=60)
GAACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGG < SRR4302535.3168152/94‑1 (MQ=60)
AACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGC < SRR4302535.1320779/94‑1 (MQ=60)
AACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGC > SRR4302535.1864930/1‑94 (MQ=60)
ACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCG > SRR4302535.1592132/1‑94 (MQ=60)
ACTGGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCG < SRR4302535.1707445/94‑1 (MQ=60)
GGTAGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTG > SRR4302535.1954360/1‑94 (MQ=60)
AGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAG < SRR4302535.3157480/94‑1 (MQ=60)
AGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAG > SRR4302535.2751305/1‑94 (MQ=60)
AGGGCAGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAG < SRR4302535.2943317/94‑1 (MQ=60)
AGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAG > SRR4302535.1773808/1‑94 (MQ=60)
AGCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAG < SRR4302535.2209397/94‑1 (MQ=60)
GCCTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGT < SRR4302535.307921/94‑1 (MQ=60)
CTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTT < SRR4302535.2882101/94‑1 (MQ=60)
CTTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTT < SRR4302535.4417298/94‑1 (MQ=60)
TTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTT > SRR4302535.4077383/1‑94 (MQ=60)
TTACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTT < SRR4302535.2022927/94‑1 (MQ=60)
ACTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCC < SRR4302535.115923/94‑1 (MQ=60)
CTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCA > SRR4302535.474583/1‑94 (MQ=60)
CTCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCA > SRR4302535.1525916/1‑94 (MQ=60)
TCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAG < SRR4302535.1670525/94‑1 (MQ=60)
TCCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAG < SRR4302535.3426029/94‑1 (MQ=60)
CCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGG < SRR4302535.62424/94‑1 (MQ=60)
CCATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGG < SRR4302535.1293318/94‑1 (MQ=60)
CATGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGT > SRR4302535.4324543/1‑94 (MQ=60)
TGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCG < SRR4302535.3734529/94‑1 (MQ=60)
TGTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCG < SRR4302535.332889/94‑1 (MQ=60)
GTTGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGT > SRR4302535.1804301/1‑94 (MQ=60)
TGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGTGA > SRR4302535.3988561/1‑94 (MQ=60)
TGTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGCCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGCCGTGC > SRR4302535.391918/1‑94 (MQ=60)
GTTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGTGAC < SRR4302535.2813891/94‑1 (MQ=60)
TTCAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGTGACC < SRR4302535.4103891/94‑1 (MQ=60)
CAACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGTGACCGC > SRR4302535.3029836/1‑94 (MQ=60)
AACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGTGACCGCA > SRR4302535.60673/1‑94 (MQ=60)
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AGGGTGATGTAACCACCATGAACCCAGCAGCAGAAGTTATCACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTCAGTTCTACAGTCCAGTACTGGATACGCTGGAACATGGCACCGAACATGTGGCGCTGGAGATCAGTTTTCCAGGTCGTGACCGCA > NC_000913/2318904‑2319089
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
