Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,943,196 |
T→C |
K223K (AAA→AAG) |
ygdL ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,943,196 | 0 | T | C | 100.0%
| 532.8
/ NA
| 167 | K223K (AAA→AAG) | ygdL | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (81/86); total (81/86) |
Only 100 of 171 total aligned reads displayed.
ACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCTTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGT > NC_000913/2943107‑2943284
|
aCCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTc < 2:4530425/93‑1 (MQ=255)
accaaacaaAACCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCa < 2:4486857/89‑1 (MQ=255)
cGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCAt > 2:3496566/1‑93 (MQ=255)
cGCAACAAACCCAAAGGTGGCGGACACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGCGGCCTTCAt > 2:4164475/1‑93 (MQ=255)
gCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATc > 2:512759/1‑93 (MQ=255)
gCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATc > 2:3690825/1‑93 (MQ=255)
gCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATc > 2:1246946/1‑93 (MQ=255)
gCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATc > 2:4077340/1‑93 (MQ=255)
aacaaACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGc > 1:2479143/1‑93 (MQ=255)
aaCCCAAAGGTGGCGGTCACCATCCTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGcacac > 2:1554079/1‑93 (MQ=255)
cccAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCacacac < 2:1069961/93‑1 (MQ=255)
cccAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCacacac < 1:2388495/93‑1 (MQ=255)
cccAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCacacac < 1:3751600/93‑1 (MQ=255)
ccAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACacc > 1:1287587/1‑93 (MQ=255)
aaGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACaccgta < 1:940009/93‑1 (MQ=255)
aaGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACaccgta < 2:2131348/93‑1 (MQ=255)
aaGGTGCCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACaccgta < 1:2302284/93‑1 (MQ=255)
aGGTGGCGGTCACCATCGTTGCCGCGCCTAATCCAGATGCACAAACCATCCGCTACGGCCCTTCTGCCGTGGCCTTCATCGCACATaccgtgc > 2:2481129/1‑91 (MQ=255)
tGGCGGTCACCATCGGTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACaccgtaccgt > 1:422019/1‑93 (MQ=255)
ggCGGTCCCCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTc < 1:983299/93‑1 (MQ=255)
ggCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACaccgtaccgac < 2:4616338/93‑3 (MQ=255)
gCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCt < 2:1121401/93‑1 (MQ=255)
cGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTg > 2:1866487/1‑93 (MQ=255)
cGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTg < 2:2302605/93‑1 (MQ=255)
gTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGAc < 2:3277138/93‑1 (MQ=255)
gTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGAc < 1:1223259/93‑1 (MQ=255)
gTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGAc > 1:2991542/1‑93 (MQ=255)
gTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGAc < 2:2268605/93‑1 (MQ=255)
tCACCATCGTTGCCGCGCCAAATGCAGATGCACAATCCATCCGCTTCGCCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACt > 1:2838120/1‑93 (MQ=255)
cACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTg < 2:3113185/93‑1 (MQ=255)
aCCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGc < 1:4429266/93‑1 (MQ=255)
aCCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGc < 1:78668/93‑1 (MQ=255)
aCCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGc > 2:3766766/1‑93 (MQ=255)
ccATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCg < 2:1959034/93‑1 (MQ=255)
ccATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCg > 1:1277517/1‑93 (MQ=255)
tCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGt > 2:4520496/1‑93 (MQ=255)
cGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTa > 2:3819138/1‑93 (MQ=255)
ttGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTaca < 2:3049737/93‑1 (MQ=255)
tGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTacac < 2:2324366/93‑1 (MQ=255)
gcgcCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGAATGCGGGTACACCAgc > 2:3965358/1‑93 (MQ=255)
gcCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAgcgt > 1:3368033/1‑92 (MQ=255)
gcCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAgcgc < 2:763658/93‑1 (MQ=255)
ccAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCt > 2:198417/1‑93 (MQ=255)
cAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCtt > 1:4314402/1‑93 (MQ=255)
aaaTCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACTCGCGCTTc > 1:1178434/1‑93 (MQ=255)
aaTCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCa < 2:1346885/93‑1 (MQ=255)
aaTCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCa < 1:1793237/93‑1 (MQ=255)
aTCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAg > 2:4259589/1‑93 (MQ=255)
tCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGt > 1:3950108/1‑93 (MQ=255)
ccAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTa > 2:2175657/1‑93 (MQ=255)
cAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAg < 1:683177/93‑1 (MQ=255)
cAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAg > 1:356036/1‑93 (MQ=255)
cAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAg < 1:1407590/93‑1 (MQ=255)
aGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGCAGa > 2:3799489/1‑93 (MQ=255)
tGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGaaaa < 1:3645571/93‑1 (MQ=255)
tGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGaaaa < 2:2900733/93‑1 (MQ=255)
tGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGaaaa < 1:3354910/93‑1 (MQ=255)
tGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGaaaa < 1:2440858/93‑1 (MQ=255)
cacaATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAaca < 1:3199396/93‑1 (MQ=255)
acaATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAacac > 1:3795348/1‑93 (MQ=255)
acaATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAacac > 2:2251149/1‑93 (MQ=255)
caATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACg < 2:2353831/93‑1 (MQ=255)
aaTCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGc > 2:1488384/1‑93 (MQ=255)
aaTCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGAACACCAGCGCTTCAGTAGAAAACACGc > 2:504155/1‑93 (MQ=255)
atccatccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCa > 1:1552357/1‑93 (MQ=255)
atccatccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCa > 1:827783/1‑93 (MQ=255)
atccatccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCa > 2:2782811/1‑93 (MQ=255)
tccatccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCaa < 1:2606563/93‑1 (MQ=255)
tccatccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCaa > 1:1757975/1‑93 (MQ=255)
tccatccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCaa < 2:1707568/93‑1 (MQ=255)
tccatccGCTTCGGCCCTTCGGCCTTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCaa < 2:4058777/93‑1 (MQ=255)
ccatgcTCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACTCGGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCaaa < 2:1928761/93‑2 (MQ=255)
ccatccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAAt < 1:1559972/93‑1 (MQ=255)
ccatccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAAt < 1:441985/93‑1 (MQ=255)
catccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATc < 1:535937/93‑1 (MQ=255)
catccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATc < 2:4292703/93‑1 (MQ=255)
catccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATc < 2:1623232/93‑1 (MQ=255)
cGCTTCGGCCCTTCTGCCGGGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACg < 2:2134627/93‑1 (MQ=255)
gCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGc < 1:4178717/93‑1 (MQ=255)
cTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGcc < 1:1926513/93‑1 (MQ=255)
ttCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCg < 1:420437/93‑1 (MQ=255)
ggCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGc > 2:2020416/1‑93 (MQ=255)
cccTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCtt > 1:3846987/1‑93 (MQ=255)
cccGTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCtt < 1:751219/93‑1 (MQ=255)
cTTCTGGCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAc > 2:2875702/1‑93 (MQ=255)
cTTCTGCCGTGGCCTTCATCGCACGCACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAc > 1:4050967/1‑93 (MQ=255)
cTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAc > 2:1785642/1‑93 (MQ=255)
ttCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAcc < 2:3886937/93‑1 (MQ=255)
ttCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAcc > 2:2222736/1‑93 (MQ=255)
tGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCttt < 2:3190799/93‑1 (MQ=255)
tGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCttt < 2:2584896/93‑1 (MQ=255)
tGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCttt > 1:575810/1‑93 (MQ=255)
gCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTa < 2:4246993/93‑1 (MQ=255)
gCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTa < 1:4520481/93‑1 (MQ=255)
ccGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTAc > 2:2494475/1‑93 (MQ=255)
tGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGt > 2:3380844/1‑93 (MQ=255)
tGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGt < 1:1705289/93‑1 (MQ=255)
tGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGt < 1:1028768/93‑1 (MQ=255)
tGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGGACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGt > 1:3954782/1‑93 (MQ=255)
ggCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAgc > 2:526900/1‑46 (MQ=255)
|
ACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCTTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGT > NC_000913/2943107‑2943284
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAAACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCTTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTT > NC_000913/2943103‑2943287
|
AGAAACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCC > SRR4302535.3710591/1‑94 (MQ=60)
GAAACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCT < SRR4302535.4374984/94‑1 (MQ=60)
AAACCCCAACAAACCCAAAGGGGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTT < SRR4302535.3948325/94‑1 (MQ=60)
CGCAACAAACCCAAAGGTGTCGGTCACCATCGTTGTCGCGCCAAATCCAGATGCACAATCCATCCGATTCGGCCCTTCTGCCGTGGCCTTCATC > SRR4302535.1550122/1‑94 (MQ=60)
CAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGC > SRR4302535.2497024/1‑94 (MQ=60)
AACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCA > SRR4302535.2828535/1‑94 (MQ=60)
ACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCAC < SRR4302535.1412962/94‑1 (MQ=60)
AAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACAC < SRR4302535.2459998/94‑1 (MQ=60)
CCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACC < SRR4302535.2405665/94‑1 (MQ=60)
CCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACC > SRR4302535.4027959/1‑94 (MQ=60)
CCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACC > SRR4302535.1296764/1‑94 (MQ=60)
CCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACC < SRR4302535.3777566/94‑1 (MQ=60)
AAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTAC < SRR4302535.946665/94‑1 (MQ=60)
AAGGTGCCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTAC < SRR4302535.2318757/94‑1 (MQ=60)
AGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACC > SRR4302535.3746772/1‑94 (MQ=60)
AGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACC < SRR4302535.4149629/94‑1 (MQ=60)
GTGGCGGTCACCATCGGTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGT > SRR4302535.424965/1‑94 (MQ=60)
GGCGGTCCCCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCT < SRR4302535.990283/94‑1 (MQ=60)
GCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTG < SRR4302535.929134/94‑1 (MQ=60)
GGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGAC > SRR4302535.3012518/1‑94 (MQ=60)
GGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGAC > SRR4302535.4282530/1‑94 (MQ=60)
GTCACCATCGTTGCCGCGCCAAATGCAGATGCACAATCCATCCGCTTCGCCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACT > SRR4302535.2858256/1‑94 (MQ=60)
GTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACT < SRR4302535.4345428/94‑1 (MQ=60)
GTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACT < SRR4302535.1232013/94‑1 (MQ=60)
ACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCG < SRR4302535.4459611/94‑1 (MQ=60)
ACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCG < SRR4302535.79233/94‑1 (MQ=60)
ACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCG > SRR4302535.1286642/1‑94 (MQ=60)
ACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCG > SRR4302535.1244709/1‑94 (MQ=60)
CCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGG < SRR4302535.3448375/94‑1 (MQ=60)
CATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGG < SRR4302535.789457/94‑1 (MQ=60)
ATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGT < SRR4302535.741490/94‑1 (MQ=60)
TGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACC < SRR4302535.1739458/94‑1 (MQ=60)
GCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCA < SRR4302535.2284094/94‑1 (MQ=60)
CGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGC < SRR4302535.2562889/94‑1 (MQ=60)
CGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGT > SRR4302535.3391468/1‑94 (MQ=60)
CCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTT > SRR4302535.4343916/1‑94 (MQ=60)
CAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACTCGCGCTTC > SRR4302535.1186839/1‑94 (MQ=60)
AAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCA > SRR4302535.1793227/1‑94 (MQ=60)
AATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAG < SRR4302535.1806202/94‑1 (MQ=60)
ATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGT > SRR4302535.3977076/1‑94 (MQ=60)
CCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAG > SRR4302535.358494/1‑94 (MQ=60)
CCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAG < SRR4302535.385879/94‑1 (MQ=60)
CAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGA < SRR4302535.1417647/94‑1 (MQ=60)
CAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGA < SRR4302535.687960/94‑1 (MQ=60)
TGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAAC < SRR4302535.3378271/94‑1 (MQ=60)
TGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAAC < SRR4302535.2458442/94‑1 (MQ=60)
TGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAAC < SRR4302535.3670817/94‑1 (MQ=60)
CACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACAC > SRR4302535.3821510/1‑94 (MQ=60)
CACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACAC < SRR4302535.3221544/94‑1 (MQ=60)
AATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCA > SRR4302535.1563540/1‑94 (MQ=60)
AATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCA > SRR4302535.833577/1‑94 (MQ=60)
AATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGGACACCAGCGCTTCAGTAGAAAACACGCA > SRR4302535.3144458/1‑94 (MQ=60)
ATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAA > SRR4302535.1770682/1‑94 (MQ=60)
TCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAAT < SRR4302535.2625268/94‑1 (MQ=60)
TCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAAT < SRR4302535.160763/94‑1 (MQ=60)
CCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATC < SRR4302535.1571214/94‑1 (MQ=60)
CCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATC < SRR4302535.445080/94‑1 (MQ=60)
CCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATC > SRR4302535.3274262/1‑94 (MQ=60)
CCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATC < SRR4302535.3628116/94‑1 (MQ=60)
CATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCC < SRR4302535.539680/94‑1 (MQ=60)
CATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCC > SRR4302535.421103/1‑94 (MQ=60)
GCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCC < SRR4302535.4207320/94‑1 (MQ=60)
CTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCG < SRR4302535.1940397/94‑1 (MQ=60)
TTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGA < SRR4302535.423375/94‑1 (MQ=60)
GCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTT > SRR4302535.3878565/1‑94 (MQ=60)
GCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTT > SRR4302535.3873471/1‑94 (MQ=60)
CCCGTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTA < SRR4302535.756511/94‑1 (MQ=60)
CCTTCTGCCGTGGCCTTCATCGCACGCACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAC > SRR4302535.4078701/1‑94 (MQ=60)
CCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAC < SRR4302535.4516163/94‑1 (MQ=60)
CCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAC > SRR4302535.1418741/1‑94 (MQ=60)
CTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACC > SRR4302535.236785/1‑94 (MQ=60)
CTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACC > SRR4302535.1225138/1‑94 (MQ=60)
TCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTT > SRR4302535.96407/1‑94 (MQ=60)
CTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTT > SRR4302535.579853/1‑94 (MQ=60)
GCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTAC < SRR4302535.4551463/94‑1 (MQ=60)
CGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTG > SRR4302535.667681/1‑94 (MQ=60)
GTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGGACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGT > SRR4302535.3981779/1‑94 (MQ=60)
TGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTT < SRR4302535.1717616/94‑1 (MQ=60)
TGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTT < SRR4302535.1036071/94‑1 (MQ=60)
GCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTT < SRR4302535.898971/94‑1 (MQ=60)
GCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTT < SRR4302535.2667327/94‑1 (MQ=60)
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AGAAACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCTTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTT > NC_000913/2943103‑2943287
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
