Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,943,196 |
T→C |
K223K (AAA→AAG) |
ygdL ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,943,196 | 0 | T | C | 99.7%
| 902.1
/ ‑5.3
| 284 | K223K (AAA→AAG) | ygdL | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (141/142); total (141/143) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.25e-01 |
Only 100 of 293 total aligned reads displayed.
AACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCTTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTT > NC_000913/2943106‑2943285
|
aaCCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCctt < 2:3874617/93‑1 (MQ=255)
aaCCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCctt < 1:6266913/93‑1 (MQ=255)
aCCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTc > 2:2508665/1‑93 (MQ=255)
cGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCAt > 1:4970514/1‑93 (MQ=255)
cGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCAt < 1:7328433/93‑1 (MQ=255)
cGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCAt < 1:2808404/93‑1 (MQ=255)
gCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATc > 2:5741811/1‑93 (MQ=255)
gCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATc > 1:5621900/1‑93 (MQ=255)
gCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATc < 2:4556875/93‑1 (MQ=255)
acaaACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGca > 1:2013475/1‑93 (MQ=255)
caaACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGcac > 1:6048341/1‑93 (MQ=255)
caaACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGcac < 1:7714384/93‑1 (MQ=255)
aaCCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGcacac > 2:2372302/1‑93 (MQ=255)
aaCCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGcacac < 1:7068123/93‑1 (MQ=255)
aCCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGcacaca < 2:7870895/93‑1 (MQ=255)
cccAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCacacac < 2:6642245/93‑1 (MQ=255)
cccAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCacacac < 2:3135624/93‑1 (MQ=255)
aaaGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACaccgt > 1:1093200/1‑93 (MQ=255)
aaaGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACaccgt > 1:2247530/1‑93 (MQ=255)
aGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACaccgtac < 2:4935983/93‑1 (MQ=255)
gTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACaccgtaccg > 1:3872564/1‑93 (MQ=255)
gTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACaccgtaccg < 1:5348775/93‑1 (MQ=255)
tGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACaccgtaccgt > 1:6557028/1‑93 (MQ=255)
gCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCt < 2:593700/93‑1 (MQ=255)
ggTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGa > 1:6930523/1‑93 (MQ=255)
ggTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGa > 2:7719359/1‑93 (MQ=255)
ggTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGa < 2:4615929/93‑1 (MQ=255)
ggTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGa < 1:2874584/93‑1 (MQ=255)
ggTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGa < 2:6340792/93‑1 (MQ=255)
tCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACt > 1:6401039/1‑93 (MQ=255)
ccATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCg < 1:4733595/93‑1 (MQ=255)
cATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCgg < 1:764865/93‑1 (MQ=255)
aTCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCggg > 2:1988206/1‑93 (MQ=255)
tCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGt > 2:2164607/1‑93 (MQ=255)
cGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTa > 2:1542836/1‑93 (MQ=255)
cGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTa < 2:442196/93‑1 (MQ=255)
gTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGTCCTTCATCGCATACACCGTATCGTCTGACTGCGGGGac > 2:7036418/1‑93 (MQ=255)
gTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTac > 1:2503509/1‑93 (MQ=255)
ttGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTaca > 1:3237766/1‑93 (MQ=255)
ttGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTaca > 1:4215378/1‑93 (MQ=255)
gCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACAcc > 2:5221046/1‑93 (MQ=255)
ccGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCa > 1:556941/1‑93 (MQ=255)
gcgcCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAgc > 2:3418048/1‑93 (MQ=255)
ccAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGCACACCAGCGCt > 1:3435669/1‑93 (MQ=255)
cAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCtt < 1:6216582/93‑1 (MQ=255)
cAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCtt > 2:2054188/1‑93 (MQ=255)
aaaTCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTc > 2:11005/1‑93 (MQ=255)
aaTCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCa < 2:7681224/93‑1 (MQ=255)
aaTCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCa < 2:206306/93‑1 (MQ=255)
tCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACCCACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGt < 2:6988164/93‑1 (MQ=255)
tCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGt > 2:2248241/1‑93 (MQ=255)
ccAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTa < 1:5059991/93‑1 (MQ=255)
ccAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCACTa < 2:4153205/93‑1 (MQ=255)
cAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAg < 2:7468880/93‑1 (MQ=255)
gATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGaa > 2:1730180/1‑93 (MQ=255)
aTGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGaaa < 1:4000305/93‑1 (MQ=255)
tGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGaaaa < 2:1189964/93‑1 (MQ=255)
tGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGaaaa < 1:6655073/93‑1 (MQ=255)
gCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAac < 1:4528814/93‑1 (MQ=255)
gCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAac < 2:5410124/93‑1 (MQ=255)
cacaATCCATCCGCTTCGGCCCTTCTGCGGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAaca < 1:4349601/93‑1 (MQ=255)
cacaATCCATCCGCTTCGGCCCTTCTGCCGTGTCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAaca < 2:7255220/93‑1 (MQ=255)
cacaATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAaca < 1:3024359/93‑1 (MQ=255)
cacaATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAaca < 2:6169468/93‑1 (MQ=255)
cacaATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAaca < 1:6575620/93‑1 (MQ=255)
cacaATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAaca > 2:722991/1‑93 (MQ=255)
acaATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAacac < 1:5114435/93‑1 (MQ=255)
caATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACg < 2:2565204/93‑1 (MQ=255)
tccatccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGcca > 2:4651737/1‑91 (MQ=255)
tccatccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCaa < 2:3996477/93‑1 (MQ=255)
catccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATc < 2:2430068/93‑1 (MQ=255)
ctccGCTTCGGCCCTTCTGCCGTGGCCTTCAGCGCACACACCGTACCGTCTGACTCCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATcc < 2:2655521/92‑1 (MQ=255)
atccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATcc > 1:1675645/1‑93 (MQ=255)
tccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATccc > 2:5692767/1‑92 (MQ=255)
tccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCa < 1:7840088/93‑1 (MQ=255)
tccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCa < 1:1293654/93‑1 (MQ=255)
tccGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCa < 1:6841257/93‑1 (MQ=255)
cctcTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCAc < 1:2345642/90‑1 (MQ=255)
cGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACg > 1:5798595/1‑93 (MQ=255)
cTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGcc > 1:1129006/1‑93 (MQ=255)
ttCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCg > 2:5844169/1‑93 (MQ=255)
ggCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGc > 1:4444388/1‑93 (MQ=255)
gCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCt < 2:2871657/93‑1 (MQ=255)
gCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCt < 2:2793597/93‑1 (MQ=255)
cccTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCtt > 1:3698457/1‑93 (MQ=255)
ctttCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTa < 2:430363/91‑1 (MQ=255)
cTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAc < 1:1875487/93‑1 (MQ=255)
cTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAc > 1:1626871/1‑93 (MQ=255)
ttCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCTACGCCGAGCTTAcc > 1:7188785/1‑93 (MQ=255)
ttCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCa > 2:560658/1‑80 (MQ=255)
ttCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAcc > 1:4943692/1‑93 (MQ=255)
cTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCtt < 2:4718558/93‑1 (MQ=255)
cTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCtt < 2:5115798/93‑1 (MQ=255)
tGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCttt > 1:3478604/1‑93 (MQ=255)
ccGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCTGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTAc < 1:984572/93‑1 (MQ=255)
ccGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTAc < 1:5706557/93‑1 (MQ=255)
cGTGGCCTTCATCGCCCACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTagt < 1:2465510/93‑3 (MQ=255)
gTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTg > 2:2329601/1‑93 (MQ=255)
tGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGt < 1:156012/93‑1 (MQ=255)
gggCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGt < 1:2677601/92‑1 (MQ=255)
|
AACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCTTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTT > NC_000913/2943106‑2943285
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGAAACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCTTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTC > NC_000913/2943103‑2943289
|
AGAAACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCCAATCCAGATGCACAATCCATCCGCTTCGCCCCTTCTGCCGTGGCC > SRR4302543.6582465/1‑94 (MQ=60)
AGAAACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCC < SRR4302543.1388868/94‑1 (MQ=60)
AGAAACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCC < SRR4302543.6181967/94‑1 (MQ=60)
AAACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTT < SRR4302543.3207971/94‑1 (MQ=60)
AACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTC < SRR4302543.6326004/94‑1 (MQ=60)
ACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCA < SRR4302543.6473163/94‑1 (MQ=60)
ACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCA > SRR4302543.1684351/1‑94 (MQ=60)
CCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCAT > SRR4302543.5015749/1‑94 (MQ=60)
CCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCAT < SRR4302543.1505195/94‑1 (MQ=60)
CGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATC < SRR4302543.2834110/94‑1 (MQ=60)
CGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATC > SRR4302543.5673134/1‑94 (MQ=60)
CGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATC > SRR4302543.7609104/1‑94 (MQ=60)
CGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATC > SRR4302543.163131/1‑94 (MQ=60)
CGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATC < SRR4302543.7398976/94‑1 (MQ=60)
GCAACAACCCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCG < SRR4302543.129079/94‑1 (MQ=60)
GCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCG > SRR4302543.3412932/1‑94 (MQ=60)
AACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGGTTCGGCCCTTCTGCCGTGGCCTTCATCGCC > SRR4302543.6619592/1‑94 (MQ=60)
AACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCC > SRR4302543.6619591/1‑94 (MQ=60)
AACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCA > SRR4302543.6947637/1‑94 (MQ=60)
AACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCA < SRR4302543.2781098/94‑1 (MQ=60)
AACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCA > SRR4302543.2031573/1‑94 (MQ=60)
AACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCA > SRR4302543.7856753/1‑94 (MQ=60)
ACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCAC > SRR4302543.6105592/1‑94 (MQ=60)
CAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACA < SRR4302543.7787347/94‑1 (MQ=60)
AACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACA < SRR4302543.7136751/94‑1 (MQ=60)
ACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACAC > SRR4302543.7244820/1‑94 (MQ=60)
CCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACC < SRR4302543.3691925/94‑1 (MQ=60)
CAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGT > SRR4302543.2267933/1‑94 (MQ=60)
CAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGT > SRR4302543.1103031/1‑94 (MQ=60)
CAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGT > SRR4302543.2267934/1‑94 (MQ=60)
CAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGT > SRR4302543.1103032/1‑94 (MQ=60)
AAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTA > SRR4302543.439326/1‑94 (MQ=60)
AGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACC < SRR4302543.3478733/94‑1 (MQ=60)
AGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACC < SRR4302543.5792964/94‑1 (MQ=60)
AGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACC > SRR4302543.1538852/1‑94 (MQ=60)
GGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCG < SRR4302543.3032256/94‑1 (MQ=60)
GGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCG > SRR4302543.3906756/1‑94 (MQ=60)
GGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCG > SRR4302543.4873637/1‑94 (MQ=60)
GGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCGGCCGTGGCCTTCATCGCACACACCGTACCG > SRR4302543.7334288/1‑94 (MQ=60)
GTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGT < SRR4302543.5397179/94‑1 (MQ=60)
GTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGT > SRR4302543.6618725/1‑94 (MQ=60)
CGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGA > SRR4302543.6995713/1‑94 (MQ=60)
GGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGAC < SRR4302543.825618/94‑1 (MQ=60)
GGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGAC < SRR4302543.2747745/94‑1 (MQ=60)
GGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGAC < SRR4302543.2900753/94‑1 (MQ=60)
GGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGAC < SRR4302543.2501522/94‑1 (MQ=60)
GTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACT > SRR4302543.6461304/1‑94 (MQ=60)
TCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTG < SRR4302543.4268931/94‑1 (MQ=60)
CACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGC < SRR4302543.5683143/94‑1 (MQ=60)
CACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGCACCGTCTGACTGC > SRR4302543.7837061/1‑94 (MQ=60)
ACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCG > SRR4302543.4498663/1‑94 (MQ=60)
CCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGG < SRR4302543.4776857/94‑1 (MQ=60)
CATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGG < SRR4302543.771596/94‑1 (MQ=60)
CATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGG < SRR4302543.771595/94‑1 (MQ=60)
ATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGT < SRR4302543.6125567/94‑1 (MQ=60)
ATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGT > SRR4302543.1744044/1‑94 (MQ=60)
CGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTAC < SRR4302543.5000286/94‑1 (MQ=60)
CGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTAC < SRR4302543.5674056/94‑1 (MQ=60)
CGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTAC > SRR4302543.2526236/1‑94 (MQ=60)
GTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACA > SRR4302543.4253601/1‑94 (MQ=60)
GTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACA > SRR4302543.3267054/1‑94 (MQ=60)
GTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACA > SRR4302543.817436/1‑94 (MQ=60)
GTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACA > SRR4302543.5632319/1‑94 (MQ=60)
GTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGAGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACA > SRR4302543.7440564/1‑94 (MQ=60)
GCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCA < SRR4302543.6681404/94‑1 (MQ=60)
GCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCA < SRR4302543.4148503/94‑1 (MQ=60)
GCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCA > SRR4302543.562050/1‑94 (MQ=60)
CGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGC < SRR4302543.5156699/94‑1 (MQ=60)
GCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGCACACCAGCGCT > SRR4302543.3466421/1‑94 (MQ=60)
CCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCAGTGGCTTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTT < SRR4302543.261717/94‑1 (MQ=60)
CAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTC > SRR4302543.4053609/1‑94 (MQ=60)
CAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTC < SRR4302543.6275269/94‑1 (MQ=60)
AATCCAGATGCACAATCCATCCGCTTTGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAG < SRR4302543.2619472/94‑1 (MQ=60)
AATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAG > SRR4302543.2156907/1‑94 (MQ=60)
AATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAG < SRR4302543.4752754/94‑1 (MQ=60)
AATCCAGACGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAG < SRR4302543.4327545/94‑1 (MQ=60)
ATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGT < SRR4302543.1835293/94‑1 (MQ=60)
TCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTA < SRR4302543.6362059/94‑1 (MQ=60)
CCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAG > SRR4302543.3854126/1‑94 (MQ=60)
CCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAG < SRR4302543.1278903/94‑1 (MQ=60)
CCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAG < SRR4302543.5105970/94‑1 (MQ=60)
CAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGA > SRR4302543.166885/1‑94 (MQ=60)
CAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGA < SRR4302543.3835806/94‑1 (MQ=60)
CAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGA > SRR4302543.6574686/1‑94 (MQ=60)
AGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAA > SRR4302543.5039150/1‑94 (MQ=60)
GATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAA < SRR4302543.3056197/94‑1 (MQ=60)
ATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAA < SRR4302543.4035984/94‑1 (MQ=60)
TGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAAC < SRR4302543.6717903/94‑1 (MQ=60)
GCACACTCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACGCCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACA < SRR4302543.2841933/94‑1 (MQ=60)
GCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACA < SRR4302543.5926010/94‑1 (MQ=60)
GCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACA < SRR4302543.4570033/94‑1 (MQ=60)
CACAATCCATCCGCTTCGGCCCTTCTGCGGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACAC < SRR4302543.4389024/94‑1 (MQ=60)
CACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACAC < SRR4302543.6637541/94‑1 (MQ=60)
CACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACAC < SRR4302543.3051692/94‑1 (MQ=60)
CCAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCAACGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACG < SRR4302543.1898381/94‑1 (MQ=60)
ACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACG < SRR4302543.5160704/94‑1 (MQ=60)
ACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACG < SRR4302543.4512358/94‑1 (MQ=60)
ACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACC > SRR4302543.1580463/1‑94 (MQ=60)
CAATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGC > SRR4302543.2295485/1‑94 (MQ=60)
ATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGGAA > SRR4302543.1953338/1‑94 (MQ=60)
ATCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAA > SRR4302543.6100627/1‑94 (MQ=60)
TCCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAAT > SRR4302543.4406093/1‑94 (MQ=60)
CCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATC < SRR4302543.582279/94‑1 (MQ=60)
CCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATC < SRR4302543.2898776/94‑1 (MQ=60)
CCATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATC > SRR4302543.394708/1‑94 (MQ=60)
CATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCC > SRR4302543.5609317/1‑94 (MQ=60)
CATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCC > SRR4302543.5609316/1‑94 (MQ=60)
CATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCC > SRR4302543.1690663/1‑94 (MQ=60)
ATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCA < SRR4302543.3973430/94‑1 (MQ=60)
ATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCA > SRR4302543.7763313/1‑94 (MQ=60)
ATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCA > SRR4302543.5125875/1‑94 (MQ=60)
ATCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCA > SRR4302543.6457311/1‑94 (MQ=60)
gatctccactctCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCAC < SRR4302543.565796/82‑1 (MQ=60)
TCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCAC < SRR4302543.7913974/94‑1 (MQ=60)
TCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCAC < SRR4302543.1305172/94‑1 (MQ=60)
TCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCAC < SRR4302543.6905828/94‑1 (MQ=60)
TCCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCAC < SRR4302543.6905829/94‑1 (MQ=60)
CCTCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACG < SRR4302543.2366917/94‑1 (MQ=60)
CCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACG > SRR4302543.5851339/1‑94 (MQ=60)
CCGCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACC > SRR4302543.239425/1‑94 (MQ=60)
GCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCC > SRR4302543.1139253/1‑94 (MQ=60)
GCTTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCC > SRR4302543.5385065/1‑94 (MQ=60)
TTCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGA > SRR4302543.734293/1‑94 (MQ=60)
TCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAG < SRR4302543.7058781/94‑1 (MQ=60)
TCGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAG < SRR4302543.6182166/94‑1 (MQ=60)
CGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGC > SRR4302543.7128003/1‑94 (MQ=60)
CGGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGC > SRR4302543.4484638/1‑94 (MQ=60)
GGCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCT > SRR4302543.4976720/1‑94 (MQ=60)
GCCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTT > SRR4302543.3730972/1‑94 (MQ=60)
CCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTA < SRR4302543.4775242/94‑1 (MQ=60)
CCCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTA > SRR4302543.6310543/1‑94 (MQ=60)
CCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAC < SRR4302543.5000309/94‑1 (MQ=60)
CCTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTAC > SRR4302543.1641363/1‑94 (MQ=60)
CTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCTACGCCGAGCTTACC > SRR4302543.7258516/1‑94 (MQ=60)
CTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACC < SRR4302543.1892337/94‑1 (MQ=60)
CTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACC > SRR4302543.4988708/1‑94 (MQ=60)
CTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACC > SRR4302543.3483770/1‑94 (MQ=60)
CTTCTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGCACACCAGCGCTTCAGTAGAACAGACGCACTCACCGCCGAGCTTACC > SRR4302543.7034959/1‑94 (MQ=60)
CTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTT > SRR4302543.3509762/1‑94 (MQ=60)
CTGCCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTT > SRR4302543.3352921/1‑94 (MQ=60)
CCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCTGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACT < SRR4302543.993267/94‑1 (MQ=60)
CCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACT > SRR4302543.7216449/1‑94 (MQ=60)
CCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACT < SRR4302543.5758605/94‑1 (MQ=60)
CCGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACT < SRR4302543.6658773/94‑1 (MQ=60)
CGTGGCCTTCATCGCCCACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTAGTG < SRR4302543.2487755/94‑1 (MQ=60)
CGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTG > SRR4302543.6874039/1‑94 (MQ=60)
CGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTG < SRR4302543.2487756/94‑1 (MQ=60)
CGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTG > SRR4302543.2404989/1‑94 (MQ=60)
CGTGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTG < SRR4302543.3562984/94‑1 (MQ=60)
TGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTT > SRR4302543.2289499/1‑94 (MQ=60)
TGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTT < SRR4302543.157354/94‑1 (MQ=60)
TGGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTT < SRR4302543.3132879/94‑1 (MQ=60)
GGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTT > SRR4302543.1818208/1‑94 (MQ=60)
GGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTT < SRR4302543.6303019/94‑1 (MQ=60)
GGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTT < SRR4302543.5288468/94‑1 (MQ=60)
GGCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTT > SRR4302543.2606582/1‑94 (MQ=60)
GCCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACCCGCAATCCACGCCGAGCTTACCTTTACTGTTTT > SRR4302543.7681078/1‑94 (MQ=60)
CCTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTT < SRR4302543.5776125/94‑1 (MQ=60)
CTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTC > SRR4302543.6124511/1‑94 (MQ=60)
CTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTC > SRR4302543.2563014/1‑94 (MQ=60)
CTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTC > SRR4302543.6474285/1‑94 (MQ=60)
|
AGAAACCGCAACAAACCCAAAGGTGGCGGTCACCATCGTTGCCGCGCCAAATCCAGATGCACAATCCATCCGCTTCGGCCCTTCTGCCGTGGCTTTCATCGCACACACCGTACCGTCTGACTGCGGGTACACCAGCGCTTCAGTAGAAAACACGCAATCCACGCCGAGCTTACCTTTACTGTTTTTC > NC_000913/2943103‑2943289
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
