Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,971,616	A→G	L90P (CTG→CCG)	ygeD ←	putative resistance protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,971,616	0	A	G	100.0%	486.6 / NA	155	L90P (CTG→CCG)	ygeD	putative resistance protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (80/75); total (80/75)

Only 100 of 165 total aligned reads displayed.

TCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCAGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCA  >  NC_000913/2971527‑2971705

tCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCt                                                                                        <  1:4207940/93‑1 (MQ=255)

 cGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCtt                                                                                       >  1:2925644/1‑93 (MQ=255)

   ccGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCa                                                                                     <  1:262460/93‑1 (MQ=255)

   ccGGTGAATAGCCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCa                                                                                     <  2:2919173/93‑1 (MQ=255)

   ccGGTAAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCa                                                                                     <  2:4219292/93‑1 (MQ=255)

    cGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAg                                                                                    >  2:1633490/1‑93 (MQ=255)

    cGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAg                                                                                    >  1:1706203/1‑93 (MQ=255)

       tGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGcc                                                                                 >  2:1884380/1‑93 (MQ=255)

       tGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGcc                                                                                 <  1:840137/93‑1 (MQ=255)

        gAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCCGGCCg                                                                                >  2:374935/1‑93 (MQ=255)

          aTAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGtt                                                                              <  1:659011/93‑1 (MQ=255)

          aTAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGtt                                                                              <  2:4148572/93‑1 (MQ=255)

          aTAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGtt                                                                              >  2:4251904/1‑93 (MQ=255)

           tAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTg                                                                             >  2:2154408/1‑93 (MQ=255)

               cTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGCTGGcga                                                                         >  1:1411282/1‑91 (MQ=255)

                tGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCaaa                                                                        >  2:3989290/1‑93 (MQ=255)

                tGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCaaa                                                                        <  1:3064854/93‑1 (MQ=255)

                 gcagcaCCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAAc                                                                       <  2:1169588/93‑1 (MQ=255)

                    gcaCCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAAcatc                                                                    >  2:3589075/1‑93 (MQ=255)

                    gcaCCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAAcatc                                                                    <  1:1512509/93‑1 (MQ=255)

                      aCCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAAcatcat                                                                  >  2:3635914/1‑93 (MQ=255)

                       ccAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCCGGCCGTTGGGAAACatcatc                                                                 >  1:1959404/1‑93 (MQ=255)

                       ccAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACatcatc                                                                 >  1:3735378/1‑93 (MQ=255)

                       ccAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACatcatc                                                                 <  1:4667594/93‑1 (MQ=255)

                          acacCCACCAGCGTATAGCTGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCAcc                                                              <  2:4036068/93‑1 (MQ=255)

                          acacCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCAcc                                                              >  2:3515511/1‑93 (MQ=255)

                          acacCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCAcc                                                              <  2:3693559/93‑1 (MQ=255)

                           cacccaccAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCAccc                                                             <  2:709505/93‑1 (MQ=255)

                           cacccaccAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCAccc                                                             >  2:998783/1‑93 (MQ=255)

                            acccaccAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACCTCATCACCCg                                                            >  2:1205334/1‑93 (MQ=255)

                             cccaccAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCgg                                                           >  1:1210233/1‑93 (MQ=255)

                             cccaccAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCgg                                                           <  1:4349989/93‑1 (MQ=255)

                              ccaccaGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGc                                                          <  1:375913/93‑1 (MQ=255)

                                 ccaGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCtt                                                       <  1:3650854/93‑1 (MQ=255)

                                 ccaGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCtt                                                       <  2:2214188/93‑1 (MQ=255)

                                  caGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCttt                                                      <  1:3709586/93‑1 (MQ=255)

                                  caGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCttt                                                      <  1:2373846/93‑1 (MQ=255)

                                  caGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCttt                                                      >  1:4607034/1‑93 (MQ=255)

                                    gCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTgg                                                    >  1:1085917/1‑93 (MQ=255)

                                    gCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTgg                                                    <  2:2335376/93‑1 (MQ=255)

                                     cGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGc                                                   <  2:1207202/93‑1 (MQ=255)

                                       tataGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGa                                                 >  2:3625355/1‑93 (MQ=255)

                                       tataGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGa                                                 >  1:886140/1‑93 (MQ=255)

                                        ataGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGaa                                                <  1:205477/93‑1 (MQ=255)

                                          aGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGc                                              <  1:1005054/93‑1 (MQ=255)

                                           gCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCt                                             <  2:2116979/93‑1 (MQ=255)

                                            ccGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTa                                            <  2:2852611/93‑1 (MQ=255)

                                              gagaAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATc                                          <  2:386611/93‑1 (MQ=255)

                                              gagaAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATc                                          >  2:3320268/1‑93 (MQ=255)

                                              gagaAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATc                                          <  2:1453166/93‑1 (MQ=255)

                                               agaAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATcc                                         <  1:3995766/93‑1 (MQ=255)

                                               agaAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATcc                                         <  1:3027396/93‑1 (MQ=255)

                                                  aaCGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCcccc                                      >  1:2851827/1‑93 (MQ=255)

                                                  aaCGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGcc                                      <  1:985018/93‑1 (MQ=255)

                                                     ggATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCAcc                                   <  2:4483390/93‑1 (MQ=255)

                                                     ggATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCAcc                                   >  2:153738/1‑93 (MQ=255)

                                                      gATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTTGCGAAGCTATCCGCCCCCt                                  >  2:1969014/1‑93 (MQ=255)

                                                      gATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCATCt                                  >  2:4482279/1‑93 (MQ=255)

                                                      gATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCt                                  >  1:1761951/1‑93 (MQ=255)

                                                      gATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCt                                  >  2:2399496/1‑93 (MQ=255)

                                                      gATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCt                                  >  2:678817/1‑93 (MQ=255)

                                                       aTTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTg                                 >  1:237623/1‑93 (MQ=255)

                                                          gATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACACGGCCTTTGGCGAAGCTATCCGCCACCTGccc                              >  2:2027951/1‑93 (MQ=255)

                                                          aaTACCAAAGCAGATACTGTCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGccc                              <  2:2973466/92‑1 (MQ=255)

                                                           aTACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCg                             >  1:4441725/1‑93 (MQ=255)

                                                           aTACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCg                             >  1:3518637/1‑93 (MQ=255)

                                                            tACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGa                            >  1:3219412/1‑93 (MQ=255)

                                                              ccAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACa                          <  1:303163/93‑1 (MQ=255)

                                                               cAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACac                         >  1:4066196/1‑92 (MQ=255)

                                                               cAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACaa                         <  2:4415677/93‑1 (MQ=255)

                                                               cAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACaa                         >  2:2377044/1‑93 (MQ=255)

                                                                aaaGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACaaa                        <  1:2474631/93‑1 (MQ=255)

                                                                  aGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACg                      >  1:2153970/1‑93 (MQ=255)

                                                                     aGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGgcg                   <  2:792355/93‑1 (MQ=255)

                                                                      gATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGgcgc                  >  2:1832657/1‑93 (MQ=255)

                                                                      gATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGgcgc                  >  2:658009/1‑93 (MQ=255)

                                                                        tACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCaa                >  1:11668/1‑93 (MQ=255)

                                                                          cTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCaaaa              <  1:3837639/93‑1 (MQ=255)

                                                                           tGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCaaaaa             >  1:3245150/1‑93 (MQ=255)

                                                                           tGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCaaaaa             <  1:2597752/93‑1 (MQ=255)

                                                                           tGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCaaaaa             <  2:2789702/93‑1 (MQ=255)

                                                                           tGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCaaaaa             >  2:2555491/1‑93 (MQ=255)

                                                                            ggCTCCGCCCAGCGGCTTCAGCCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAg            <  2:201502/93‑1 (MQ=255)

                                                                             gCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGa           <  2:2147573/93‑1 (MQ=255)

                                                                              cTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGaa          <  1:4669680/93‑1 (MQ=255)

                                                                              cTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGaa          <  2:2298959/93‑1 (MQ=255)

                                                                               tGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAAt         <  1:2934881/93‑1 (MQ=255)

                                                                               cgcgcCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAAt         <  2:983970/92‑1 (MQ=255)

                                                                                gcgcCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATg        <  1:354976/93‑1 (MQ=255)

                                                                                gcgcCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATg        >  2:3270209/1‑93 (MQ=255)

                                                                                gcgcCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATg        <  1:4569330/93‑1 (MQ=255)

                                                                                 cgcCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGt       <  2:4540422/93‑1 (MQ=255)

                                                                                  gcCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAGGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTa      <  1:3299710/93‑1 (MQ=255)

                                                                                  gcCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTa      <  1:3754654/93‑1 (MQ=255)

                                                                                  gcCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTa      <  2:3018740/93‑1 (MQ=255)

                                                                                    ccAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGGGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAg    >  2:1222306/1‑93 (MQ=255)

                                                                                    ccAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAg    <  1:3049062/93‑1 (MQ=255)

                                                                                     cagcggCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGc   >  1:727604/1‑93 (MQ=255)

                                                                                      agcggcTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCa  >  1:4639986/1‑93 (MQ=255)

                                                                                      agcggcTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCa  <  1:75897/93‑1 (MQ=255)

TCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCAGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCA  >  NC_000913/2971527‑2971705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTTCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCAGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCACC  >  NC_000913/2971524‑2971707

ATTTCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGG                                                                                            >  SRR4302535.3900271/1‑94 (MQ=60)

   TCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTT                                                                                         >  SRR4302535.2946269/1‑94 (MQ=60)

   TCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTT                                                                                         <  SRR4302535.4236737/94‑1 (MQ=60)

      CCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAG                                                                                      <  SRR4302535.264284/94‑1 (MQ=60)

      CCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAG                                                                                      >  SRR4302535.1718537/1‑94 (MQ=60)

          TGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCG                                                                                  <  SRR4302535.846036/94‑1 (MQ=60)

          TGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCG                                                                                  <  SRR4302535.2507352/94‑1 (MQ=60)

           GAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGT                                                                                 >  SRR4302535.3077260/1‑94 (MQ=60)

             ATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTG                                                                               >  SRR4302535.1436780/1‑94 (MQ=60)

             ATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTG                                                                               <  SRR4302535.663609/94‑1 (MQ=60)

                 GCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGCTGGCGA                                                                           >  SRR4302535.1421359/1‑94 (MQ=60)

                   TGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAAC                                                                         <  SRR4302535.3086275/94‑1 (MQ=60)

                   TGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAAC                                                                         <  SRR4302535.2922624/94‑1 (MQ=60)

                      AGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGGCGTTGGCAAACATC                                                                      >  SRR4302535.1842301/1‑94 (MQ=60)

                      AGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATC                                                                      >  SRR4302535.2959404/1‑94 (MQ=60)

                       GCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCA                                                                     <  SRR4302535.1523404/94‑1 (MQ=60)

                        CACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTTAGGCCGTTGGCAAACATCAT                                                                    >  SRR4302535.1246177/1‑94 (MQ=60)

                        CACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCAT                                                                    >  SRR4302535.815461/1‑94 (MQ=60)

                         ACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCCGGCCGTTGGGAAACATCATC                                                                   >  SRR4302535.1973537/1‑94 (MQ=60)

                         ACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATC                                                                   >  SRR4302535.3761230/1‑94 (MQ=60)

                          CCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCA                                                                  <  SRR4302535.4699137/94‑1 (MQ=60)

                               ACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGG                                                             >  SRR4302535.1218926/1‑94 (MQ=60)

                                CCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGC                                                            <  SRR4302535.4379746/94‑1 (MQ=60)

                                 CCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCC                                                           <  SRR4302535.378519/94‑1 (MQ=60)

                                  CACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCT                                                          <  SRR4302535.3623952/94‑1 (MQ=60)

                                    CCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTT                                                        >  SRR4302535.4638342/1‑94 (MQ=60)

                                    CCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTT                                                        <  SRR4302535.3676134/94‑1 (MQ=60)

                                     CAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTG                                                       <  SRR4302535.2390899/94‑1 (MQ=60)

                                     CAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTG                                                       <  SRR4302535.4710919/94‑1 (MQ=60)

                                     CAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTG                                                       <  SRR4302535.3735277/94‑1 (MQ=60)

                                      AGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGG                                                      <  SRR4302535.3553453/94‑1 (MQ=60)

                                      AGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGG                                                      >  SRR4302535.1093635/1‑94 (MQ=60)

                                        GGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCG                                                    <  SRR4302535.3049170/94‑1 (MQ=60)

                                        CGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCG                                                    >  SRR4302535.689125/1‑94 (MQ=60)

                                         GTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGA                                                   >  SRR4302535.892412/1‑94 (MQ=60)

                                           ATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAG                                                 <  SRR4302535.206886/94‑1 (MQ=60)

                                             AGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCT                                               <  SRR4302535.1012197/94‑1 (MQ=60)

                                             AGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCT                                               >  SRR4302535.3255590/1‑94 (MQ=60)

                                                CGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATC                                            >  SRR4302535.3831121/1‑94 (MQ=60)

                                                 GAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCC                                           >  SRR4302535.3767928/1‑94 (MQ=60)

                                                  AGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCG                                          <  SRR4302535.4023106/94‑1 (MQ=60)

                                                  AGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCG                                          <  SRR4302535.3048589/94‑1 (MQ=60)

                                                    AAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCCCC                                        >  SRR4302535.2872034/1‑94 (MQ=60)

                                                     AACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCA                                       <  SRR4302535.992017/94‑1 (MQ=60)

                                                       CGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACC                                     >  SRR4302535.2147808/1‑94 (MQ=60)

                                                        GGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCT                                    >  SRR4302535.1774713/1‑94 (MQ=60)

                                                         GATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTG                                   >  SRR4302535.432996/1‑94 (MQ=60)

                                                         GATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTG                                   >  SRR4302535.239258/1‑94 (MQ=60)

                                                          ATTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGC                                  >  SRR4302535.4527100/1‑94 (MQ=60)

                                                           TTGATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCC                                 <  SRR4302535.375559/94‑1 (MQ=60)

                                                             GATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCG                               >  SRR4302535.3543081/1‑94 (MQ=60)

                                                             GATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCG                               >  SRR4302535.4472180/1‑94 (MQ=60)

                                                              ATACCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGA                              >  SRR4302535.3241719/1‑94 (MQ=60)

                                                                 CCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAC                           >  SRR4302535.4094021/1‑94 (MQ=60)

                                                                 CCAAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAA                           <  SRR4302535.305270/94‑1 (MQ=60)

                                                                   AAAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAAC                         <  SRR4302535.2492477/94‑1 (MQ=60)

                                                                    AAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACG                        >  SRR4302535.2169450/1‑94 (MQ=60)

                                                                    AAGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACG                        >  SRR4302535.4609772/1‑94 (MQ=60)

                                                                     AGCAGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGG                       <  SRR4302535.2346494/94‑1 (MQ=60)

                                                                        AGATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTAGCGAAGCTATCCGCCACCTGCCCGACAAACtgagc                    >  SRR4302535.551274/1‑89 (MQ=60)

                                                                          ATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA                  <  SRR4302535.3282920/94‑1 (MQ=60)

                                                                          ATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA                  >  SRR4302535.11758/1‑94 (MQ=60)

                                                                          ATACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCACGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAA                  >  SRR4302535.402290/1‑94 (MQ=60)

                                                                           TACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAA                 <  SRR4302535.24877/94‑1 (MQ=60)

                                                                            ACTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAA                >  SRR4302535.860262/1‑94 (MQ=60)

                                                                             CTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAA               >  SRR4302535.3267687/1‑94 (MQ=60)

                                                                             CTGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAA               <  SRR4302535.3864095/94‑1 (MQ=60)

                                                                              TGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAG              <  SRR4302535.1728633/94‑1 (MQ=60)

                                                                              TGGCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAG              <  SRR4302535.2616410/94‑1 (MQ=60)

                                                                                GCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAA            <  SRR4302535.1119743/94‑1 (MQ=60)

                                                                                GCTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAA            >  SRR4302535.4686966/1‑94 (MQ=60)

                                                                                 CTGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAAT           <  SRR4302535.4701225/94‑1 (MQ=60)

                                                                                  TGCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATG          <  SRR4302535.2955536/94‑1 (MQ=60)

                                                                                   GCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGT         <  SRR4302535.357427/94‑1 (MQ=60)

                                                                                   GCGCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGT         <  SRR4302535.4600490/94‑1 (MQ=60)

                                                                                     GCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAGGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAA       <  SRR4302535.3322658/94‑1 (MQ=60)

                                                                                     GCCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAA       <  SRR4302535.3780628/94‑1 (MQ=60)

                                                                                      CCCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAG      >  SRR4302535.4135882/1‑94 (MQ=60)

                                                                                       CCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGC     >  SRR4302535.732715/1‑94 (MQ=60)

                                                                                       CCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGC     >  SRR4302535.2736717/1‑94 (MQ=60)

                                                                                       CCAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGC     <  SRR4302535.3070420/94‑1 (MQ=60)

                                                                                        CAGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCA    >  SRR4302535.4671448/1‑94 (MQ=60)

                                                                                         AGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCAC   >  SRR4302535.2022832/1‑94 (MQ=60)

                                                                                         AGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCAC   <  SRR4302535.76448/94‑1 (MQ=60)

                                                                                         AGCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCAC   >  SRR4302535.1037075/1‑94 (MQ=60)

                                                                                          GCGGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCACC  <  SRR4302535.3089439/94‑1 (MQ=60)

ATTTCGCCGGTGAATAGGCTGCAGCACCAACACCCACCAGCGTATAGCCGAGAAACGGATTGATACCAAAGCAGATACTGGCTGCGCCCAGCAGCTTCAGGCCGTTGGCAAACATCATCACCCGGCCTTTGGCGAAGCTATCCGCCACCTGCCCGACAAACGGCGCAAAAAGAATGTAAGCACC  >  NC_000913/2971524‑2971707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`