Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,975,807 |
A→G |
L372P (CTG→CCG) |
lysA ← |
diaminopimelate decarboxylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,975,807 | 0 | A | G | 98.4%
| 587.2
/ ‑1.2
| 189 | L372P (CTG→CCG) | lysA | diaminopimelate decarboxylase |
| Reads supporting (aligned to +/- strand): ref base A (0/3); new base G (98/88); total (98/91) |
| Fisher's exact test for biased strand distribution p-value = 1.10e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.13e-01 |
Only 100 of 193 total aligned reads displayed.
GCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCA > NC_000913/2975717‑2975896
|
ccTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTa > 2:3623844/1‑93 (MQ=255)
ccTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTa > 2:2020851/1‑93 (MQ=255)
cTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTAc > 2:62690/1‑93 (MQ=255)
tGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTAcc < 1:1418366/93‑1 (MQ=255)
tGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTAcc < 2:57108/93‑1 (MQ=255)
tGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTAca > 1:432763/1‑92 (MQ=255)
gACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCa > 1:1682000/1‑93 (MQ=255)
aCCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAg < 2:1676228/93‑1 (MQ=255)
ttATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATaa < 1:3067816/93‑1 (MQ=255)
ttATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATaa > 1:3225713/1‑93 (MQ=255)
ttATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATaa < 1:4679975/93‑1 (MQ=255)
ttATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATaa < 1:997429/93‑1 (MQ=255)
tATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAAt > 2:29223/1‑93 (MQ=255)
tATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAAt > 2:3578315/1‑93 (MQ=255)
tATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAAt > 2:2551724/1‑93 (MQ=255)
aTCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATc > 1:3896971/1‑93 (MQ=255)
tCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCa > 1:889585/1‑93 (MQ=255)
cAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCAc < 2:2260877/93‑1 (MQ=255)
cAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCAc > 1:2354732/1‑93 (MQ=255)
cAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCAc > 2:2515959/1‑93 (MQ=255)
cAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCAc < 1:2870565/93‑1 (MQ=255)
aaaCAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCAcc < 2:4133205/93‑1 (MQ=255)
aaaCAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCAcc > 1:3094115/1‑93 (MQ=255)
cAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGc > 1:2979761/1‑93 (MQ=255)
aGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGcc > 1:1250591/1‑93 (MQ=255)
gAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCt > 2:1324024/1‑93 (MQ=255)
gAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCt < 1:1126710/93‑1 (MQ=255)
cTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCa > 1:1901451/1‑93 (MQ=255)
attCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCa < 1:3835400/92‑1 (MQ=255)
ttCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCAc < 1:1770708/93‑1 (MQ=255)
ttCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCAc > 1:160999/1‑93 (MQ=255)
tCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACt < 1:3508113/93‑1 (MQ=255)
cTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACtt < 2:3970097/93‑1 (MQ=255)
tGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTc > 1:3036171/1‑93 (MQ=255)
tGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTc > 1:668088/1‑93 (MQ=255)
ggTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTcc < 1:4623237/93‑1 (MQ=255)
aaCAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGc > 1:1336715/1‑93 (MQ=255)
aGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAg < 1:419652/93‑1 (MQ=255)
gCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAgg > 2:1486845/1‑93 (MQ=255)
cGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGgc < 2:1622557/93‑1 (MQ=255)
cGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGgc < 1:1877629/93‑1 (MQ=255)
cGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGgc > 2:4386291/1‑93 (MQ=255)
gACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGgcgc < 2:737366/93‑1 (MQ=255)
gACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGgcgc < 2:2655821/93‑1 (MQ=255)
gcGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGcgcg < 1:2577867/92‑1 (MQ=255)
cGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGTCAAGGCGCgg < 1:2733983/93‑1 (MQ=255)
cGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCgg > 2:4307352/1‑93 (MQ=255)
cGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCgg > 1:2813201/1‑93 (MQ=255)
ggCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCggg < 1:3111137/93‑1 (MQ=255)
gCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTCCCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGt < 2:2598918/93‑1 (MQ=255)
gCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGt < 2:3713713/93‑1 (MQ=255)
tATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGttt > 2:2760818/1‑93 (MQ=255)
aTTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTc < 1:3257490/93‑1 (MQ=255)
aTTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTc > 2:4330700/1‑93 (MQ=255)
ttGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCa > 2:3905984/1‑93 (MQ=255)
ttGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCa > 1:2558610/1‑93 (MQ=255)
ttGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACAttt < 1:2660499/93‑1 (MQ=255)
tGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTc < 1:967836/93‑1 (MQ=255)
gATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTccc < 2:776336/93‑1 (MQ=255)
gATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTccc > 1:2340802/1‑93 (MQ=255)
tGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCGCCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTccccc < 1:378429/93‑1 (MQ=255)
tGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTccccc < 1:2070922/93‑1 (MQ=255)
tGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTccccc > 2:2818132/1‑93 (MQ=255)
tGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTccccc < 2:4283707/93‑1 (MQ=255)
gACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCt < 2:4484487/93‑1 (MQ=255)
gACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCt > 2:3079103/1‑93 (MQ=255)
gACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCt < 1:2447187/93‑1 (MQ=255)
aCATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCtt > 2:1067026/1‑93 (MQ=255)
aTTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTcc < 1:435026/93‑1 (MQ=255)
aTTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTcc < 1:4120970/93‑1 (MQ=255)
aTTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTcc < 1:3306794/93‑1 (MQ=255)
aTTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTcc < 1:758834/93‑1 (MQ=255)
aTTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTcc < 1:934815/93‑1 (MQ=255)
aTTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTcc < 2:349836/93‑1 (MQ=255)
ttGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCct > 2:2970977/1‑93 (MQ=255)
gATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctgc > 1:3548630/1‑93 (MQ=255)
tGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctgctg < 1:856098/93‑1 (MQ=255)
cgcCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTggg < 1:2629487/93‑1 (MQ=255)
ccATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTa > 2:4133484/1‑93 (MQ=255)
cATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTaa > 1:1453102/1‑93 (MQ=255)
atatGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTaaa > 2:808347/1‑93 (MQ=255)
atatGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTaaa > 1:1315029/1‑93 (MQ=255)
gCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACa < 2:3859960/93‑1 (MQ=255)
gCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACa > 1:730369/1‑93 (MQ=255)
ccccTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACAt > 2:4018164/1‑93 (MQ=255)
ccccTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACAt > 2:3426292/1‑93 (MQ=255)
ccccTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACAt > 1:4285772/1‑93 (MQ=255)
cccTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATc > 2:2090428/1‑93 (MQ=255)
ccTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCg > 2:4173018/1‑93 (MQ=255)
ccTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCg > 1:3748566/1‑93 (MQ=255)
cTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGc > 1:2261503/1‑93 (MQ=255)
cTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGCTTCAACATTTCCCACTTCCTGCTGGGTAAAGACATCGc > 2:465108/1‑93 (MQ=255)
gTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGccc < 1:2701221/93‑1 (MQ=255)
tATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCg > 1:982614/1‑93 (MQ=255)
tATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCg > 2:4609547/1‑93 (MQ=255)
tCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGAt > 2:1670105/1‑93 (MQ=255)
tCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGAt > 1:1357230/1‑93 (MQ=255)
cATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGAtt < 1:49336/93‑1 (MQ=255)
aTGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTc > 2:1923954/1‑93 (MQ=255)
tGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTca > 2:2426633/1‑93 (MQ=255)
|
GCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCA > NC_000913/2975717‑2975896
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATA > NC_000913/2975715‑2975900
|
GCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTCTTGTAGTTGGATGACATTGCTACGCCATATGCCCCTGTATCATGCGG > SRR4302535.818172/1‑94 (MQ=60)
GCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGG < SRR4302535.573409/94‑1 (MQ=60)
CTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACC > SRR4302535.3564793/1‑94 (MQ=60)
CTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACA > SRR4302535.435776/1‑94 (MQ=60)
TGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCA < SRR4302535.1428493/94‑1 (MQ=60)
TGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCA > SRR4302535.1694183/1‑94 (MQ=60)
GACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAG < SRR4302535.1646298/94‑1 (MQ=60)
ACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGA > SRR4302535.3641783/1‑94 (MQ=60)
CCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGAT < SRR4302535.255812/94‑1 (MQ=60)
ATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAA > SRR4302535.3248076/1‑94 (MQ=60)
TTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAAT < SRR4302535.1004508/94‑1 (MQ=60)
TTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAAT < SRR4302535.4711580/94‑1 (MQ=60)
TTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAAT > SRR4302535.4010210/1‑94 (MQ=60)
TTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAAT < SRR4302535.3089248/94‑1 (MQ=60)
TATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATC < SRR4302535.2896115/94‑1 (MQ=60)
TATCAAACAGAACTTCTGGTAACAGCGGATGGCTATTGTAGTTGGATGACATTGCTGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATC > SRR4302535.1296433/1‑94 (MQ=60)
TATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATC > SRR4302535.3923676/1‑94 (MQ=60)
ATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCA < SRR4302535.1533544/94‑1 (MQ=60)
ATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCA < SRR4302535.3236354/94‑1 (MQ=60)
ATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCA > SRR4302535.895889/1‑94 (MQ=60)
TCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCAC > SRR4302535.2371616/1‑94 (MQ=60)
CAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACC > SRR4302535.3115662/1‑94 (MQ=60)
CAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACC < SRR4302535.2890904/94‑1 (MQ=60)
ACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGC > SRR4302535.3000668/1‑94 (MQ=60)
CAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCC > SRR4302535.1259521/1‑94 (MQ=60)
GAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTT < SRR4302535.1134753/94‑1 (MQ=60)
AACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTC < SRR4302535.1339667/94‑1 (MQ=60)
AACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATAACCTGCCTTC > SRR4302535.2584432/1‑94 (MQ=60)
ACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCA > SRR4302535.1915136/1‑94 (MQ=60)
CTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCAC > SRR4302535.3800845/1‑94 (MQ=60)
CTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCAC > SRR4302535.162127/1‑94 (MQ=60)
ATTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCAC < SRR4302535.3861847/94‑1 (MQ=60)
TTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACT < SRR4302535.1783540/94‑1 (MQ=60)
TCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTT < SRR4302535.3532494/94‑1 (MQ=60)
CTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTC > SRR4302535.3057433/1‑94 (MQ=60)
CTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTC > SRR4302535.672744/1‑94 (MQ=60)
CTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTC < SRR4302535.788034/94‑1 (MQ=60)
CTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTC > SRR4302535.4261018/1‑94 (MQ=60)
GGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCG < SRR4302535.4654637/94‑1 (MQ=60)
TAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGC > SRR4302535.1346250/1‑94 (MQ=60)
TAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGC < SRR4302535.926007/94‑1 (MQ=60)
AACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCA > SRR4302535.976324/1‑94 (MQ=60)
ACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAA < SRR4302535.2743390/94‑1 (MQ=60)
AGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGG < SRR4302535.422586/94‑1 (MQ=60)
AGCGGACGGCTATTGTAGTGGGATGACATGGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGG < SRR4302535.1357944/94‑1 (MQ=60)
CGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCG < SRR4302535.4224853/94‑1 (MQ=60)
CGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCG < SRR4302535.1891155/94‑1 (MQ=60)
GACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCG < SRR4302535.3919735/94‑1 (MQ=60)
GCGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGG < SRR4302535.2596391/94‑1 (MQ=60)
ACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGG > SRR4302535.2833192/1‑94 (MQ=60)
CGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGTCAAGGCGCGGG < SRR4302535.2753492/94‑1 (MQ=60)
CGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGG > SRR4302535.72248/1‑94 (MQ=60)
CGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGG < SRR4302535.2238131/94‑1 (MQ=60)
GGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGT < SRR4302535.3132798/94‑1 (MQ=60)
gctaggggAGTTGGATGACATTGATGCGCAATATGCCCATGTATCATGCGGGACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTT < SRR4302535.2360614/86‑1 (MQ=60)
GCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTT < SRR4302535.2799200/94‑1 (MQ=60)
GCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTT < SRR4302535.2462560/94‑1 (MQ=60)
ATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCA < SRR4302535.3280124/94‑1 (MQ=60)
ATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCA > SRR4302535.184597/1‑94 (MQ=60)
ATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCA > SRR4302535.2577028/1‑94 (MQ=60)
TAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACAT > SRR4302535.3294646/1‑94 (MQ=60)
TTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTC < SRR4302535.2679557/94‑1 (MQ=60)
TGGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCC < SRR4302535.974714/94‑1 (MQ=60)
GGATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCC > SRR4302535.2357547/1‑94 (MQ=60)
ATGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCC < SRR4302535.143533/94‑1 (MQ=60)
TGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCGCCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCT < SRR4302535.381050/94‑1 (MQ=60)
TGACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCT < SRR4302535.2085846/94‑1 (MQ=60)
TGACATTGATGCGCCATATGCCACTGTATCATGCGGTACCAGATAATCACCTGCCTCCACTTCCGACAAGCCGCGGGTTTCAACATTTCCCCCT < SRR4302535.2464580/94‑1 (MQ=60)
GACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTT < SRR4302535.2464815/94‑1 (MQ=60)
GACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTT > SRR4302535.4705335/1‑94 (MQ=60)
GACATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTT > SRR4302535.2316064/1‑94 (MQ=60)
ATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCT < SRR4302535.941433/94‑1 (MQ=60)
ATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCT < SRR4302535.764179/94‑1 (MQ=60)
ATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCT < SRR4302535.4149169/94‑1 (MQ=60)
ATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCT < SRR4302535.3329803/94‑1 (MQ=60)
ATTGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCT < SRR4302535.438056/94‑1 (MQ=60)
TGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGC > SRR4302535.3573264/1‑94 (MQ=60)
TGATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGC > SRR4302535.4712647/1‑94 (MQ=60)
GATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCT < SRR4302535.1703579/94‑1 (MQ=60)
GATGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCT > SRR4302535.2602788/1‑94 (MQ=60)
TGCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGG < SRR4302535.862132/94‑1 (MQ=60)
GCGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGG > SRR4302535.99440/1‑94 (MQ=60)
CGCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGT < SRR4302535.2648328/94‑1 (MQ=60)
GCCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTA < SRR4302535.269077/94‑1 (MQ=60)
CCATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAA > SRR4302535.1463502/1‑94 (MQ=60)
CATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAA < SRR4302535.3840502/94‑1 (MQ=60)
CATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAA > SRR4302535.1324424/1‑94 (MQ=60)
CATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAA > SRR4302535.892615/1‑94 (MQ=60)
ATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAG > SRR4302535.969487/1‑94 (MQ=60)
ATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAG < SRR4302535.3249638/94‑1 (MQ=60)
ATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAG < SRR4302535.3013648/94‑1 (MQ=60)
ATATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAG > SRR4302535.2678240/1‑94 (MQ=60)
TATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGA < SRR4302535.4489038/94‑1 (MQ=60)
TATGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGA < SRR4302535.618972/94‑1 (MQ=60)
TGCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACA > SRR4302535.735497/1‑94 (MQ=60)
TGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTGCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACA < SRR4302535.4324164/94‑1 (MQ=60)
GCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACAT < SRR4302535.1282928/94‑1 (MQ=60)
GCCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACAT > SRR4302535.4315092/1‑94 (MQ=60)
CCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATC > SRR4302535.3084980/1‑94 (MQ=60)
CCCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATC > SRR4302535.1930897/1‑94 (MQ=60)
CCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCG > SRR4302535.2850747/1‑94 (MQ=60)
CCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCG > SRR4302535.1896223/1‑94 (MQ=60)
CCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCG > SRR4302535.3466876/1‑94 (MQ=60)
CCCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCG > SRR4302535.3774501/1‑94 (MQ=60)
CCTGTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGC > SRR4302535.2277613/1‑94 (MQ=60)
GTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGTGAAAGACATCGCCCG > SRR4302535.737034/1‑94 (MQ=60)
GTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCG < SRR4302535.2720520/94‑1 (MQ=60)
GTATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCG > SRR4302535.989594/1‑94 (MQ=60)
ATCATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGAT > SRR4302535.1366939/1‑94 (MQ=60)
CATGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTC < SRR4302535.49706/94‑1 (MQ=60)
TGCGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCAC < SRR4302535.3096929/94‑1 (MQ=60)
CGGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACAT < SRR4302535.2926083/94‑1 (MQ=60)
GGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATA > SRR4302535.2388585/1‑94 (MQ=60)
|
GCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTGGGTAAAGACATCGCCCGATTCACATA > NC_000913/2975715‑2975900
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
