Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,986,892	C→T	H123H (CAC→CAT)	yqeI →	putative sensory transducer

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,986,892	0	C	T	98.8%	582.1 / NA	166	H123H (CAC→CAT)	yqeI	putative sensory transducer
Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (115/49); minor base A (0/2); total (115/51)
Fisher's exact test for biased strand distribution p-value = 9.31e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 226 total aligned reads displayed.

TGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACACAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATAT  >  NC_000913/2986802‑2986981

tGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATaa                                                                                         <  2:2492058/93‑1 (MQ=255)

tGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATaa                                                                                         <  1:3723457/93‑1 (MQ=255)

 gCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAAt                                                                                        <  2:876548/93‑1 (MQ=255)

 gCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAAt                                                                                        <  2:403975/93‑1 (MQ=255)

 gCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAAt                                                                                        <  2:2513932/93‑1 (MQ=255)

 gCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAAt                                                                                        >  1:1916474/1‑93 (MQ=255)

       gTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCa                                                                                  <  2:1122485/93‑1 (MQ=255)

           cGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTg                                                                              >  1:1061695/1‑93 (MQ=255)

            gagaAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGc                                                                             >  2:2015578/1‑93 (MQ=255)

            gagaAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGc                                                                             >  2:118307/1‑93 (MQ=255)

            gagaAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGc                                                                             <  1:2523506/93‑1 (MQ=255)

               aagaGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCAt                                                                          >  1:4533434/1‑93 (MQ=255)

               aagaGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCAt                                                                          >  2:1258315/1‑93 (MQ=255)

                agagGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATa                                                                         >  1:862572/1‑93 (MQ=255)

                agagGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATa                                                                         >  2:4456563/1‑93 (MQ=255)

                agagGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATa                                                                         >  1:761588/1‑93 (MQ=255)

                agagGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATa                                                                         >  1:3336172/1‑93 (MQ=255)

                 gagGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATaa                                                                        >  2:634748/1‑93 (MQ=255)

                  agGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATaaa                                                                       >  1:1362156/1‑93 (MQ=255)

                   ggATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATaaaa                                                                      <  2:2612556/93‑1 (MQ=255)

                     aTTCAAGATCCATAATGACATAAACATACAAAATCATGAAATAACCTCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGt                                                                    <  2:2424684/93‑1 (MQ=255)

                      ttCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGtt                                                                   >  2:4297519/1‑93 (MQ=255)

                       tCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTa                                                                  >  2:1649106/1‑93 (MQ=255)

                         aaGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAAt                                                                <  1:2624688/93‑1 (MQ=255)

                         aaGATCCATAATGACATAAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAAt                                                                <  2:953046/93‑1 (MQ=255)

                          aGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATg                                                               >  1:1095233/1‑93 (MQ=255)

                             tCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCgg                                                            >  2:3237113/1‑93 (MQ=255)

                             tCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCgg                                                            >  2:4362660/1‑93 (MQ=255)

                             tCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCgg                                                            >  1:1055078/1‑93 (MQ=255)

                              ccATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCggg                                                           >  1:2995559/1‑93 (MQ=255)

                                aTAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGAt                                                         <  1:2733168/93‑1 (MQ=255)

                                aTAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGAt                                                         >  1:3501489/1‑93 (MQ=255)

                                 tAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATa                                                        >  2:2330235/1‑93 (MQ=255)

                                 tAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATa                                                        >  1:950830/1‑93 (MQ=255)

                                  aaTGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATAc                                                       <  1:695716/93‑1 (MQ=255)

                                   aTGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACa                                                      >  1:1308287/1‑93 (MQ=255)

                                    tGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACCTACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACaa                                                     >  2:2918355/1‑93 (MQ=255)

                                     aaCATTAACATACAAAATCTTGAAATAAACTCGTCAACAGACGCAAATACACAAAACGCCCAACCTGCCATAAAAGTTAATGCGGGATACaaa                                                    <  2:1403756/92‑1 (MQ=255)

                                        ataaaCATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAagag                                                 <  2:2859369/90‑1 (MQ=255)

                                        aTTACCATACAAAATCATGTAATAATCTCGTCAACAGCCGCCCATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAagag                                                 <  1:4061238/93‑1 (MQ=255)

                                          tAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAagagag                                               <  1:236864/93‑1 (MQ=255)

                                          tAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAagagag                                               >  1:3849785/1‑93 (MQ=255)

                                           aaCATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGc                                              <  1:3647824/93‑1 (MQ=255)

                                            aCATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCa                                             >  2:756468/1‑93 (MQ=255)

                                             cATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCAt                                            >  2:227587/1‑93 (MQ=255)

                                              aTACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCAtt                                           >  1:4032158/1‑93 (MQ=255)

                                              aTACAAAATATTGTAATAACCTCGTAAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCAtt                                           <  2:3402447/93‑1 (MQ=255)

                                              aTAAAAAATCATGAAATAACCTCGTCAACAGCCGCACATACACATAATCCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCAtt                                           <  2:1669396/93‑1 (MQ=255)

                                               tACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATtg                                          >  2:1533624/1‑93 (MQ=255)

                                                aCAAAATCATGTAATAACCTCGTCAACAGACGCACATACACATAATGCCCTACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATtgg                                         <  1:3301112/93‑1 (MQ=255)

                                                 cAAAATCAGCTAATAACCTCGTCAACAGCCGCACATACACATAATCCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATtggt                                        <  2:563081/93‑1 (MQ=255)

                                                 aaaaaTCTTGTAATAAACTCGTCAACAGACGCACATACACATAATCCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATtggt                                        <  2:2182454/92‑1 (MQ=255)

                                                 aaaaaTCATGTAATAAACTCGTCAACAGCCGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATtggt                                        <  1:2552551/92‑1 (MQ=255)

                                                  aaaaTCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATtggtg                                       >  1:1239570/1‑93 (MQ=255)

                                                   aactCATGAAAAAAACGCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATtggtgg                                      <  1:547122/90‑1 (MQ=255)

                                                   aaaaCATGTAATAACCTCGTAAACAGCCGCACAAACACATATCGCACGTCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATtggtgg                                      <  1:1533449/93‑1 (MQ=255)

                                                   aaaTCATGTAATAAGCTCGTCAACAGACACACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATtggtgg                                      <  1:798962/93‑1 (MQ=255)

                                                   aaaTCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATtggtgg                                      <  2:4316391/93‑1 (MQ=255)

                                                        aTGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCaa                                 >  1:1661452/1‑93 (MQ=255)

                                                        aTGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCaa                                 >  1:3144163/1‑93 (MQ=255)

                                                         tGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCaaa                                >  1:4346876/1‑93 (MQ=255)

                                                         tGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCaaa                                >  1:44508/1‑93 (MQ=255)

                                                         tGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCaaa                                >  2:3861044/1‑93 (MQ=255)

                                                          gTAATAACCTCGTCAGAAGACGCACATACACAAAACGCCCCTCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAg                               <  1:1421288/93‑1 (MQ=255)

                                                          gTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAg                               <  1:4283760/93‑1 (MQ=255)

                                                          gTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAg                               >  1:4148171/1‑93 (MQ=255)

                                                            aataaCCTCGTCAACAGACGCACATACACATAAGCCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGaa                             <  1:2261737/93‑1 (MQ=255)

                                                            aataaACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGaa                             >  2:1592286/1‑93 (MQ=255)

                                                            aataaACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGaa                             >  1:2312671/1‑93 (MQ=255)

                                                            aataaACGCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGaa                             <  2:1778150/93‑1 (MQ=255)

                                                             ataaACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAAt                            >  1:4225701/1‑93 (MQ=255)

                                                              taaACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAAtt                           >  1:1442595/1‑93 (MQ=255)

                                                                accTCGCCAACAGACCCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTc                         <  2:3442094/91‑1 (MQ=255)

                                                                aaCTCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTc                         <  2:2662948/93‑1 (MQ=255)

                                                                  cTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCaa                       >  1:3222974/1‑93 (MQ=255)

                                                                   tCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAAt                      >  2:3165067/1‑93 (MQ=255)

                                                                    cGTCAACAGACGCACATACACATAACGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATa                     <  1:2086432/93‑1 (MQ=255)

                                                                     gTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATaa                    >  2:2686751/1‑93 (MQ=255)

                                                                      tCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAAc                   >  2:2898134/1‑93 (MQ=255)

                                                                      tCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAAc                   >  2:1238788/1‑93 (MQ=255)

                                                                        aaCAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACaa                 >  1:4675983/1‑93 (MQ=255)

                                                                        aaCAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACaa                 >  2:2833994/1‑93 (MQ=255)

                                                                         aCAGACCCACATACACAAAACGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACaaa                <  2:4107524/93‑1 (MQ=255)

                                                                          cAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACaaaa               <  1:4360618/93‑1 (MQ=255)

                                                                          cAGACGCACATACACATAATCCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACaaaa               <  1:3443080/93‑1 (MQ=255)

                                                                           agccGCACATACACATAATCCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAAt              <  1:674069/90‑1 (MQ=255)

                                                                           aGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAAt              <  2:3337638/93‑1 (MQ=255)

                                                                           aGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAAt              <  2:1943215/93‑1 (MQ=255)

                                                                            gACGCACATACACATAATGCCCCCCCTGCCATAAAAGATAAAGCGGGATACAAAGAGGGCATTGGTGGCGCCAAGAATTTTAATAACAAAATc             >  2:2116422/1‑93 (MQ=255)

                                                                             aCGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATcc            <  2:2753482/93‑1 (MQ=255)

                                                                               ccacatacacataATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTc          <  2:3035488/92‑1 (MQ=255)

                                                                                cacatacacataATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCa         >  1:28339/1‑93 (MQ=255)

                                                                                 acaTACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCaa        >  2:3704606/1‑93 (MQ=255)

                                                                                  caTACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCaaa       >  2:2847083/1‑93 (MQ=255)

                                                                                   aTACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAAc      >  1:2792867/1‑93 (MQ=255)

                                                                                    tACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACa     <  2:2134729/93‑1 (MQ=255)

                                                                                    tACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACa     >  1:3923471/1‑93 (MQ=255)

                                                                                    tACACATAATGCCACACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACa     >  2:4604289/1‑93 (MQ=255)

                                                                                      cacataATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACata   >  1:1694856/1‑93 (MQ=255)

                                                                                       acataATCCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACatat  <  2:3647352/93‑1 (MQ=255)

TGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACACAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATAT  >  NC_000913/2986802‑2986981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATTGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACACAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATATAAA  >  NC_000913/2986799‑2986984

AATTGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACAT                                                                                              <  SRR4302535.780839/94‑1 (MQ=60)

AATTGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACAT                                                                                              >  SRR4302535.1379390/1‑94 (MQ=60)

AATTGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACAT                                                                                              >  SRR4302535.3091257/1‑94 (MQ=60)

AATTGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACAT                                                                                              <  SRR4302535.4567632/94‑1 (MQ=60)

 ATTGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATA                                                                                             <  SRR4302535.3477799/94‑1 (MQ=60)

 ATTGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATA                                                                                             <  SRR4302535.2643137/94‑1 (MQ=60)

  TTGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAA                                                                                            <  SRR4302535.4301630/94‑1 (MQ=60)

   TGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAAT                                                                                           <  SRR4302535.3749251/94‑1 (MQ=60)

   TGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAAT                                                                                           >  SRR4302535.1930283/1‑94 (MQ=60)

    GCAGCCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATG                                                                                          <  SRR4302535.438515/94‑1 (MQ=60)

    GCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATG                                                                                          <  SRR4302535.1706539/94‑1 (MQ=60)

     CAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGC                                                                                         <  SRR4302535.842769/94‑1 (MQ=60)

            GCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCT                                                                                  <  SRR4302535.2133139/94‑1 (MQ=60)

             CCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTG                                                                                 >  SRR4302535.3352506/1‑94 (MQ=60)

             CCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTG                                                                                 >  SRR4302535.1069255/1‑94 (MQ=60)

             CCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTG                                                                                 >  SRR4302535.152772/1‑94 (MQ=60)

               GAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCC                                                                               <  SRR4302535.2541691/94‑1 (MQ=60)

                 GAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCAT                                                                             >  SRR4302535.3083740/1‑94 (MQ=60)

                 GAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCAT                                                                             >  SRR4302535.4564459/1‑94 (MQ=60)

                  AAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATA                                                                            >  SRR4302535.297075/1‑94 (MQ=60)

                  AAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATA                                                                            >  SRR4302535.868671/1‑94 (MQ=60)

                  AAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATA                                                                            >  SRR4302535.766957/1‑94 (MQ=60)

                  AAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATA                                                                            >  SRR4302535.3359405/1‑94 (MQ=60)

                    GAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAA                                                                          >  SRR4302535.1371899/1‑94 (MQ=60)

                       GATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGT                                                                       <  SRR4302535.6422/94‑1 (MQ=60)

                        ATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTT                                                                      >  SRR4302535.4621084/1‑94 (MQ=60)

                        ATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTT                                                                      <  SRR4302535.394357/94‑1 (MQ=60)

                        ATTCAAGATCCATAATGACATAAACATACAAAATCATGAAATAAGCGCGTCAACAGACGCCCATACACATAATGCCCCACCTGCCATAAAAGTT                                                                      <  SRR4302535.1273591/94‑1 (MQ=60)

                           CAAGATCCATAATGACATTAACATACAAAATCATGTAATAACCTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAAT                                                                   <  SRR4302535.327384/94‑1 (MQ=60)

                            AAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATG                                                                  <  SRR4302535.2643500/94‑1 (MQ=60)

                            AAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATG                                                                  >  SRR4302535.1103027/1‑94 (MQ=60)

                               ATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGG                                                               >  SRR4302535.1062580/1‑94 (MQ=60)

                                TCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGG                                                              >  SRR4302535.3016557/1‑94 (MQ=60)

                                 CCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGA                                                             >  SRR4302535.1435085/1‑94 (MQ=60)

                                 CCATAATAACATTAACATACAAAATCATGAAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGA                                                             <  SRR4302535.131765/94‑1 (MQ=60)

                                  CATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGAT                                                            >  SRR4302535.3400807/1‑94 (MQ=60)

                                  CATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGAT                                                            >  SRR4302535.4136955/1‑94 (MQ=60)

                                  CATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGAT                                                            >  SRR4302535.3525831/1‑94 (MQ=60)

                                   ATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATA                                                           <  SRR4302535.2752675/94‑1 (MQ=60)

                                   ATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATA                                                           >  SRR4302535.1624375/1‑94 (MQ=60)

                                   ATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATA                                                           >  SRR4302535.957561/1‑94 (MQ=60)

                                   ATAATGACATAAACATACAAAATCATGTAATAAACTCGTAAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATA                                                           <  SRR4302535.953325/94‑1 (MQ=60)

                                    TAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATAC                                                          >  SRR4302535.2489751/1‑94 (MQ=60)

                                    AAATGACATTAACAAACAAAATCATGAAATAACCTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATAC                                                          <  SRR4302535.1498765/94‑1 (MQ=60)

                                    AAATGACATAAACATACAAAATCATGAAATAAACTCGTCAACAGACGCACATACAAATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATAC                                                          <  SRR4302535.4427018/94‑1 (MQ=60)

                                     AATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACA                                                         >  SRR4302535.1317632/1‑94 (MQ=60)

                                     AATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACA                                                         <  SRR4302535.700596/94‑1 (MQ=60)

                                     AATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACA                                                         <  SRR4302535.4070778/94‑1 (MQ=60)

                                     AATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACA                                                         <  SRR4302535.1300844/94‑1 (MQ=60)

                                     AATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACAAAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACA                                                         <  SRR4302535.3482152/94‑1 (MQ=60)

                                       TGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAA                                                       >  SRR4302535.1307008/1‑94 (MQ=60)

                                       TGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAA                                                       <  SRR4302535.2608322/94‑1 (MQ=60)

                                        GACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAG                                                      >  SRR4302535.4377583/1‑94 (MQ=60)

                                         ACATAAACATACAAAATCATGTAATAACCTCGTCAACAGCCGCACATACACATAAGGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGA                                                     <  SRR4302535.3236674/94‑1 (MQ=60)

                                           ATTACCATACAAAATCATGTAATAATCTCGTCAACAGCCGCCCATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGA                                                   <  SRR4302535.4089037/94‑1 (MQ=60)

                                            TTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAG                                                  >  SRR4302535.3876278/1‑94 (MQ=60)

                                             TAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGC                                                 <  SRR4302535.238499/94‑1 (MQ=60)

                                             TAACAAACAAAAGCATGTAATAACCTCGTCAACAGACGCACATACACATAACGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGC                                                 <  SRR4302535.482698/94‑1 (MQ=60)

                                              AACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCA                                                <  SRR4302535.3673083/94‑1 (MQ=60)

                                              AACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCA                                                <  SRR4302535.1838451/94‑1 (MQ=60)

                                                CATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATT                                              >  SRR4302535.4059742/1‑94 (MQ=60)

                                                CAGACAAAATAATGAAATAACCCCGTCAACAGCCGCACATCCACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATT                                              <  SRR4302535.2826625/94‑1 (MQ=60)

                                                 ATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTG                                             <  SRR4302535.3551078/94‑1 (MQ=60)

                                                 ATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTG                                             >  SRR4302535.1412374/1‑94 (MQ=60)

                                                  aaaAAAATCATGAAAAAAACTCGTAAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGG                                            <  SRR4302535.2298354/91‑1 (MQ=60)

                                                  AACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGG                                            <  SRR4302535.688108/94‑1 (MQ=60)

                                                   ACAAAATCATGTAATAACCTCGTCAACAGACGCACATACACATAATGCCCTACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGT                                           <  SRR4302535.3324066/94‑1 (MQ=60)

                                                   ACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGT                                           <  SRR4302535.3950720/94‑1 (MQ=60)

                                                   ACAAAATCATGTAAAAAACTCGACAACAGCCGCACATACAATAAACGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGT                                           <  SRR4302535.4365548/94‑1 (MQ=60)

                                                    CAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATACAAGTTAATGCGGGATACAAAGAGAGCATTGGTG                                          >  SRR4302535.504984/1‑94 (MQ=60)

                                                    CAAAATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTG                                          >  SRR4302535.1248418/1‑94 (MQ=60)

                                                    AAAAATCATGTAATAAACTCGTCAACAGCCGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTG                                          <  SRR4302535.2570930/94‑1 (MQ=60)

                                                      AACTCATGAAAAAAACGCGTCAACAGACGCACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGC                                        <  SRR4302535.550944/94‑1 (MQ=60)

                                                      AAATCATGTAATAAGCTCGTCAACAGACACACATACACATAATGCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGC                                        <  SRR4302535.804572/94‑1 (MQ=60)

                                                       AATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCG                                       >  SRR4302535.3873428/1‑94 (MQ=60)

                                                        ATCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGC                                      <  SRR4302535.1066888/94‑1 (MQ=60)

                                                         TCATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCA                                     >  SRR4302535.4091539/1‑94 (MQ=60)

                                                          CATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAA                                    >  SRR4302535.1673457/1‑94 (MQ=60)

                                                          CATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAA                                    >  SRR4302535.3166032/1‑94 (MQ=60)

                                                           ATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAA                                   >  SRR4302535.3785514/1‑94 (MQ=60)

                                                           ATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAA                                   >  SRR4302535.44845/1‑94 (MQ=60)

                                                           ATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAA                                   >  SRR4302535.4486862/1‑94 (MQ=60)

                                                           ATGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAA                                   >  SRR4302535.4376618/1‑94 (MQ=60)

                                                            TGTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAG                                  >  SRR4302535.4176572/1‑94 (MQ=60)

                                                             GTAATAACCTCGTCAGAAGACGCACATACACAAAACGCCCCTCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGA                                 <  SRR4302535.1431435/94‑1 (MQ=60)

                                                             GTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGA                                 <  SRR4302535.788571/94‑1 (MQ=60)

                                                             GTAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGA                                 <  SRR4302535.4313066/94‑1 (MQ=60)

                                                              TAATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAA                                >  SRR4302535.2329224/1‑94 (MQ=60)

                                                               AATAACCTCGTCAACAGACGCACATACACATAAGCCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAAT                               <  SRR4302535.2277849/94‑1 (MQ=60)

                                                               AATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAAT                               >  SRR4302535.4254616/1‑94 (MQ=60)

                                                                ATAACCTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATT                              <  SRR4302535.2374005/94‑1 (MQ=60)

                                                                ATAAACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATT                              >  SRR4302535.1452916/1‑94 (MQ=60)

                                                                    ACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAA                          >  SRR4302535.3245316/1‑94 (MQ=60)

                                                                    ACTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAA                          >  SRR4302535.4278242/1‑94 (MQ=60)

                                                                     CTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAAT                         <  SRR4302535.782855/94‑1 (MQ=60)

                                                                     CTCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAAT                         >  SRR4302535.4244404/1‑94 (MQ=60)

                                                                      TCGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATA                        >  SRR4302535.2786030/1‑94 (MQ=60)

                                                                       CGTCAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAA                       >  SRR4302535.2416580/1‑94 (MQ=60)

                                                                       CGTCAACAGACGCACATACACATAATCCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAA                       <  SRR4302535.3697870/94‑1 (MQ=60)

                                                                       CGTCAACAGACGCACATACACATAACGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAA                       <  SRR4302535.2101461/94‑1 (MQ=60)

                                                                         TCAACAGACGCAAATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACA                     <  SRR4302535.3171359/94‑1 (MQ=60)

                                                                          CAACAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAA                    >  SRR4302535.4707546/1‑94 (MQ=60)

                                                                             CAGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAAT                 <  SRR4302535.4390463/94‑1 (MQ=60)

                                                                             CAGACGCACATACACATAATCCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAAT                 <  SRR4302535.3467024/94‑1 (MQ=60)

                                                                              AGCCGCACATACACATAATCCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATC                <  SRR4302535.678778/94‑1 (MQ=60)

                                                                              AGACGCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATC                >  SRR4302535.3368158/1‑94 (MQ=60)

                                                                               GACGCACATACACATAATCCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCC               <  SRR4302535.2807946/94‑1 (MQ=60)

                                                                                  GCACATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCA            >  SRR4302535.28562/1‑94 (MQ=60)

                                                                                   CACATCCACATAATCCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAA           <  SRR4302535.717479/94‑1 (MQ=60)

                                                                                   CACATACACATAATCCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAA           <  SRR4302535.2550025/94‑1 (MQ=60)

                                                                                     CATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAAC         >  SRR4302535.2812740/1‑94 (MQ=60)

                                                                                     CATACACATAATCCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAAC         <  SRR4302535.2661714/94‑1 (MQ=60)

                                                                                     CAAACACATAATCCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAAC         <  SRR4302535.922068/94‑1 (MQ=60)

                                                                                      ATACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACA        >  SRR4302535.3950283/1‑94 (MQ=60)

                                                                                       TACACATAATCCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACAT       <  SRR4302535.2087477/94‑1 (MQ=60)

                                                                                        ACACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATA      >  SRR4302535.1707109/1‑94 (MQ=60)

                                                                                         CACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATGT     <  SRR4302535.199106/94‑1 (MQ=60)

                                                                                         CACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATAT     >  SRR4302535.1149288/1‑94 (MQ=60)

                                                                                         CACATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATAT     >  SRR4302535.1092868/1‑94 (MQ=60)

                                                                                           CATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATATAA   >  SRR4302535.1890217/1‑94 (MQ=60)

                                                                                           CATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATATAA   <  SRR4302535.2193753/94‑1 (MQ=60)

                                                                                           CATAATCCCCCCCCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATATAA   <  SRR4302535.4254609/94‑1 (MQ=60)

                                                                                            ATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATATAAA  >  SRR4302535.3306765/1‑94 (MQ=60)

                                                                                            ATAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATATAAA  >  SRR4302535.2340713/1‑94 (MQ=60)

AATTGCAACCGTGCCGAGAAGAGGATTCAAGATCCATAATGACATTAACATACAAAATCATGTAATAAACTCGTCAACAGACGCACATACACACAATGCCCCACCTGCCATAAAAGTTAATGCGGGATACAAAGAGAGCATTGGTGGCGCAAAGAATTTCAATAACAAAATCCTCAAACATATAAA  >  NC_000913/2986799‑2986984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`