Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,997,285 |
(T)6→7 |
coding (629/756 nt) |
b2865 ← |
putative lipoprotein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,997,279 | 1 | . | T | 98.4%
| 681.7
/ 2.2
| 189 | coding (635/756 nt) | b2865 | putative lipoprotein |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base T (80/106); total (81/108) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01 |
Only 100 of 220 total aligned reads displayed.
GCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTT > NC_000913/2997187‑2997366
|
gcAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGa > 2:4031155/1‑93 (MQ=255)
gcAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGa > 2:3720848/1‑93 (MQ=255)
cAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑t > 1:1179488/1‑93 (MQ=255)
aGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑ttt > 2:2976025/1‑93 (MQ=255)
aGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑ttt < 2:739727/93‑1 (MQ=255)
gTAACGTAGCGGATCAATTGCTGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑tttt < 2:3599657/93‑1 (MQ=255)
gTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑tttt > 1:4237291/1‑93 (MQ=255)
tAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑ttttt < 2:1436644/93‑1 (MQ=255)
aCGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑TTTTTTg > 2:2096924/1‑93 (MQ=255)
cGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑tttttttg < 1:2922964/93‑3 (MQ=255)
gTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑tttttttgc > 1:3272660/1‑90 (MQ=255)
tAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑tttttttgcc > 1:248926/1‑89 (MQ=255)
gCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCa < 1:3798951/93‑1 (MQ=255)
gCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCa > 1:2989619/1‑93 (MQ=255)
gCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCa < 1:3380460/93‑1 (MQ=255)
cGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAg < 1:4288956/93‑1 (MQ=255)
ggATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGc > 2:2231181/1‑93 (MQ=255)
gATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGcc > 2:3336298/1‑93 (MQ=255)
aTCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCt < 2:1661146/93‑1 (MQ=255)
tCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCGCCATAGTGGCGATTTTTTTGCCCAGCCtt > 1:2026569/1‑93 (MQ=255)
tCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCtt < 1:1000846/93‑1 (MQ=255)
tCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCtt > 2:1124698/1‑93 (MQ=255)
cAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTc < 2:2632464/93‑1 (MQ=255)
aaTTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCa < 1:161013/93‑1 (MQ=255)
aaTTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCa < 1:50923/93‑1 (MQ=255)
aTTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCAc > 1:4206019/1‑93 (MQ=255)
tGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGc < 2:2422179/93‑1 (MQ=255)
tGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGc < 2:4195110/93‑1 (MQ=255)
gCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCt > 1:2077987/1‑93 (MQ=255)
gCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCt < 1:778136/93‑1 (MQ=255)
gCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCt < 1:4445636/93‑1 (MQ=255)
ccGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCtt < 1:2269177/93‑1 (MQ=255)
ttGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGc > 1:2354035/1‑93 (MQ=255)
tGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGcc > 2:3498208/1‑93 (MQ=255)
cACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCa < 2:3693579/93‑1 (MQ=255)
cACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCa < 2:864052/93‑1 (MQ=255)
cACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCa > 1:922656/1‑93 (MQ=255)
aCGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCat > 2:2858447/1‑93 (MQ=255)
aCGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCat > 2:1538889/1‑93 (MQ=255)
aCGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCat > 1:1563903/1‑93 (MQ=255)
aCGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCat > 2:4466876/1‑93 (MQ=255)
ggTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCatta < 1:4125737/93‑1 (MQ=255)
ggTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCatta > 2:3041391/1‑93 (MQ=255)
ggTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCatta < 2:4243121/93‑1 (MQ=255)
gTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATATTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCattat > 1:4504739/1‑93 (MQ=255)
gTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCattat < 1:3059279/93‑1 (MQ=255)
gTAACGAAGCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCattat < 2:160115/93‑1 (MQ=255)
tAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCattatt > 2:4649420/1‑93 (MQ=255)
aaCGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTAttt < 2:1956851/93‑1 (MQ=255)
aCGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTa > 1:1287950/1‑93 (MQ=255)
aCGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTa > 1:1212757/1‑93 (MQ=255)
aCGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTa > 1:1600978/1‑93 (MQ=255)
aaTCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCa > 2:2552049/1‑93 (MQ=255)
aaTCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCa < 1:2646583/93‑1 (MQ=255)
aaTCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCa < 1:1714253/93‑1 (MQ=255)
aaTCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCGCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCa < 1:45832/93‑1 (MQ=255)
aTCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAg > 2:1857228/1‑93 (MQ=255)
cTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCa > 1:4141098/1‑93 (MQ=255)
tGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCAt < 2:3740844/93‑1 (MQ=255)
ggAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATc < 1:4478481/93‑1 (MQ=255)
ggAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATc > 2:458750/1‑93 (MQ=255)
gAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCg < 1:3759177/93‑1 (MQ=255)
gAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCg > 2:1726139/1‑93 (MQ=255)
aaaTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgt < 1:1791391/93‑1 (MQ=255)
aaTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgtg > 2:660308/1‑93 (MQ=255)
aTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgtgt < 1:1066597/93‑1 (MQ=255)
tGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTc < 2:2396403/93‑1 (MQ=255)
ggCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTa < 2:1176548/93‑1 (MQ=255)
cGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATg < 2:3763094/93‑1 (MQ=255)
gAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATgg > 2:3922161/1‑93 (MQ=255)
aCAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGc < 2:3565185/93‑1 (MQ=255)
cAGATGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCg > 1:4375914/1‑93 (MQ=255)
aggCCCCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTaa < 2:1397764/91‑1 (MQ=255)
aTGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTaa < 1:4036108/93‑1 (MQ=255)
aTGCCGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTaa < 2:2719500/93‑1 (MQ=255)
ccGCATCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGcc < 2:4099158/93‑1 (MQ=255)
gCATCCGTTCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgt > 2:4555815/1‑93 (MQ=255)
aTCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaa < 2:3531063/93‑1 (MQ=255)
aTCCGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaa < 1:1959564/93‑1 (MQ=255)
ccGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatg < 1:2031667/93‑1 (MQ=255)
cGTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatgt > 1:2728151/1‑93 (MQ=255)
gTGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatgta > 1:3887578/1‑93 (MQ=255)
tGCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatgtaa > 1:64464/1‑93 (MQ=255)
gCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatgtaat < 1:244847/93‑1 (MQ=255)
gCTCCCCATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatgtaat < 1:3099077/93‑1 (MQ=255)
ccccATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCtt < 1:745283/93‑1 (MQ=255)
cccATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTc < 1:3139636/93‑1 (MQ=255)
ccATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCa < 1:3829228/93‑1 (MQ=255)
ccATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCa < 2:3121126/93‑1 (MQ=255)
ccATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCa > 2:1698891/1‑93 (MQ=255)
ccATAGTGGCGATTTTTTTGCCAAGCCTTCACGCTTTGCCCATTATTTATTAGCATCGTGTCATTTAGTGCGTAAGTCGTAATGTAATCTTCa > 2:2946733/1‑93 (MQ=255)
cATAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCAc < 2:557610/93‑1 (MQ=255)
tAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtg > 1:2795867/1‑93 (MQ=255)
tAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtg > 2:678757/1‑93 (MQ=255)
tAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtg < 1:4362350/93‑1 (MQ=255)
tAGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCACATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtg > 1:1743769/1‑93 (MQ=255)
aGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtgt < 1:2566065/93‑1 (MQ=255)
aGTGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtgt < 2:2055555/93‑1 (MQ=255)
tGGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTgtgt > 2:782044/1‑93 (MQ=255)
ggCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGtt < 2:437852/93‑1 (MQ=255)
|
GCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTT > NC_000913/2997187‑2997366
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑T‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCATGATG > NC_000913/2997193‑2997377
|
AACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑T‑TTTTT‑T < SRR4302535.440354/94‑1 (MQ=60)
AACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAAGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑T‑TTTTT‑T < SRR4302535.802462/94‑1 (MQ=60)
CGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑T‑TTTTTtgc < SRR4302535.2943578/94‑4 (MQ=60)
CGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑T‑TTTTTtgc > SRR4302535.3295394/1‑91 (MQ=60)
GTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCC > SRR4302535.250638/1‑94 (MQ=60)
TAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCC > SRR4302535.3519604/1‑94 (MQ=60)
AGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCA > SRR4302535.3010579/1‑94 (MQ=60)
GCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAG < SRR4302535.3403963/94‑1 (MQ=60)
GCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAG < SRR4302535.571837/94‑1 (MQ=60)
GCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAG < SRR4302535.3825139/94‑1 (MQ=60)
CGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGC < SRR4302535.4318293/94‑1 (MQ=60)
CGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑T‑TTTTTtgctcagc > SRR4302535.1831879/1‑86 (MQ=60)
GGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCC > SRR4302535.1059109/1‑94 (MQ=60)
ATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCGCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTT > SRR4302535.2041171/1‑94 (MQ=60)
ATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTT > SRR4302535.2049462/1‑94 (MQ=60)
TCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTC < SRR4302535.1007959/94‑1 (MQ=60)
TCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTC < SRR4302535.3033834/94‑1 (MQ=60)
AATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCAC < SRR4302535.51297/94‑1 (MQ=60)
AATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCAC < SRR4302535.162141/94‑1 (MQ=60)
AATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCAC > SRR4302535.4234801/1‑94 (MQ=60)
AATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCAC < SRR4302535.1111783/94‑1 (MQ=60)
ATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACG < SRR4302535.2995168/94‑1 (MQ=60)
ATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACG > SRR4302535.1582639/1‑94 (MQ=60)
ATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACG < SRR4302535.3519490/94‑1 (MQ=60)
TGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCT > SRR4302535.2092956/1‑94 (MQ=60)
GCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTT < SRR4302535.4476124/94‑1 (MQ=60)
GCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTT < SRR4302535.783603/94‑1 (MQ=60)
CCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTT < SRR4302535.2285356/94‑1 (MQ=60)
GTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGC > SRR4302535.2370913/1‑94 (MQ=60)
GTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGC > SRR4302535.3620078/1‑94 (MQ=60)
TGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCC < SRR4302535.4310651/94‑1 (MQ=60)
GCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCA > SRR4302535.929195/1‑94 (MQ=60)
CACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCAT > SRR4302535.1575191/1‑94 (MQ=60)
CACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑T‑TTTTTCGCCCAGCCTTCACGCTTTGCCCAT < SRR4302535.1749027/94‑1 (MQ=60)
ACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATT < SRR4302535.3848303/94‑1 (MQ=60)
CGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTA > SRR4302535.4055934/1‑94 (MQ=60)
CGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTA < SRR4302535.686408/94‑1 (MQ=60)
GGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATATTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTAT > SRR4302535.4535668/1‑94 (MQ=60)
GGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTAT > SRR4302535.1769415/1‑94 (MQ=60)
GGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTAT < SRR4302535.4153973/94‑1 (MQ=60)
GTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATT < SRR4302535.3080677/94‑1 (MQ=60)
AACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTA > SRR4302535.1612527/1‑94 (MQ=60)
AACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTA > SRR4302535.1297128/1‑94 (MQ=60)
AACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTA < SRR4302535.4104953/94‑1 (MQ=60)
AACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTA > SRR4302535.1221457/1‑94 (MQ=60)
CGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACC < SRR4302535.4473248/94‑1 (MQ=60)
AATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAG < SRR4302535.2665538/94‑1 (MQ=60)
AATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAG < SRR4302535.1726649/94‑1 (MQ=60)
AATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCGCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAG < SRR4302535.46180/94‑1 (MQ=60)
TCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCA > SRR4302535.4169453/1‑94 (MQ=60)
TGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATC > SRR4302535.4552543/1‑94 (MQ=60)
TGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATC < SRR4302535.4261048/94‑1 (MQ=60)
GGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCG < SRR4302535.4509228/94‑1 (MQ=60)
GAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGT < SRR4302535.3785164/94‑1 (MQ=60)
AAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGGCTTCACGCTTTGCCCATTATTTACCAGCATCGTG > SRR4302535.312843/1‑94 (MQ=60)
AAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTG < SRR4302535.1804344/94‑1 (MQ=60)
AATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGT > SRR4302535.1616677/1‑94 (MQ=60)
ATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTC < SRR4302535.1074183/94‑1 (MQ=60)
ATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTC > SRR4302535.2487994/1‑94 (MQ=60)
TGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCA < SRR4302535.3857740/94‑1 (MQ=60)
CAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATT < SRR4302535.379638/94‑1 (MQ=60)
AGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTT > SRR4302535.3210655/1‑94 (MQ=60)
GCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATG < SRR4302535.121576/94‑1 (MQ=60)
GCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATG < SRR4302535.826423/94‑1 (MQ=60)
CGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGG < SRR4302535.1652891/94‑1 (MQ=60)
CGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGG < SRR4302535.448498/94‑1 (MQ=60)
GAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGG < SRR4302535.4604998/94‑1 (MQ=60)
GAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGG > SRR4302535.3358312/1‑94 (MQ=60)
GAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGG > SRR4302535.4374906/1‑94 (MQ=60)
GAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGG < SRR4302535.211832/94‑1 (MQ=60)
AACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGC > SRR4302535.1330349/1‑94 (MQ=60)
AACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGC > SRR4302535.2882259/1‑94 (MQ=60)
ACAGATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCG > SRR4302535.4405855/1‑94 (MQ=60)
ATGCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAG < SRR4302535.4063737/94‑1 (MQ=60)
GCCGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCC < SRR4302535.1534689/94‑1 (MQ=60)
GCCGCAGCCGTTCTCCCCATAGTGGCAATT‑TTTTT‑GCCCCGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCC < SRR4302535.123081/94‑1 (MQ=60)
CGCATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGT > SRR4302535.4334507/1‑94 (MQ=60)
CATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAA < SRR4302535.2292979/94‑1 (MQ=60)
ATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAAT > SRR4302535.4113856/1‑94 (MQ=60)
ATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAAT < SRR4302535.1973697/94‑1 (MQ=60)
ATCCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAAT > SRR4302535.4531550/1‑94 (MQ=60)
CCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGT > SRR4302535.500930/1‑94 (MQ=60)
CCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGT > SRR4302535.2747632/1‑94 (MQ=60)
CCGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGT < SRR4302535.2046307/94‑1 (MQ=60)
CGTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTA > SRR4302535.3914244/1‑94 (MQ=60)
GTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAA > SRR4302535.64950/1‑94 (MQ=60)
GTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAA < SRR4302535.1977869/94‑1 (MQ=60)
GTGCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAA > SRR4302535.2045610/1‑94 (MQ=60)
GCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATC < SRR4302535.3120655/94‑1 (MQ=60)
GCTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATC < SRR4302535.246526/94‑1 (MQ=60)
CTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCT > SRR4302535.2543990/1‑94 (MQ=60)
CTCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCT > SRR4302535.2650044/1‑94 (MQ=60)
TCCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTT < SRR4302535.4161117/94‑1 (MQ=60)
CCCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTC < SRR4302535.750520/94‑1 (MQ=60)
CCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCA < SRR4302535.3161482/94‑1 (MQ=60)
CCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCA < SRR4302535.223283/94‑1 (MQ=60)
CCCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCA > SRR4302535.3027170/1‑94 (MQ=60)
CCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTGCCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCAC < SRR4302535.308755/94‑1 (MQ=60)
CCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCAC < SRR4302535.3855639/94‑1 (MQ=60)
CCATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCAC > SRR4302535.264533/1‑94 (MQ=60)
CATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACT > SRR4302535.4230170/1‑94 (MQ=60)
ATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTG > SRR4302535.2815765/1‑94 (MQ=60)
ATAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCACATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTG > SRR4302535.1756385/1‑94 (MQ=60)
TAGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGT < SRR4302535.4392202/94‑1 (MQ=60)
AGTGGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTG < SRR4302535.2584526/94‑1 (MQ=60)
AGTGGCGA‑TCTTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTG < SRR4302535.773421/94‑1 (MQ=60)
TGGCGATT‑TTTTT‑TCCCAGCCTTCACGCTTGGCCCATTATTTGCCAGCATCGTGGCATTATGGGCTTAAGCCGTAATGTAATCTTCACTGTGTT < SRR4302535.941995/94‑1 (MQ=60)
GGCGATT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTT > SRR4302535.2582399/1‑94 (MQ=60)
gatT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAAT < SRR4302535.580981/91‑1 (MQ=60)
atT‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTCAGCCGTAATGTAATCTTCACTGTGTTTAATC > SRR4302535.368839/3‑94 (MQ=60)
T‑T‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCA < SRR4302535.2120695/94‑1 (MQ=60)
T‑T‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCA < SRR4302535.917198/94‑1 (MQ=60)
T‑T‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCA > SRR4302535.4312330/1‑94 (MQ=60)
T‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCAT < SRR4302535.2709952/94‑1 (MQ=60)
T‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCAT < SRR4302535.4205749/94‑1 (MQ=60)
TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCATG < SRR4302535.2540201/94‑1 (MQ=60)
TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCATG < SRR4302535.2509739/94‑1 (MQ=60)
TT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCATGATG < SRR4302535.502363/94‑1 (MQ=60)
TT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCATGATG < SRR4302535.3162501/94‑1 (MQ=60)
|
AACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGA‑T‑TTTTT‑GCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATCATGATG > NC_000913/2997193‑2997377
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
