Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,997,977 T→C intergenic (‑64/‑390) b2865 ← / → b2866 putative lipoprotein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,997,9770TC99.7% 1141.9 / NA 357intergenic (‑64/‑390)b2865/b2866putative lipoprotein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (182/174);  minor base A (0/1);  total (182/175)
Fisher's exact test for biased strand distribution p-value = 4.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 369 total aligned reads displayed.

TTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCTCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGG  >  NC_000913/2997887‑2998066
                                                                                          |                                                                                         
ttttttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATccct                                                                                         >  1:6533179/1‑93 (MQ=255)
 tttttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCtt                                                                                        <  1:432549/93‑1 (MQ=255)
   tttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGc                                                                                      >  1:7110115/1‑93 (MQ=255)
   tttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGc                                                                                      >  1:6224510/1‑93 (MQ=255)
      aTTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTc                                                                                   >  2:1991039/1‑93 (MQ=255)
      aTTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTc                                                                                   <  2:1658535/93‑1 (MQ=255)
      aTTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTc                                                                                   <  1:2854072/93‑1 (MQ=255)
      aTTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTc                                                                                   <  1:4046892/93‑1 (MQ=255)
       ttCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCt                                                                                  >  1:1841954/1‑93 (MQ=255)
        tCAGGCGTCCCGCACCCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTg                                                                                 >  2:7924473/1‑93 (MQ=255)
        tCAGGCCCCCCGCACTCAAAACCTTTCCTCGCTTAAAACACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTg                                                                                 <  2:1301259/93‑1 (MQ=255)
          aGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGa                                                                               <  2:6763696/93‑1 (MQ=255)
           ggCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGaa                                                                              >  1:7700608/1‑93 (MQ=255)
           ggCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGaa                                                                              >  1:5266503/1‑93 (MQ=255)
              gTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGaaaaa                                                                           >  2:904783/1‑93 (MQ=255)
              gTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGaaaaa                                                                           <  1:7289224/93‑1 (MQ=255)
               tCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAc                                                                          >  1:4437648/1‑93 (MQ=255)
               tCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAc                                                                          >  2:7474049/1‑93 (MQ=255)
                   gCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTgg                                                                      >  1:339860/1‑93 (MQ=255)
                   gCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTgg                                                                      >  1:2510437/1‑93 (MQ=255)
                   gCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTgg                                                                      <  2:6627732/93‑1 (MQ=255)
                   gCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTgg                                                                      <  1:5727021/93‑1 (MQ=255)
                    cACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGt                                                                     >  1:3089714/1‑93 (MQ=255)
                     aCTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTa                                                                    >  2:2685339/1‑93 (MQ=255)
                      cTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTaa                                                                   >  1:3498577/1‑93 (MQ=255)
                      cTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTaa                                                                   >  2:2385116/1‑93 (MQ=255)
                      cTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTaa                                                                   >  1:4952144/1‑93 (MQ=255)
                       tCAAAATCTTTCCTCGTTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCGTCATGATACACAATCCCTAGCTTCTGGAAAAACGTGGTAAt                                                                  <  2:3651233/93‑1 (MQ=255)
                       tCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAt                                                                  >  2:630574/1‑93 (MQ=255)
                       tCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAt                                                                  >  2:6700877/1‑93 (MQ=255)
                       tCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAt                                                                  >  1:1279539/1‑93 (MQ=255)
                        cAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATa                                                                 <  2:3727545/93‑1 (MQ=255)
                         aaaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATag                                                                <  1:5499689/93‑1 (MQ=255)
                          aaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATaga                                                               <  2:7131588/93‑1 (MQ=255)
                          aaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATaga                                                               <  2:2828823/93‑1 (MQ=255)
                          aaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATaga                                                               >  1:1665001/1‑93 (MQ=255)
                            aTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAgaga                                                             <  1:3797175/93‑1 (MQ=255)
                            aTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAgaga                                                             >  2:1736981/1‑93 (MQ=255)
                             tCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGaa                                                            >  1:5866554/1‑93 (MQ=255)
                             tCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGaa                                                            >  1:2154240/1‑93 (MQ=255)
                              cTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGaaa                                                           >  1:7472961/1‑93 (MQ=255)
                               tttCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAag                                                          >  1:7336403/1‑93 (MQ=255)
                                ttCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAaga                                                         >  2:1459611/1‑93 (MQ=255)
                                  ccTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAgg                                                       >  1:6941659/1‑93 (MQ=255)
                                   cTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGt                                                      >  1:4490073/1‑93 (MQ=255)
                                    tCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGtt                                                     <  2:5849003/93‑1 (MQ=255)
                                    tCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGtt                                                     >  2:5529914/1‑93 (MQ=255)
                                    tCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGtt                                                     >  2:1390372/1‑93 (MQ=255)
                                      gCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTaa                                                   <  2:6922644/93‑1 (MQ=255)
                                       cTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAt                                                  <  2:6191916/93‑1 (MQ=255)
                                       cTTAAAAAACAAGACGCCTTATCATAGAAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAt                                                  <  1:1081944/93‑1 (MQ=255)
                                        ttAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAtt                                                 <  1:3319633/93‑1 (MQ=255)
                                          aaaaaaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGCAATAGAGAAAGAGGGTAAtttt                                               >  2:4929237/1‑92 (MQ=255)
                                           aaaaaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCa                                              <  1:4677133/93‑1 (MQ=255)
                                              aaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAttt                                           <  2:2285266/93‑1 (MQ=255)
                                              aaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAttt                                           >  1:6661790/1‑93 (MQ=255)
                                              aaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAttt                                           <  2:3011250/93‑1 (MQ=255)
                                               aCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTg                                          <  2:4636030/93‑1 (MQ=255)
                                               aCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTg                                          <  2:4347219/93‑1 (MQ=255)
                                               aCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTg                                          <  1:6610712/93‑1 (MQ=255)
                                                 aaGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGc                                        >  1:970125/1‑93 (MQ=255)
                                                  aGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCa                                       <  2:4891587/93‑1 (MQ=255)
                                                   gACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCaa                                      <  1:7839005/93‑1 (MQ=255)
                                                     cGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAg                                    >  2:5995872/1‑93 (MQ=255)
                                                     cGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAg                                    >  2:4531049/1‑93 (MQ=255)
                                                     cGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAg                                    <  2:7237209/93‑1 (MQ=255)
                                                      gCCTTATCATAGCAGCCAGCCTCTTGATTCCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAgg                                   <  2:3950490/93‑1 (MQ=255)
                                                      gCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAgg                                   >  2:4183529/1‑93 (MQ=255)
                                                      gCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAgg                                   <  1:10004/93‑1 (MQ=255)
                                                        cTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGa                                 >  2:7061648/1‑93 (MQ=255)
                                                        cTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGa                                 <  2:179231/93‑1 (MQ=255)
                                                         ttATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGaa                                >  1:3627182/1‑93 (MQ=255)
                                                         ttATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGaa                                >  1:3231615/1‑93 (MQ=255)
                                                         ttATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGaa                                >  2:5022331/1‑93 (MQ=255)
                                                          tATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAg                               >  2:2143109/1‑93 (MQ=255)
                                                          tATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAg                               <  2:5743848/93‑1 (MQ=255)
                                                            tCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTa                             <  1:6095626/93‑1 (MQ=255)
                                                            tCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTa                             >  1:6784289/1‑93 (MQ=255)
                                                             cATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTat                            >  2:6102212/1‑93 (MQ=255)
                                                              aTAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatc                           <  1:72315/93‑1 (MQ=255)
                                                               tAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatca                          >  2:7623019/1‑93 (MQ=255)
                                                                 gcagcCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatcatc                        >  1:6828587/1‑93 (MQ=255)
                                                                    gccagccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGc                     >  2:5314459/1‑93 (MQ=255)
                                                                       agccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCaaa                  >  2:7705817/1‑93 (MQ=255)
                                                                       agccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCaaa                  >  2:3425157/1‑93 (MQ=255)
                                                                        gccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCaaaa                 >  2:2588668/1‑93 (MQ=255)
                                                                        gccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCaaaa                 >  1:6328686/1‑93 (MQ=255)
                                                                         ccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAat                <  2:3134062/93‑1 (MQ=255)
                                                                         ccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAat                <  1:2435576/93‑1 (MQ=255)
                                                                           tctTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAatat              >  2:2514485/1‑93 (MQ=255)
                                                                           tctTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAatat              >  1:393928/1‑93 (MQ=255)
                                                                                 tACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTg        <  1:6450696/93‑1 (MQ=255)
                                                                                    ccAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTag     <  1:5073409/93‑1 (MQ=255)
                                                                                    ccAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTag     <  2:5095333/93‑1 (MQ=255)
                                                                                     cAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTaga    >  2:6405472/1‑93 (MQ=255)
                                                                                     cAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTaga    <  2:4978087/93‑1 (MQ=255)
                                                                                      aaTCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTagag   >  1:5624917/1‑93 (MQ=255)
                                                                                       aTCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAgg  <  1:3146179/93‑1 (MQ=255)
                                                                                       aTCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAgg  >  1:2372024/1‑93 (MQ=255)
                                                                                       aTCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTAGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAgg  <  1:2654438/93‑1 (MQ=255)
                                                                                          |                                                                                         
TTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCTCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGG  >  NC_000913/2997887‑2998066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCTCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTAT  >  NC_000913/2997884‑2998069
                                                                                             |                                                                                            
AGATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCC                                                                                              <  SRR4302543.7861953/94‑1 (MQ=60)
AGATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCC                                                                                              >  SRR4302543.370875/1‑94 (MQ=60)
AGATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCC                                                                                              >  SRR4302543.2482153/1‑94 (MQ=60)
AGATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCC                                                                                              >  SRR4302543.1206261/1‑94 (MQ=60)
AGATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCC                                                                                              >  SRR4302543.6309641/1‑94 (MQ=60)
  ATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCT                                                                                            >  SRR4302543.6594684/1‑94 (MQ=60)
   TTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTT                                                                                           >  SRR4302543.1221746/1‑94 (MQ=60)
   TTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTT                                                                                           >  SRR4302543.633689/1‑94 (MQ=60)
    TTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTG                                                                                          <  SRR4302543.436602/94‑1 (MQ=60)
    TTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTG                                                                                          <  SRR4302543.6183188/94‑1 (MQ=60)
     TTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGC                                                                                         >  SRR4302543.6283265/1‑94 (MQ=60)
     TTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGC                                                                                         >  SRR4302543.2490601/1‑94 (MQ=60)
     TTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGC                                                                                         <  SRR4302543.7121496/94‑1 (MQ=60)
     TTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGC                                                                                         >  SRR4302543.7179187/1‑94 (MQ=60)
        TATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTC                                                                                      <  SRR4302543.7837246/94‑1 (MQ=60)
         ATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCT                                                                                     <  SRR4302543.2880113/94‑1 (MQ=60)
         ATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCT                                                                                     >  SRR4302543.1858521/1‑94 (MQ=60)
         ATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCT                                                                                     >  SRR4302543.3539680/1‑94 (MQ=60)
         ATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCT                                                                                     <  SRR4302543.7270790/94‑1 (MQ=60)
         ATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCT                                                                                     <  SRR4302543.4083108/94‑1 (MQ=60)
         ATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCT                                                                                     <  SRR4302543.459743/94‑1 (MQ=60)
          TTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTG                                                                                    <  SRR4302543.6692312/94‑1 (MQ=60)
           TCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGG                                                                                   >  SRR4302543.615695/1‑94 (MQ=60)
            CAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGA                                                                                  <  SRR4302543.4909483/94‑1 (MQ=60)
             AGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAA                                                                                 >  SRR4302543.5314020/1‑94 (MQ=60)
             AGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAA                                                                                 >  SRR4302543.7773487/1‑94 (MQ=60)
             AGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAA                                                                                 >  SRR4302543.5767485/1‑94 (MQ=60)
              GGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAA                                                                                >  SRR4302543.5635350/1‑94 (MQ=60)
              GGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAA                                                                                >  SRR4302543.2030513/1‑94 (MQ=60)
                 GTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAC                                                                             >  SRR4302543.2475441/1‑94 (MQ=60)
                 GTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAC                                                                             >  SRR4302543.4477837/1‑94 (MQ=60)
                 GTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAC                                                                             <  SRR4302543.7359584/94‑1 (MQ=60)
                 GTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAC                                                                             >  SRR4302543.5854573/1‑94 (MQ=60)
                 GTCCCGCACTCAAAATCTGTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAC                                                                             <  SRR4302543.7359583/94‑1 (MQ=60)
                  TCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACG                                                                            <  SRR4302543.1064531/94‑1 (MQ=60)
                  TCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACG                                                                            <  SRR4302543.6990251/94‑1 (MQ=60)
                  CCCCGCATTCAAAATCTTCCCTCGCTTAAAAACCAAGACGCTTCACCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACG                                                                            <  SRR4302543.6990252/94‑1 (MQ=60)
                   CCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGT                                                                           >  SRR4302543.3130724/1‑94 (MQ=60)
                    CCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTG                                                                          >  SRR4302543.6525333/1‑94 (MQ=60)
                    CCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTG                                                                          <  SRR4302543.2397223/94‑1 (MQ=60)
                    CCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTG                                                                          <  SRR4302543.2558567/94‑1 (MQ=60)
                    CCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTG                                                                          <  SRR4302543.3438268/94‑1 (MQ=60)
                     CGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGG                                                                         >  SRR4302543.2533226/1‑94 (MQ=60)
                     CGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGG                                                                         >  SRR4302543.342988/1‑94 (MQ=60)
                      tcaaTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGT                                                                        <  SRR4302543.6776366/90‑1 (MQ=60)
                      GCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGT                                                                        <  SRR4302543.5779278/94‑1 (MQ=60)
                      GCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGT                                                                        >  SRR4302543.3117498/1‑94 (MQ=60)
                      GCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGT                                                                        <  SRR4302543.3184833/94‑1 (MQ=60)
                       CACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTA                                                                       >  SRR4302543.1354272/1‑94 (MQ=60)
                       CACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTA                                                                       >  SRR4302543.3857767/1‑94 (MQ=60)
                       CACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTA                                                                       <  SRR4302543.3289970/94‑1 (MQ=60)
                       CACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTA                                                                       <  SRR4302543.3037383/94‑1 (MQ=60)
                        ACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAA                                                                      >  SRR4302543.2191172/1‑94 (MQ=60)
                        ACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAA                                                                      >  SRR4302543.1144908/1‑94 (MQ=60)
                        ACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAA                                                                      >  SRR4302543.4997246/1‑94 (MQ=60)
                        ACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAA                                                                      >  SRR4302543.3529870/1‑94 (MQ=60)
                         CTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCGATCCCTTGCTTCTGGAAAAACGTGGTAAT                                                                     <  SRR4302543.6601944/94‑1 (MQ=60)
                         CTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAT                                                                     >  SRR4302543.1290949/1‑94 (MQ=60)
                         CTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAT                                                                     <  SRR4302543.5450852/94‑1 (MQ=60)
                         CTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAT                                                                     >  SRR4302543.6815805/1‑94 (MQ=60)
                         CTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAT                                                                     >  SRR4302543.6081101/1‑94 (MQ=60)
                         CTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAT                                                                     >  SRR4302543.3650816/1‑94 (MQ=60)
                         CTCAAAATC‑TTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATAACCAATCCCTTGCTTCTGGAAAAACGTGGTAATA                                                                    >  SRR4302543.5228010/1‑94 (MQ=60)
                          TCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATA                                                                    >  SRR4302543.7313675/1‑94 (MQ=60)
                           CAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAG                                                                   <  SRR4302543.5991757/94‑1 (MQ=60)
                           CAAAATCTTTCCTAGCTTAGAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCACTCCCTTGCTTCTGGAAAAACGTGGTAATAG                                                                   >  SRR4302543.73394/1‑94 (MQ=60)
                            AAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGA                                                                  <  SRR4302543.4436275/94‑1 (MQ=60)
                            AAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGA                                                                  >  SRR4302543.1679917/1‑94 (MQ=60)
                            AAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGA                                                                  <  SRR4302543.5549591/94‑1 (MQ=60)
                              AATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGA                                                                <  SRR4302543.4418097/94‑1 (MQ=60)
                               ATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAA                                                               >  SRR4302543.2173532/1‑94 (MQ=60)
                               ATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAA                                                               >  SRR4302543.7225620/1‑94 (MQ=60)
                               ATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAA                                                               <  SRR4302543.3830634/94‑1 (MQ=60)
                               ATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAA                                                               >  SRR4302543.5919954/1‑94 (MQ=60)
                                TCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAA                                                              <  SRR4302543.401425/94‑1 (MQ=60)
                                TCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAA                                                              >  SRR4302543.7544518/1‑94 (MQ=60)
                                 CTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAG                                                             >  SRR4302543.5466370/1‑94 (MQ=60)
                                 CTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAG                                                             >  SRR4302543.5546472/1‑94 (MQ=60)
                                 CTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAG                                                             >  SRR4302543.7406981/1‑94 (MQ=60)
                                 CTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAG                                                             >  SRR4302543.3134760/1‑94 (MQ=60)
                                  TTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGA                                                            >  SRR4302543.6664436/1‑94 (MQ=60)
                                   TTCCTCGCTTAAAAAACAGGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAG                                                           >  SRR4302543.1768678/1‑94 (MQ=60)
                                   TTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAG                                                           <  SRR4302543.3411671/94‑1 (MQ=60)
                                   TTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAG                                                           >  SRR4302543.1104445/1‑94 (MQ=60)
                                   TTCCTCACTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAG                                                           <  SRR4302543.3757930/94‑1 (MQ=60)
                                    TCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGG                                                          >  SRR4302543.7006957/1‑94 (MQ=60)
                                     CCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGT                                                         >  SRR4302543.4530867/1‑94 (MQ=60)
                                     CCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGT                                                         <  SRR4302543.5770942/94‑1 (MQ=60)
                                     CCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGT                                                         <  SRR4302543.3400895/94‑1 (MQ=60)
                                      CTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTT                                                        >  SRR4302543.3144575/1‑94 (MQ=60)
                                      CTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTT                                                        <  SRR4302543.2838867/94‑1 (MQ=60)
                                      CTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTT                                                        <  SRR4302543.6295977/94‑1 (MQ=60)
                                      CTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTT                                                        >  SRR4302543.2445731/1‑94 (MQ=60)
                                      CTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATACCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTT                                                        >  SRR4302543.7042960/1‑94 (MQ=60)
                                       TCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTA                                                       <  SRR4302543.450650/94‑1 (MQ=60)
                                        CGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAA                                                      >  SRR4302543.45490/1‑94 (MQ=60)
                                         GCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGATAAT                                                     >  SRR4302543.2180882/1‑94 (MQ=60)
                                         GCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTAGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAT                                                     >  SRR4302543.5651644/1‑94 (MQ=60)
                                          CTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATT                                                    >  SRR4302543.3272869/1‑94 (MQ=60)
                                          CTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATT                                                    <  SRR4302543.3488827/94‑1 (MQ=60)
                                          CTTAAAAAACAAGACGCCTTATCATAGAAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATT                                                    <  SRR4302543.1091670/94‑1 (MQ=60)
                                           TTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTT                                                   <  SRR4302543.6092452/94‑1 (MQ=60)
                                           TTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTT                                                   <  SRR4302543.3349591/94‑1 (MQ=60)
                                           TTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTT                                                   >  SRR4302543.1065570/1‑94 (MQ=60)
                                             AAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCA                                                 >  SRR4302543.7532448/1‑94 (MQ=60)
                                              AAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAT                                                >  SRR4302543.4361654/1‑94 (MQ=60)
                                              AAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAT                                                <  SRR4302543.4719772/94‑1 (MQ=60)
                                                AAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTT                                              >  SRR4302543.6724687/1‑94 (MQ=60)
                                                 AACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTG                                             <  SRR4302543.2624159/94‑1 (MQ=60)
                                                 AACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTG                                             >  SRR4302543.7361731/1‑94 (MQ=60)
                                                 AACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTG                                             <  SRR4302543.6493779/94‑1 (MQ=60)
                                                 AACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTG                                             >  SRR4302543.5784661/1‑94 (MQ=60)
                                                 AACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTAATTTG                                             <  SRR4302543.7366460/94‑1 (MQ=60)
                                                  ACAAGACGCCTTATCTTAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGG                                            <  SRR4302543.6970708/94‑1 (MQ=60)
                                                  ACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGG                                            >  SRR4302543.5160951/1‑94 (MQ=60)
                                                  ACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGG                                            <  SRR4302543.6673018/94‑1 (MQ=60)
                                                  ACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGG                                            <  SRR4302543.6694879/94‑1 (MQ=60)
                                                   CAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGC                                           >  SRR4302543.978658/1‑94 (MQ=60)
                                                   CAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGC                                           <  SRR4302543.6338840/94‑1 (MQ=60)
                                                    AAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCA                                          >  SRR4302543.171048/1‑94 (MQ=60)
                                                     AGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAA                                         <  SRR4302543.5629828/94‑1 (MQ=60)
                                                     AGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAA                                         <  SRR4302543.3493728/94‑1 (MQ=60)
                                                     AGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAA                                         >  SRR4302543.7901420/1‑94 (MQ=60)
                                                      GACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAA                                        <  SRR4302543.7912813/94‑1 (MQ=60)
                                                       ACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAG                                       <  SRR4302543.7665493/94‑1 (MQ=60)
                                                       ACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAG                                       <  SRR4302543.6592996/94‑1 (MQ=60)
                                                       ACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAG                                       >  SRR4302543.6615240/1‑94 (MQ=60)
                                                        CGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGG                                      >  SRR4302543.6863092/1‑94 (MQ=60)
                                                        CGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGG                                      >  SRR4302543.6863091/1‑94 (MQ=60)
                                                         GCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGG                                     <  SRR4302543.4525456/94‑1 (MQ=60)
                                                         GCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGG                                     <  SRR4302543.10093/94‑1 (MQ=60)
                                                         GCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGG                                     >  SRR4302543.7548367/1‑94 (MQ=60)
                                                          GCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGA                                    <  SRR4302543.858745/94‑1 (MQ=60)
                                                          CCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGA                                    >  SRR4302543.138397/1‑94 (MQ=60)
                                                          CCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGA                                    >  SRR4302543.4281275/1‑94 (MQ=60)
                                                          CCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGA                                    <  SRR4302543.5041354/94‑1 (MQ=60)
                                                          CCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGA                                    <  SRR4302543.5041355/94‑1 (MQ=60)
                                                           CTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAA                                   >  SRR4302543.3659126/1‑94 (MQ=60)
                                                           CTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAA                                   >  SRR4302543.3260840/1‑94 (MQ=60)
                                                            TTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAG                                  <  SRR4302543.993329/94‑1 (MQ=60)
                                                              ATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTA                                <  SRR4302543.2489726/94‑1 (MQ=60)
                                                              ATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTA                                <  SRR4302543.6869588/94‑1 (MQ=60)
                                                              ATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTA                                >  SRR4302543.6848362/1‑94 (MQ=60)
                                                               TCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTAT                               <  SRR4302543.2819475/94‑1 (MQ=60)
                                                               TCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTAT                               <  SRR4302543.6153389/94‑1 (MQ=60)
                                                                 ATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCA                             <  SRR4302543.72975/94‑1 (MQ=60)
                                                                 ATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCA                             <  SRR4302543.5858745/94‑1 (MQ=60)
                                                                 ATACCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCA                             <  SRR4302543.3888212/94‑1 (MQ=60)
                                                                  TAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCAT                            <  SRR4302543.3777626/94‑1 (MQ=60)
                                                                  TAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCAT                            <  SRR4302543.7627371/94‑1 (MQ=60)
                                                                   AGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATC                           >  SRR4302543.6893052/1‑94 (MQ=60)
                                                                   AGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATC                           >  SRR4302543.1632838/1‑94 (MQ=60)
                                                                     CAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAG                         <  SRR4302543.3856112/94‑1 (MQ=60)
                                                                        CCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAA                      <  SRR4302543.3094751/94‑1 (MQ=60)
                                                                         CAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAA                     >  SRR4302543.2638288/1‑94 (MQ=60)
                                                                         CAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAA                     >  SRR4302543.1990717/1‑94 (MQ=60)
                                                                          AGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAA                    >  SRR4302543.6388209/1‑94 (MQ=60)
                                                                          AGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAA                    >  SRR4302543.3259747/1‑94 (MQ=60)
                                                                          AGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAA                    >  SRR4302543.2032414/1‑94 (MQ=60)
                                                                            CCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATA                  <  SRR4302543.2457549/94‑1 (MQ=60)
                                                                             CTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATAT                 >  SRR4302543.2203302/1‑94 (MQ=60)
                                                                             CTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATAT                 >  SRR4302543.397565/1‑94 (MQ=60)
                                                                             CTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATAT                 >  SRR4302543.397564/1‑94 (MQ=60)
                                                                             CTCTTGATACCCAATCCCTTGCTTCTGAAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATAT                 <  SRR4302543.2982103/94‑1 (MQ=60)
                                                                              TCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATT                <  SRR4302543.4925607/94‑1 (MQ=60)
                                                                              TCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATT                <  SRR4302543.4925608/94‑1 (MQ=60)
                                                                              TCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATT                >  SRR4302543.329451/1‑94 (MQ=60)
                                                                              TCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATT                <  SRR4302543.5192924/94‑1 (MQ=60)
                                                                              TCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATT                >  SRR4302543.4226846/1‑94 (MQ=60)
                                                                               CTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTC               <  SRR4302543.6706024/94‑1 (MQ=60)
                                                                               CTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTC               <  SRR4302543.3799176/94‑1 (MQ=60)
                                                                                TTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCG              >  SRR4302543.7241917/1‑94 (MQ=60)
                                                                                 TGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGC             <  SRR4302543.7836275/94‑1 (MQ=60)
                                                                                   ATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTG           <  SRR4302543.6431938/94‑1 (MQ=60)
                                                                                    TACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGT          <  SRR4302543.6511481/94‑1 (MQ=60)
                                                                                    TACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGT          <  SRR4302543.6511482/94‑1 (MQ=60)
                                                                                       CCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGA       >  SRR4302543.7474619/1‑94 (MQ=60)
                                                                                       CCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGA       <  SRR4302543.5119448/94‑1 (MQ=60)
                                                                                       CCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGA       <  SRR4302543.4459460/94‑1 (MQ=60)
                                                                                        CAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAG      <  SRR4302543.7998571/94‑1 (MQ=60)
                                                                                        CAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAG      >  SRR4302543.5676175/1‑94 (MQ=60)
                                                                                         AATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGG     >  SRR4302543.7378278/1‑94 (MQ=60)
                                                                                         AATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGG     <  SRR4302543.4632354/94‑1 (MQ=60)
                                                                                         AATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGG     >  SRR4302543.2393518/1‑94 (MQ=60)
                                                                                          ATCGCTTGCTTCTGGAAAAACGGGGTAATAGAGAAAGAGGGGAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGT    <  SRR4302543.3426955/94‑1 (MQ=60)
                                                                                          ATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGT    <  SRR4302543.3174475/94‑1 (MQ=60)
                                                                                          ATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTAGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGT    <  SRR4302543.2678503/94‑1 (MQ=60)
                                                                                           TCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTA   <  SRR4302543.2714740/94‑1 (MQ=60)
                                                                                           TCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTA   <  SRR4302543.2714739/94‑1 (MQ=60)
                                                                                            CCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTAT  >  SRR4302543.5381226/1‑94 (MQ=60)
                                                                                            CCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTAT  <  SRR4302543.7079346/94‑1 (MQ=60)
                                                                                            CCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTAT  <  SRR4302543.3295945/94‑1 (MQ=60)
                                                                                            CCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTAT  >  SRR4302543.2693185/1‑94 (MQ=60)
                                                                                            CCCTTGCTTCTGGAAAAACGTAGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTAT  <  SRR4302543.3295944/94‑1 (MQ=60)
                                                                                             |                                                                                            
AGATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCTCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTAT  >  NC_000913/2997884‑2998069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑