Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,997,977	T→C	intergenic (‑64/‑390)	b2865 ← / → b2866	putative lipoprotein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,997,977	0	T	C	100.0%	696.0 / NA	216	intergenic (‑64/‑390)	b2865/b2866	putative lipoprotein/hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (113/103); total (113/103)

Only 100 of 222 total aligned reads displayed.

TTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCTCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGG  >  NC_000913/2997887‑2998066

ttttttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATccct                                                                                         >  1:1376210/1‑93 (MQ=255)

ttttttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATccct                                                                                         >  1:614039/1‑93 (MQ=255)

   tttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGc                                                                                      <  1:3361368/93‑1 (MQ=255)

   tttATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGc                                                                                      >  2:2457969/1‑93 (MQ=255)

   tttATCCAGGCGTCCTGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGc                                                                                      <  2:202653/93‑1 (MQ=255)

     tATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCtt                                                                                    >  2:3267849/1‑93 (MQ=255)

     tATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCtt                                                                                    >  2:2969223/1‑93 (MQ=255)

     tATTCAGGCGTCCCGCACTCAAAATCTTGCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCtt                                                                                    <  1:1360091/93‑1 (MQ=255)

      tttCAGGCGTCCCGCACTCAAAATCTTTACTGGCTGAAAAAACAAGCCGCCGTATCATAGCAGCCAGCCTCTTGATTCCCAATCCCTTGCTTc                                                                                   <  1:755062/92‑1 (MQ=255)

      aTTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTc                                                                                   >  2:3897461/1‑93 (MQ=255)

      aTTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTc                                                                                   <  2:838073/93‑1 (MQ=255)

       ttCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACGAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCt                                                                                  >  1:3302811/1‑93 (MQ=255)

         cAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTgg                                                                                <  1:945763/93‑1 (MQ=255)

          aGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGa                                                                               <  1:4201993/93‑1 (MQ=255)

           ggCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGaa                                                                              >  2:1402164/1‑93 (MQ=255)

             cGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGaaaa                                                                            <  1:863854/93‑1 (MQ=255)

              gTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGaaaaa                                                                           <  1:1656579/93‑1 (MQ=255)

               tCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAc                                                                          >  1:1905938/1‑93 (MQ=255)

                 ccGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGt                                                                        <  1:3196778/93‑1 (MQ=255)

                 ccGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGt                                                                        >  2:453004/1‑93 (MQ=255)

                 ccGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGt                                                                        <  2:158125/93‑1 (MQ=255)

                 ccGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGt                                                                        <  1:1858224/93‑1 (MQ=255)

                  cGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTg                                                                       >  2:3178651/1‑93 (MQ=255)

                   ccACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTgg                                                                      <  1:3678329/92‑1 (MQ=255)

                    cACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGt                                                                     <  1:2331907/93‑1 (MQ=255)

                    cACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGt                                                                     <  2:2946375/93‑1 (MQ=255)

                     aCTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTa                                                                    <  1:2217094/93‑1 (MQ=255)

                       tCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAt                                                                  >  2:2147026/1‑93 (MQ=255)

                       tCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAt                                                                  >  2:3357985/1‑93 (MQ=255)

                       tCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAt                                                                  <  1:1077509/93‑1 (MQ=255)

                        cAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATa                                                                 <  1:1203150/93‑1 (MQ=255)

                        cAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATa                                                                 <  1:795712/93‑1 (MQ=255)

                         aaaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATag                                                                >  2:2170714/1‑93 (MQ=255)

                         aaaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATag                                                                <  1:1459956/93‑1 (MQ=255)

                          aaaTCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATaga                                                               >  1:356779/1‑93 (MQ=255)

                             tCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGaa                                                            >  1:837636/1‑93 (MQ=255)

                             tCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGaa                                                            >  2:3001347/1‑93 (MQ=255)

                              cTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGaaa                                                           <  1:2526950/93‑1 (MQ=255)

                                ttCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAaga                                                         >  2:609783/1‑93 (MQ=255)

                                  ccTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAgg                                                       >  2:2608362/1‑93 (MQ=255)

                                   cTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGt                                                      <  1:4004472/93‑1 (MQ=255)

                                    tCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGtt                                                     >  2:3548500/1‑93 (MQ=255)

                                      gCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTaa                                                   <  2:2357006/93‑1 (MQ=255)

                                      gCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTaa                                                   >  1:1182727/1‑93 (MQ=255)

                                      gCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTaa                                                   <  1:4290276/93‑1 (MQ=255)

                                       cTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATCCCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAt                                                  <  2:2207577/93‑1 (MQ=255)

                                       cTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAt                                                  >  1:2968805/1‑93 (MQ=255)

                                        ttAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAtt                                                 >  1:2486824/1‑93 (MQ=255)

                                        ttAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAtt                                                 <  1:2606922/93‑1 (MQ=255)

                                        ttAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAtt                                                 >  2:1325238/1‑93 (MQ=255)

                                          aaaaaaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTc                                               <  2:1180542/93‑1 (MQ=255)

                                           aaaaaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCa                                              <  2:4207149/93‑1 (MQ=255)

                                            aaaaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAt                                             >  2:3045208/1‑93 (MQ=255)

                                              aaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAttt                                           >  2:264614/1‑93 (MQ=255)

                                              aaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAttt                                           <  2:3943234/93‑1 (MQ=255)

                                              aaCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAttt                                           <  1:1746025/93‑1 (MQ=255)

                                               aCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTg                                          <  1:3525441/93‑1 (MQ=255)

                                               aCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTg                                          <  1:2826319/93‑1 (MQ=255)

                                               aCAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTg                                          >  1:1937141/1‑93 (MQ=255)

                                                cAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTgg                                         >  1:332308/1‑93 (MQ=255)

                                                   gACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCaa                                      >  2:4511359/1‑93 (MQ=255)

                                                   gACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCaa                                      >  1:1118771/1‑93 (MQ=255)

                                                    aCGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCaaa                                     >  2:3516930/1‑93 (MQ=255)

                                                     cGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACTTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAg                                    <  1:4636516/93‑1 (MQ=255)

                                                     cGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAg                                    <  1:2560140/93‑1 (MQ=255)

                                                     cGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAg                                    >  2:4282949/1‑93 (MQ=255)

                                                      gCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGACAAACGTGGTAATAGAGCAAGAGGTTAATTTCATTTGGCAAAgg                                   >  1:1806768/1‑93 (MQ=255)

                                                      gCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAgg                                   >  1:4624380/1‑93 (MQ=255)

                                                        cTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGa                                 <  1:147808/93‑1 (MQ=255)

                                                         ttATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGaa                                >  2:3682892/1‑93 (MQ=255)

                                                            tCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTa                             <  1:1913741/93‑1 (MQ=255)

                                                            tCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTa                             >  1:542361/1‑93 (MQ=255)

                                                               tAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatca                          >  2:4390563/1‑93 (MQ=255)

                                                               tAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatca                          >  1:3430639/1‑93 (MQ=255)

                                                                agcagcCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatcat                         >  1:2417691/1‑93 (MQ=255)

                                                                 gcagcCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatcatc                        >  2:1127890/1‑93 (MQ=255)

                                                                 gcagcCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTatcatc                        <  2:309935/93‑1 (MQ=255)

                                                                   agccagccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAg                      >  2:4019061/1‑93 (MQ=255)

                                                                     ccagccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCa                    >  1:2710318/1‑93 (MQ=255)

                                                                     ccagccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCa                    >  1:3819820/1‑93 (MQ=255)

                                                                      cagccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCaa                   >  2:1057885/1‑93 (MQ=255)

                                                                       agccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCaaa                  >  2:2713000/1‑93 (MQ=255)

                                                                        gccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCaaaa                 <  1:128086/93‑1 (MQ=255)

                                                                        gccTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCaaaa                 >  2:1703443/1‑93 (MQ=255)

                                                                           tctTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAatat              >  1:1104278/1‑93 (MQ=255)

                                                                           tctTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAatat              >  1:726460/1‑93 (MQ=255)

                                                                            ctTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATAtt             <  2:4168253/93‑1 (MQ=255)

                                                                            ctTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATAtt             <  1:234751/93‑1 (MQ=255)

                                                                             ttGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTc            >  2:3183291/1‑93 (MQ=255)

                                                                             ttGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTc            >  2:2472624/1‑93 (MQ=255)

                                                                             ttGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTc            <  2:528340/93‑1 (MQ=255)

                                                                               gATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGc          <  1:4442061/93‑1 (MQ=255)

                                                                                atgcccAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCt         <  1:4323932/90‑1 (MQ=255)

                                                                                    ccAATCCCTTGCTTCTGGAAAAACGTGGCAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTag     >  1:2154723/1‑93 (MQ=255)

                                                                                     cAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTaga    >  2:253865/1‑93 (MQ=255)

                                                                                     cAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTaga    <  2:1234158/93‑1 (MQ=255)

                                                                                     cAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTaga    <  1:2666231/93‑1 (MQ=255)

                                                                                      aaTCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTagag   >  1:1730385/1‑93 (MQ=255)

                                                                                       aTCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAgg  >  1:2265030/1‑93 (MQ=255)

                                                                                       aTCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAgg  >  2:857977/1‑93 (MQ=255)

TTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCTCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGG  >  NC_000913/2997887‑2998066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCTCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTATC  >  NC_000913/2997886‑2998070

ATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCT                                                                                             >  SRR4302535.618307/1‑94 (MQ=60)

ATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCT                                                                                             >  SRR4302535.1574364/1‑94 (MQ=60)

ATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCT                                                                                             >  SRR4302535.1386037/1‑94 (MQ=60)

    TTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCT                                                                                         <  SRR4302535.3384761/94‑1 (MQ=60)

      TATTCAGGCGTCCCGCACTCAAAATCTTGCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTC                                                                                       <  SRR4302535.1369818/94‑1 (MQ=60)

       TTTCAGGCGTCCCGCACTCAAAATCTTTACTGGCTGAAAAAACAAGCCGCCGTATCATAGCAGCCAGCCTCTTGATTCCCAATCCCTTGCTTCT                                                                                      <  SRR4302535.760379/94‑1 (MQ=60)

       ATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACGAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCT                                                                                      >  SRR4302535.3325777/1‑94 (MQ=60)

         TCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGG                                                                                    <  SRR4302535.2227057/94‑1 (MQ=60)

          CAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGA                                                                                   <  SRR4302535.952461/94‑1 (MQ=60)

           AGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAA                                                                                  >  SRR4302535.2726921/1‑94 (MQ=60)

           AGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAA                                                                                  >  SRR4302535.4329775/1‑94 (MQ=60)

           AGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAA                                                                                  >  SRR4302535.4554059/1‑94 (MQ=60)

           AGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAA                                                                                  <  SRR4302535.4230742/94‑1 (MQ=60)

              CGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAA                                                                               <  SRR4302535.869958/94‑1 (MQ=60)

               GTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAC                                                                              <  SRR4302535.742317/94‑1 (MQ=60)

               GTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAC                                                                              <  SRR4302535.1668562/94‑1 (MQ=60)

               GTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAC                                                                              >  SRR4302535.1919655/1‑94 (MQ=60)

               GTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAAC                                                                              <  SRR4302535.816029/94‑1 (MQ=60)

                TCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACG                                                                             <  SRR4302535.1921145/94‑1 (MQ=60)

                  CCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTG                                                                           <  SRR4302535.3218898/94‑1 (MQ=60)

                  CCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTG                                                                           <  SRR4302535.1871624/94‑1 (MQ=60)

                    CCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGT                                                                         <  SRR4302535.3703788/94‑1 (MQ=60)

                     CACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTA                                                                        <  SRR4302535.1249124/94‑1 (MQ=60)

                     CACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTA                                                                        <  SRR4302535.2348586/94‑1 (MQ=60)

                      ACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAA                                                                       <  SRR4302535.2232875/94‑1 (MQ=60)

                       CTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAAT                                                                      >  SRR4302535.54405/1‑94 (MQ=60)

                        TCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATA                                                                     <  SRR4302535.1085175/94‑1 (MQ=60)

                        TCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATA                                                                     <  SRR4302535.3391643/94‑1 (MQ=60)

                         CAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAG                                                                    <  SRR4302535.1211787/94‑1 (MQ=60)

                         CAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAG                                                                    <  SRR4302535.801298/94‑1 (MQ=60)

                          AAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGA                                                                   >  SRR4302535.359244/1‑94 (MQ=60)

                          AAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGA                                                                   <  SRR4302535.1470415/94‑1 (MQ=60)

                           AAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAG                                                                  <  SRR4302535.94101/94‑1 (MQ=60)

                           AAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAG                                                                  <  SRR4302535.3805092/94‑1 (MQ=60)

                           AAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAG                                                                  >  SRR4302535.1632782/1‑94 (MQ=60)

                           AAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAG                                                                  <  SRR4302535.2766121/94‑1 (MQ=60)

                            AATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGA                                                                 <  SRR4302535.553583/94‑1 (MQ=60)

                            AATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGA                                                                 >  SRR4302535.1711319/1‑94 (MQ=60)

                            AATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGA                                                                 >  SRR4302535.68198/1‑94 (MQ=60)

                             ATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAA                                                                >  SRR4302535.843516/1‑94 (MQ=60)

                              TCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAA                                                               <  SRR4302535.148291/94‑1 (MQ=60)

                               CTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAG                                                              <  SRR4302535.2420199/94‑1 (MQ=60)

                               CTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAG                                                              <  SRR4302535.2545153/94‑1 (MQ=60)

                               CTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAG                                                              <  SRR4302535.1162982/94‑1 (MQ=60)

                                  TCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGG                                                           <  SRR4302535.2150919/94‑1 (MQ=60)

                                  TCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGG                                                           <  SRR4302535.1818678/94‑1 (MQ=60)

                                   CCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGT                                                          >  SRR4302535.1824278/1‑94 (MQ=60)

                                    CTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTT                                                         <  SRR4302535.4031867/94‑1 (MQ=60)

                                    CTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTT                                                         <  SRR4302535.88166/94‑1 (MQ=60)

                                      CGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAA                                                       >  SRR4302535.1191174/1‑94 (MQ=60)

                                       GCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAT                                                      <  SRR4302535.4319617/94‑1 (MQ=60)

                                       GCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAAT                                                      >  SRR4302535.2989637/1‑94 (MQ=60)

                                        CTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATT                                                     <  SRR4302535.4291021/94‑1 (MQ=60)

                                        CTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATT                                                     >  SRR4302535.4642244/1‑94 (MQ=60)

                                        CTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATT                                                     >  SRR4302535.3377077/1‑94 (MQ=60)

                                        CTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATT                                                     >  SRR4302535.2504755/1‑94 (MQ=60)

                                         TTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTT                                                    <  SRR4302535.2625629/94‑1 (MQ=60)

                                           AAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCA                                                  <  SRR4302535.1302443/94‑1 (MQ=60)

                                            AAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAT                                                 >  SRR4302535.956052/1‑94 (MQ=60)

                                            AAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCAT                                                 >  SRR4302535.1197420/1‑94 (MQ=60)

                                               AACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTG                                              <  SRR4302535.1758658/94‑1 (MQ=60)

                                               AACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTG                                              >  SRR4302535.1951087/1‑94 (MQ=60)

                                               AACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTG                                              <  SRR4302535.1376037/94‑1 (MQ=60)

                                               AACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTG                                              <  SRR4302535.3328881/94‑1 (MQ=60)

                                               AACAAGACCCCTTATCATACCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTG                                              <  SRR4302535.352500/94‑1 (MQ=60)

                                                ACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGG                                             <  SRR4302535.2488298/94‑1 (MQ=60)

                                                ACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGG                                             <  SRR4302535.3549922/94‑1 (MQ=60)

                                                ACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGG                                             >  SRR4302535.334608/1‑94 (MQ=60)

                                                ACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGG                                             <  SRR4302535.2846379/94‑1 (MQ=60)

                                                  AAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCA                                           <  SRR4302535.3496412/94‑1 (MQ=60)

                                                  AAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCA                                           <  SRR4302535.4660681/94‑1 (MQ=60)

                                                   AGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAA                                          >  SRR4302535.1126752/1‑94 (MQ=60)

                                                     ACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAG                                        <  SRR4302535.676678/94‑1 (MQ=60)

                                                      CGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGACAAACGTGGTAATAGAGCAAGAGGTTAATTTCATTTGGCAAAGG                                       >  SRR4302535.1819821/1‑94 (MQ=60)

                                                      CGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACTTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGG                                       <  SRR4302535.4667964/94‑1 (MQ=60)

                                                      CGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGG                                       >  SRR4302535.3042838/1‑94 (MQ=60)

                                                      CGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGG                                       >  SRR4302535.1942642/1‑94 (MQ=60)

                                                      CGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGG                                       >  SRR4302535.2176219/1‑94 (MQ=60)

                                                      CGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGG                                       >  SRR4302535.4655782/1‑94 (MQ=60)

                                                      CGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGG                                       <  SRR4302535.2578571/94‑1 (MQ=60)

                                                       GCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGG                                      <  SRR4302535.3937859/94‑1 (MQ=60)

                                                       GCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGG                                      >  SRR4302535.2362526/1‑94 (MQ=60)

                                                         CTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAA                                    <  SRR4302535.148841/94‑1 (MQ=60)

                                                         CTTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAA                                    <  SRR4302535.250912/94‑1 (MQ=60)

                                                          TTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAG                                   <  SRR4302535.778477/94‑1 (MQ=60)

                                                          TTATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAG                                   >  SRR4302535.1442124/1‑94 (MQ=60)

                                                            ATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTA                                 <  SRR4302535.3123345/94‑1 (MQ=60)

                                                            ATCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTA                                 >  SRR4302535.546150/1‑94 (MQ=60)

                                                             TCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTAT                                <  SRR4302535.1927534/94‑1 (MQ=60)

                                                             TCATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGCTAATTTCATTTGGCAAAGGGAAGTAT                                >  SRR4302535.126735/1‑94 (MQ=60)

                                                               ATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCA                              >  SRR4302535.2309996/1‑94 (MQ=60)

                                                               ATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCA                              <  SRR4302535.2860615/94‑1 (MQ=60)

                                                               ATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCA                              >  SRR4302535.4437358/1‑94 (MQ=60)

                                                               ATAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCA                              >  SRR4302535.3454481/1‑94 (MQ=60)

                                                                TAGCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCAT                             >  SRR4302535.2435094/1‑94 (MQ=60)

                                                                  GCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCGTCA                           <  SRR4302535.2365510/94‑1 (MQ=60)

                                                                  GCAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCA                           <  SRR4302535.1125611/94‑1 (MQ=60)

                                                                   CAGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAG                          >  SRR4302535.3869479/1‑94 (MQ=60)

                                                                    AGCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGC                         >  SRR4302535.4178929/1‑94 (MQ=60)

                                                                     GCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCA                        <  SRR4302535.3224226/94‑1 (MQ=60)

                                                                     GCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCA                        >  SRR4302535.3846176/1‑94 (MQ=60)

                                                                     GCCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCA                        >  SRR4302535.2729690/1‑94 (MQ=60)

                                                                      CCAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAA                       >  SRR4302535.3568713/1‑94 (MQ=60)

                                                                       CAGCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAA                      >  SRR4302535.2624427/1‑94 (MQ=60)

                                                                         GCCTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAAT                    <  SRR4302535.128990/94‑1 (MQ=60)

                                                                           CTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATAT                  <  SRR4302535.1828827/94‑1 (MQ=60)

                                                                           CTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATAT                  >  SRR4302535.2578530/1‑94 (MQ=60)

                                                                           CTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATAT                  >  SRR4302535.731562/1‑94 (MQ=60)

                                                                           CTCTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATAT                  >  SRR4302535.1112168/1‑94 (MQ=60)

                                                                             CTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTC                >  SRR4302535.1881526/1‑94 (MQ=60)

                                                                             CTTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTC                <  SRR4302535.236373/94‑1 (MQ=60)

                                                                              TTGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCG               <  SRR4302535.2239112/94‑1 (MQ=60)

                                                                               TGATACCCAATCCCTTGCTTCTGGAAAAACGTGTTAATAGAGAAAGAGGTTAATTTCATTTGGCGAAGGGAAGTATCATCAGCAAAATATTCGC              <  SRR4302535.264524/94‑1 (MQ=60)

                                                                               TGATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGC              >  SRR4302535.1087410/1‑94 (MQ=60)

                                                                                GATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCT             <  SRR4302535.4472521/94‑1 (MQ=60)

                                                                                GATACCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCT             <  SRR4302535.3650187/94‑1 (MQ=60)

                                                                                 ATGCCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTG            <  SRR4302535.4353509/94‑1 (MQ=60)

                                                                                    CCCAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAG         >  SRR4302535.853097/1‑94 (MQ=60)

                                                                                    CCCAATCCCTTGCTTCTGGAAAAACGTGGCAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAG         >  SRR4302535.2170207/1‑94 (MQ=60)

                                                                                      CAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAG       >  SRR4302535.1742896/1‑94 (MQ=60)

                                                                                      CAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAG       >  SRR4302535.1742895/1‑94 (MQ=60)

                                                                                      CAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAG       <  SRR4302535.2685318/94‑1 (MQ=60)

                                                                                      AAATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAG       <  SRR4302535.2685317/94‑1 (MQ=60)

                                                                                       AATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGG      >  SRR4302535.2281171/1‑94 (MQ=60)

                                                                                        ATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGT     >  SRR4302535.2420077/1‑94 (MQ=60)

                                                                                        ATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGT     >  SRR4302535.2432813/1‑94 (MQ=60)

                                                                                        ATCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGT     >  SRR4302535.4651705/1‑94 (MQ=60)

                                                                                         TCCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTA    >  SRR4302535.292682/1‑94 (MQ=60)

                                                                                          CCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTAT   <  SRR4302535.1144046/94‑1 (MQ=60)

                                                                                          CCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTAT   >  SRR4302535.914386/1‑94 (MQ=60)

                                                                                          CCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTAT   <  SRR4302535.2450500/94‑1 (MQ=60)

                                                                                          CCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTAT   >  SRR4302535.408874/1‑94 (MQ=60)

                                                                                          CCCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATGTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTAT   >  SRR4302535.3320449/1‑94 (MQ=60)

                                                                                           CCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTATC  >  SRR4302535.4705028/1‑94 (MQ=60)

                                                                                           CCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTATC  >  SRR4302535.765551/1‑94 (MQ=60)

ATTTTTTATTCAGGCGTCCCGCACTCAAAATCTTTCCTCGCTTAAAAAACAAGACGCCTTATCATAGCAGCCAGCCTCTTGATACCCAATCTCTTGCTTCTGGAAAAACGTGGTAATAGAGAAAGAGGTTAATTTCATTTGGCAAAGGGAAGTATCATCAGCAAAATATTCGCTGTAGAGGTATC  >  NC_000913/2997886‑2998070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`