Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,004,502 T→C R49R (CGT→CGC)  ygeW → putative carbamoyl transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,004,5020TC99.5% 573.0 / NA 186R49R (CGT→CGC) ygeWputative carbamoyl transferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (107/78);  minor base G (1/0);  total (108/78)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 198 total aligned reads displayed.

AGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGC  >  NC_000913/3004412‑3004589
                                                                                          |                                                                                       
agcaTTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCAc                                                                                       >  1:1205067/1‑93 (MQ=255)
   aTTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCcacccgcacccg                                                                                    >  2:975745/1‑93 (MQ=255)
    ttAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTAATTCCGTATTCCGCGACAACTCCacccgcacccgc                                                                                   >  2:1446524/1‑93 (MQ=255)
    ttAAAAGCACTGCGTGCTAAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCacccgcacccgc                                                                                   >  1:373572/1‑93 (MQ=255)
     tAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCt                                                                                  <  2:2654910/93‑1 (MQ=255)
       aaaGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTtc                                                                                >  2:804237/1‑93 (MQ=255)
        aaGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTtct                                                                               >  2:4207109/1‑93 (MQ=255)
             cTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTAt                                                                          <  1:1702666/93‑1 (MQ=255)
             cTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTAt                                                                          <  2:1915475/93‑1 (MQ=255)
              tGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATg                                                                         >  1:3500041/1‑93 (MQ=255)
                cGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCt                                                                       <  2:1207715/93‑1 (MQ=255)
                cGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCt                                                                       <  1:363265/93‑1 (MQ=255)
                  tGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTc                                                                     <  2:577270/93‑1 (MQ=255)
                  tGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTc                                                                     >  1:4049575/1‑93 (MQ=255)
                      gAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCcgcg                                                                 >  1:155615/1‑93 (MQ=255)
                       aaaaCATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCgcgc                                                                >  2:1294683/1‑93 (MQ=255)
                         aaCATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCtt                                                              >  2:1269308/1‑93 (MQ=255)
                          aCATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTa                                                             <  1:3940910/93‑1 (MQ=255)
                          aCATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTa                                                             >  1:3863610/1‑93 (MQ=255)
                           cATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTaa                                                            >  2:900051/1‑93 (MQ=255)
                            aTCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAAc                                                           <  2:2198077/93‑1 (MQ=255)
                               tcAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTg                                                        >  2:2979387/1‑93 (MQ=255)
                               tcAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTg                                                        >  1:2703085/1‑93 (MQ=255)
                                 aaCCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCt                                                      >  2:3590818/1‑93 (MQ=255)
                                  aCCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTc                                                     <  1:1047788/93‑1 (MQ=255)
                                  aCCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTc                                                     <  1:2149070/93‑1 (MQ=255)
                                  aCCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCAACGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTc                                                     >  2:2624325/1‑93 (MQ=255)
                                   ccAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCg                                                    <  2:405948/93‑1 (MQ=255)
                                    cAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCgg                                                   >  1:3287191/1‑93 (MQ=255)
                                    cAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCgg                                                   >  1:1874051/1‑93 (MQ=255)
                                    cAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCgg                                                   >  2:412048/1‑93 (MQ=255)
                                     aaaGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGc                                                  >  1:3039478/1‑93 (MQ=255)
                                       aGTCTTTAATAGTGGATTAGGTATTTCCGCATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCt                                                >  2:2032892/1‑93 (MQ=255)
                                        gTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCCCCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCtt                                               <  2:4283893/93‑1 (MQ=255)
                                        gTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCtt                                               <  1:3574400/93‑1 (MQ=255)
                                        gTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCtt                                               >  1:2266062/1‑93 (MQ=255)
                                        gTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCtt                                               >  2:2764260/1‑93 (MQ=255)
                                        gTCTTTAATAGGGGATTAGGTATTTCCGTATTCCGAGACAACTCCACTCGGACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCtt                                               >  2:635764/1‑93 (MQ=255)
                                         tCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTg                                              >  2:223506/1‑93 (MQ=255)
                                         tCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTg                                              >  2:2295941/1‑93 (MQ=255)
                                          cTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGTTTAAACTGCTCGGCCTTGc                                             >  2:3317540/1‑93 (MQ=255)
                                          cTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGc                                             <  2:3236507/93‑1 (MQ=255)
                                          cTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGc                                             >  1:54234/1‑93 (MQ=255)
                                           tttAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGca                                            <  1:259736/93‑1 (MQ=255)
                                           tttAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGca                                            >  2:3496720/1‑93 (MQ=255)
                                            ttAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGcac                                           >  2:2577186/1‑93 (MQ=255)
                                             tAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGcaca                                          >  1:1577321/1‑93 (MQ=255)
                                               aTAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCacaac                                        <  1:2352594/93‑1 (MQ=255)
                                                tAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCacaaca                                       >  2:2059897/1‑93 (MQ=255)
                                                 aGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCAcaacaa                                      <  2:1105055/93‑1 (MQ=255)
                                                  gTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAg                                     >  1:3234770/1‑93 (MQ=255)
                                                  gTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAg                                     >  1:3477068/1‑93 (MQ=255)
                                                  gTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAg                                     <  2:1602982/93‑1 (MQ=255)
                                                    ggATTAGGTATTTCCGTATTCCGCGACAACTCCTCCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGAt                                   <  1:4555262/93‑1 (MQ=255)
                                                     gATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGAtc                                  >  1:1016228/1‑93 (MQ=255)
                                                       ttAGGTATTTCCTTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTAGGCTTCCGCGCTTAACCTGCTCGGCCTTGCAAAACAAGAtctc                                <  1:3094687/93‑1 (MQ=255)
                                                       ttAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGAtctc                                <  1:1135861/93‑1 (MQ=255)
                                                       ttAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGAtctc                                >  1:705631/1‑93 (MQ=255)
                                                        tAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTcg                               >  2:470811/1‑93 (MQ=255)
                                                         aGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTcga                              >  1:4408805/1‑93 (MQ=255)
                                                         aGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTcga                              <  2:2692699/93‑1 (MQ=255)
                                                          ggTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTcgac                             >  1:3972732/1‑93 (MQ=255)
                                                          ggTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAAATCTcgac                             <  2:4576322/93‑1 (MQ=255)
                                                           gTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTcgacg                            >  2:1507089/1‑93 (MQ=255)
                                                            tATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTcgacga                           <  2:1967335/93‑1 (MQ=255)
                                                             aTTTCCGTATTCCGCGACAACTCCGCCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGaa                          <  1:2659704/93‑1 (MQ=255)
                                                             aTTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGaa                          <  1:4487357/93‑1 (MQ=255)
                                                             aTTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGaa                          >  2:1839657/1‑93 (MQ=255)
                                                             aTTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGaa                          >  1:1753638/1‑93 (MQ=255)
                                                              tttCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAg                         >  1:289394/1‑93 (MQ=255)
                                                              tttCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAg                         <  2:681430/93‑1 (MQ=255)
                                                              tttCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAg                         >  1:465775/1‑93 (MQ=255)
                                                              ttgccGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAg                         <  2:4490060/90‑1 (MQ=255)
                                                               ttCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAgg                        >  1:4380844/1‑93 (MQ=255)
                                                               ttCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAgg                        <  2:1681009/93‑1 (MQ=255)
                                                               ttCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAgg                        >  1:500549/1‑93 (MQ=255)
                                                                tCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGc                       <  2:3758488/93‑1 (MQ=255)
                                                                   gTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCaaa                    <  1:2121387/93‑1 (MQ=255)
                                                                   gTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCaaa                    <  1:3756462/93‑1 (MQ=255)
                                                                     aTTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAAta                  >  1:2104024/1‑92 (MQ=255)
                                                                     aTTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATc                  >  1:4190142/1‑93 (MQ=255)
                                                                     aTTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATc                  >  2:4355042/1‑93 (MQ=255)
                                                                     aTTCCGCGACAACACCATCCGCACCTGCTTCTCTTATGCTTCCGACCTTACCCTGCTCGGCCTTGCACAAGCAGATCTCGACGAAGGCAACTc                  >  2:1205826/1‑93 (MQ=255)
                                                                      ttCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACACCAAGACCTCGACGAAGGCAAATca                 >  2:2842392/1‑93 (MQ=255)
                                                                       tCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATcac                <  2:3082368/93‑1 (MQ=255)
                                                                        ccGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATcaca               <  2:2884124/93‑1 (MQ=255)
                                                                         cgcgACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACaa              <  2:3922032/93‑1 (MQ=255)
                                                                         cgcgACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACaa              <  1:2562583/93‑1 (MQ=255)
                                                                          gcgACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACaaa             >  2:597630/1‑93 (MQ=255)
                                                                           cgACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAAt            <  1:2540830/93‑1 (MQ=255)
                                                                           cgACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAAt            <  1:979931/93‑1 (MQ=255)
                                                                              cAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGc         >  1:911128/1‑93 (MQ=255)
                                                                              cAACCCCCCCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGc         <  2:2967462/93‑1 (MQ=255)
                                                                               aaCTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCt        >  2:1370918/1‑93 (MQ=255)
                                                                                 cTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCa      <  2:2487526/93‑1 (MQ=255)
                                                                                  tCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCCCTCAc     >  1:611671/1‑93 (MQ=255)
                                                                                   ccACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACg    <  1:3135346/93‑1 (MQ=255)
                                                                                   ccACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACg    <  1:4611390/93‑1 (MQ=255)
                                                                                   ccACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACg    >  2:2972996/1‑93 (MQ=255)
                                                                                    cacccgcacccgCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACgg   <  2:1152870/93‑1 (MQ=255)
                                                                                          |                                                                                       
AGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGC  >  NC_000913/3004412‑3004589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACC  >  NC_000913/3004409‑3004595
                                                                                             |                                                                                             
CGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGC                                                                                               >  SRR4302535.2909072/1‑94 (MQ=60)
  CAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCAC                                                                                             >  SRR4302535.1213723/1‑94 (MQ=60)
      ATTAAAAGCACTGCGTGCTAAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGC                                                                                         >  SRR4302535.376158/1‑94 (MQ=60)
         AAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTC                                                                                      >  SRR4302535.2577628/1‑94 (MQ=60)
              CACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTA                                                                                 >  SRR4302535.4652059/1‑94 (MQ=60)
              CACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTA                                                                                 >  SRR4302535.3033317/1‑94 (MQ=60)
              CACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTA                                                                                 >  SRR4302535.3810421/1‑94 (MQ=60)
                CTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATG                                                                               <  SRR4302535.1714975/94‑1 (MQ=60)
                CTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATG                                                                               >  SRR4302535.3524375/1‑94 (MQ=60)
                 TGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGC                                                                              >  SRR4302535.236598/1‑94 (MQ=60)
                   CGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTT                                                                            <  SRR4302535.365769/94‑1 (MQ=60)
                    GTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTC                                                                           <  SRR4302535.4594517/94‑1 (MQ=60)
                    GTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTC                                                                           >  SRR4302535.4077299/1‑94 (MQ=60)
                    GTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTC                                                                           >  SRR4302535.1917534/1‑94 (MQ=60)
                      GCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCG                                                                         <  SRR4302535.1728021/94‑1 (MQ=60)
                       CTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGC                                                                        >  SRR4302535.4701602/1‑94 (MQ=60)
                       CTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGC                                                                        >  SRR4302535.3290328/1‑94 (MQ=60)
                        TGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCG                                                                       >  SRR4302535.156717/1‑94 (MQ=60)
                         GAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGC                                                                      <  SRR4302535.928424/94‑1 (MQ=60)
                         GAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGC                                                                      >  SRR4302535.4008665/1‑94 (MQ=60)
                          AAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCT                                                                     >  SRR4302535.2682987/1‑94 (MQ=60)
                          AAAACAACTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGAGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCT                                                                     <  SRR4302535.2158734/94‑1 (MQ=60)
                           AAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTT                                                                    >  SRR4302535.1584119/1‑94 (MQ=60)
                            AACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTA                                                                   >  SRR4302535.3890190/1‑94 (MQ=60)
                             ACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAA                                                                  <  SRR4302535.3967813/94‑1 (MQ=60)
                               ATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACC                                                                >  SRR4302535.3222430/1‑94 (MQ=60)
                               ATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTCACGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACC                                                                <  SRR4302535.3143436/94‑1 (MQ=60)
                                 CTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTG                                                              >  SRR4302535.2722397/1‑94 (MQ=60)
                                  TCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGC                                                             <  SRR4302535.1617609/94‑1 (MQ=60)
                                    AACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTC                                                           <  SRR4302535.3153609/94‑1 (MQ=60)
                                    AACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTC                                                           <  SRR4302535.441566/94‑1 (MQ=60)
                                     ACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCG                                                          <  SRR4302535.1055218/94‑1 (MQ=60)
                                     ACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCG                                                          <  SRR4302535.2164525/94‑1 (MQ=60)
                                      CCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACTTGCTCGG                                                         >  SRR4302535.2862924/1‑94 (MQ=60)
                                      CCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGG                                                         >  SRR4302535.1887553/1‑94 (MQ=60)
                                      CCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGG                                                         >  SRR4302535.3310044/1‑94 (MQ=60)
                                       CAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGC                                                        >  SRR4302535.3060765/1‑94 (MQ=60)
                                          AGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTT                                                     >  SRR4302535.2282211/1‑94 (MQ=60)
                                           GTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTG                                                    >  SRR4302535.3077485/1‑94 (MQ=60)
                                           GTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTG                                                    <  SRR4302535.3599181/94‑1 (MQ=60)
                                           GTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTG                                                    >  SRR4302535.3513928/1‑94 (MQ=60)
                                            TCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGC                                                   >  SRR4302535.54631/1‑94 (MQ=60)
                                              TTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCAC                                                 <  SRR4302535.261535/94‑1 (MQ=60)
                                               TTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACA                                                >  SRR4302535.1588704/1‑94 (MQ=60)
                                                 AATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAAC                                              >  SRR4302535.3964257/1‑94 (MQ=60)
                                                 AATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAAC                                              >  SRR4302535.874097/1‑94 (MQ=60)
                                                 AATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAAC                                              >  SRR4302535.567598/1‑94 (MQ=60)
                                                  ATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACA                                             <  SRR4302535.2369459/94‑1 (MQ=60)
                                                    AGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAG                                           >  SRR4302535.3726822/1‑94 (MQ=60)
                                                    AGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAG                                           >  SRR4302535.3501232/1‑94 (MQ=60)
                                                    AGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAG                                           >  SRR4302535.3257219/1‑94 (MQ=60)
                                                       GGATTAGGTATTTCCGTATTCCGCGACAACTCCTCCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATC                                        <  SRR4302535.4586376/94‑1 (MQ=60)
                                                       GGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATC                                        >  SRR4302535.1023450/1‑94 (MQ=60)
                                                         ATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTC                                      <  SRR4302535.2167739/94‑1 (MQ=60)
                                                         ATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTC                                      >  SRR4302535.710587/1‑94 (MQ=60)
                                                          TTAGGTATTTCCTTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTAGGCTTCCGCGCTTAACCTGCTCGGCCTTGCAAAACAAGATCTCG                                     <  SRR4302535.3116237/94‑1 (MQ=60)
                                                          TTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCG                                     <  SRR4302535.1143961/94‑1 (MQ=60)
                                                          TTAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCG                                     <  SRR4302535.3980401/94‑1 (MQ=60)
                                                           TAGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGA                                    >  SRR4302535.4438976/1‑94 (MQ=60)
                                                            AGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGAC                                   >  SRR4302535.3999869/1‑94 (MQ=60)
                                                            AGGTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGAC                                   >  SRR4302535.2634431/1‑94 (MQ=60)
                                                              GTATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGA                                 >  SRR4302535.4344150/1‑94 (MQ=60)
                                                               TATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAA                                >  SRR4302535.1766309/1‑94 (MQ=60)
                                                                ATTTCCGTATTCCGCGACAACTCCGCCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAG                               <  SRR4302535.2678757/94‑1 (MQ=60)
                                                                ATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAG                               >  SRR4302535.469034/1‑94 (MQ=60)
                                                                ATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAG                               >  SRR4302535.291419/1‑94 (MQ=60)
                                                                ATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAG                               <  SRR4302535.4518163/94‑1 (MQ=60)
                                                                ATTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAG                               >  SRR4302535.3495857/1‑94 (MQ=60)
                                                                 TTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGG                              >  SRR4302535.504054/1‑94 (MQ=60)
                                                                 TTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGG                              <  SRR4302535.4537309/94‑1 (MQ=60)
                                                                 TTTCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGG                              >  SRR4302535.4410817/1‑94 (MQ=60)
                                                                   TCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCA                            >  SRR4302535.2599480/1‑94 (MQ=60)
                                                                   TCCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCA                            >  SRR4302535.3587323/1‑94 (MQ=60)
                                                                    CCGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAA                           >  SRR4302535.1135869/1‑94 (MQ=60)
                                                                     CGTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAA                          >  SRR4302535.4513394/1‑94 (MQ=60)
                                                                      GTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAAT                         <  SRR4302535.3782443/94‑1 (MQ=60)
                                                                      GTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAAT                         >  SRR4302535.52898/1‑94 (MQ=60)
                                                                      GTATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAAT                         <  SRR4302535.2136684/94‑1 (MQ=60)
                                                                       TATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATC                        >  SRR4302535.4218819/1‑94 (MQ=60)
                                                                       TATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATC                        >  SRR4302535.4111333/1‑94 (MQ=60)
                                                                       TATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATC                        >  SRR4302535.2119198/1‑94 (MQ=60)
                                                                       TATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATA                        >  SRR4302535.2119197/1‑94 (MQ=60)
                                                                        ATTCCGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCA                       <  SRR4302535.365352/94‑1 (MQ=60)
                                                                            CGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAA                   <  SRR4302535.2581029/94‑1 (MQ=60)
                                                                            CGCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAA                   <  SRR4302535.3780722/94‑1 (MQ=60)
                                                                             GCGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAAT                  <  SRR4302535.250410/94‑1 (MQ=60)
                                                                              CGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATC                 <  SRR4302535.2559131/94‑1 (MQ=60)
                                                                              CGACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATC                 <  SRR4302535.986895/94‑1 (MQ=60)
                                                                               GACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCG                <  SRR4302535.698052/94‑1 (MQ=60)
                                                                               GACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCG                >  SRR4302535.1881223/1‑94 (MQ=60)
                                                                                ACAACTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGC               >  SRR4302535.917606/1‑94 (MQ=60)
                                                                                    CTCCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCCCTCAC           >  SRR4302535.615929/1‑94 (MQ=60)
                                                                                      CCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGG         <  SRR4302535.4642716/94‑1 (MQ=60)
                                                                                      CCACCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGG         <  SRR4302535.3157170/94‑1 (MQ=60)
                                                                                       CCCCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGC        <  SRR4302535.1197736/94‑1 (MQ=60)
                                                                                        CCCCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCG       <  SRR4302535.1314243/94‑1 (MQ=60)
                                                                                          CCGCACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCCTGCACAACAAGATCTCGACCAATGCAAATCACAACGCGCTCACGGCGAA     >  SRR4302535.899160/1‑94 (MQ=60)
                                                                                             CACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACG  >  SRR4302535.3142072/1‑94 (MQ=60)
                                                                                             CACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACC  <  SRR4302535.360840/94‑1 (MQ=60)
                                                                                             |                                                                                             
CGCAGCATTAAAAGCACTGCGTGCTGAAAACATCTCAACCAAAGTCTTTAATAGTGGATTAGGTATTTCCGTATTCCGCGACAACTCCACCCGTACCCGCTTCTCTTATGCTTCCGCGCTTAACCTGCTCGGCCTTGCACAACAAGATCTCGACGAAGGCAAATCACAAATCGCTCACGGCGAAACC  >  NC_000913/3004409‑3004595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑