Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,091,676 |
A→G |
Q53R (CAG→CGG) |
yqgF → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,091,676 | 0 | A | G | 100.0%
| 494.0
/ NA
| 156 | Q53R (CAG→CGG) | yqgF | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (59/97); total (59/97) |
Only 100 of 169 total aligned reads displayed.
CCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCAGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTA > NC_000913/3091589‑3091765
|
ccGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑Cgg < 2:294316/93‑1 (MQ=255)
cGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGa < 1:2732450/93‑1 (MQ=255)
cGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGa < 1:2213304/93‑1 (MQ=255)
cACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGa < 2:1583959/93‑1 (MQ=255)
cGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAat < 1:3004714/93‑1 (MQ=255)
gCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGG‑CGGACGAAatc > 1:2066404/1‑93 (MQ=255)
gCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGGCGAAatc > 2:4309706/1‑93 (MQ=255)
cTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAatca < 1:4363038/93‑1 (MQ=255)
tCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGG‑CGGGCGaaaaaat > 2:2747067/1‑89 (MQ=255)
cGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAatcatc < 2:4115501/93‑1 (MQ=255)
cGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAatcatc < 1:1661226/93‑1 (MQ=255)
gCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGG‑CCGGCGAAaacatac > 2:979725/1‑91 (MQ=255)
cccTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCAtcgt < 1:154423/93‑1 (MQ=255)
ccTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGG‑CGGGCGAAAACAtcgtc > 2:4444201/1‑93 (MQ=255)
cTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCGCGGGGGAAA‑CAtcgtcg > 2:2643953/1‑93 (MQ=255)
cTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCAtcgtcg > 1:477540/1‑93 (MQ=255)
tttGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCgg < 2:3032079/93‑1 (MQ=255)
ttGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAAACATCGTCGGt > 1:4367397/1‑93 (MQ=255)
tGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGtt < 2:2571930/93‑1 (MQ=255)
cTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGG‑CGGGCGAAATTATCGTCGGGTTgt > 2:46072/1‑92 (MQ=255)
cTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGc < 1:3814212/93‑1 (MQ=255)
cTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAAACATCGTCGGGTTGc > 1:1937370/1‑93 (MQ=255)
cTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CCGGCGAAATCATCGTCGGGTTGc > 1:1046809/1‑93 (MQ=255)
tGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGGCGAAAACATCGTCGGGTTGcc > 1:916071/1‑93 (MQ=255)
tGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGcc < 2:935056/93‑1 (MQ=255)
gCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGG‑CGGGCGAAATCATCGTCGGGTTGCCg > 1:680709/1‑93 (MQ=255)
cAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGc < 1:1802472/93‑1 (MQ=255)
aTTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGGCGCAATTATCGTCGGTTTTGCGCTg > 2:4095319/1‑93 (MQ=255)
aTTAAAGCACAGGACGGCACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGGCGGCATTATTGTCGGTTTGgcgccg > 1:738147/1‑91 (MQ=255)
tAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGG‑CGGGCGGAATCATCGTCGGTTTGCCGCTgca > 2:2628531/1‑91 (MQ=255)
tAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGaa < 1:126144/93‑1 (MQ=255)
aaGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAata < 1:1118193/93‑1 (MQ=255)
aaGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAata < 2:3146704/93‑1 (MQ=255)
aaGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAata < 1:2699069/93‑1 (MQ=255)
aGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAatat < 2:3520396/93‑1 (MQ=255)
gCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGGCGCCGGATATg > 1:1796106/1‑93 (MQ=255)
gCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATg < 2:2162276/93‑1 (MQ=255)
gCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGGCGGTTTGCCGCTGAATATg > 2:2187774/1‑93 (MQ=255)
acaGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGa < 1:1458140/93‑1 (MQ=255)
caGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑c < 1:4595661/93‑1 (MQ=255)
aGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑Cg < 2:3951199/93‑1 (MQ=255)
aGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑Cg < 2:1659042/93‑1 (MQ=255)
gACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGc < 2:1962006/93‑1 (MQ=255)
gACGGTACGCAGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGc < 1:4240283/93‑1 (MQ=255)
aCGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCa < 1:505164/93‑1 (MQ=255)
cGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCAc < 2:3546273/93‑1 (MQ=255)
ggTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGGCGAAATCATCGTCGGGTTGCCGCTGAATATGGA‑CGGCAcc > 2:2158060/1‑93 (MQ=255)
gTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGGCGAAATCATCGTCGGTTTGCCGCTGGATATTGA‑CGGCAccc > 1:3192485/1‑92 (MQ=255)
aCGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAg < 2:1746308/93‑1 (MQ=255)
cGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGGCGAAATCATCGTCGGGTTGCCGCCGGATATGGA‑GCGCAcccggg > 1:3419827/1‑89 (MQ=255)
cGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGc < 2:2086567/93‑1 (MQ=255)
gCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGGCGAAAACATCGTCGGGTTGCCGCTGAATATGGG‑AGGGACCGAGCa > 2:403213/1‑93 (MQ=255)
ccGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCaa < 2:4359228/93‑1 (MQ=255)
ccGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCaa < 1:888963/93‑1 (MQ=255)
cGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAAc < 2:128127/93‑1 (MQ=255)
cGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAAc < 1:1163126/93‑1 (MQ=255)
ggACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGGCGAAATCATCGTCGGGTTGCCGCTGAATATGGA‑CGGGACCGAGCAAcc > 2:1234773/1‑93 (MQ=255)
gACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCa < 2:2292403/93‑1 (MQ=255)
aCTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCAt < 2:146859/93‑1 (MQ=255)
cTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCAtt < 2:1628238/93‑1 (MQ=255)
cTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCAtt < 2:1568803/93‑1 (MQ=255)
tagAACATTATCGAGCGTTTACTGAAAGAGTGGCGGG‑CCGGCCAAATCAACGTTGGCATGCCCCCGGAAATAGACCGGCACC‑ACCAACCAttt > 2:40116/3‑92 (MQ=255)
tGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCAttt > 1:3602631/1‑92 (MQ=255)
tGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCAtta > 1:1750729/1‑92 (MQ=255)
ggAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGa < 1:1647177/93‑1 (MQ=255)
gAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGAc < 2:1750092/93‑1 (MQ=255)
gAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGAc < 2:2241795/93‑1 (MQ=255)
gAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGAc < 1:4105137/93‑1 (MQ=255)
gAACATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGAc < 2:3115714/93‑1 (MQ=255)
aaCATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGGCGAAATCATCGTCGGGTTGCCGCTGAATATGGA‑CGGCACCGAGGAAACATTGACt > 2:1801285/1‑93 (MQ=255)
aaCATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACt < 1:2178856/93‑1 (MQ=255)
aaCATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAAACATCGTCGGGTTGGCGCTGAATATGGA‑CGGCACCGGGGAAACAtttaat > 1:429915/1‑89 (MQ=255)
cATTATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGA‑CGGCACCGAGGAACCATTTACTGc > 1:4041818/1‑93 (MQ=255)
ttATCGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAAACATCGTCGGTTTGCCGCTGGATATGGA‑CGGCACCCAGGAACCATTGACTTccc > 2:4150061/1‑92 (MQ=255)
aTCGAGCGTGTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCaga < 1:4245100/93‑1 (MQ=255)
cGAGCGTTTACTGAAAGAGTGGCGGC‑CGGGCGAAATCATCGTCGGGTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAgc > 2:4645185/1‑93 (MQ=255)
cGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAgc < 1:2820284/93‑1 (MQ=255)
cGAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAgc < 1:2567327/93‑1 (MQ=255)
gAGCGTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGA‑CGGCACCGAGCAAACATTTACTTCCAGGgcg > 2:3495619/1‑93 (MQ=255)
gTTTACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTa < 1:3432662/93‑1 (MQ=255)
ttACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTaaa < 2:1187170/93‑1 (MQ=255)
ttACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTaaa < 1:3808007/93‑1 (MQ=255)
ttACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTaaa < 2:1677257/93‑1 (MQ=255)
tACTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAAt < 1:2967854/93‑1 (MQ=255)
tACTGAAAGAGTGGCGGC‑CGGACGAAAAAATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTTCCAGAGCGCGTAAAt > 2:1021003/1‑93 (MQ=255)
aCTGAAAGAGTGGCGTT‑AGGACGAAATCATCGTGGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAAtt < 2:754603/93‑1 (MQ=255)
aCTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGGATATGGA‑CGGGACCGAGCAACCATTGACTGCCAGAGCGCGTAAAtt > 2:324118/1‑93 (MQ=255)
aCTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAAtt < 1:1468828/93‑1 (MQ=255)
cTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAAttt < 2:3775619/93‑1 (MQ=255)
cTGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAAttt > 1:1298571/1‑93 (MQ=255)
cTGAAAGAGTGGCGAC‑CGCACGAAATCATCGTCGGTTGGCCGCTGAATATGGA‑GGGCACCGAGCAACCATTGACTGGCAGAGCGCGTTAAtta < 2:1429537/93‑2 (MQ=255)
tGAAAGAGTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAAACATTTACTTCCAGAGCGCGGAAAtttt > 1:3754671/1‑92 (MQ=255)
aaGAGGGGCGGC‑GGGACGAAATCATCGTCGTTTTGCCGCTGAATAGGGA‑GGGCCCCGAGCAACCATTGACTGCAAGAGCGGGTAAATTTGCCa < 2:3282786/93‑1 (MQ=255)
gagTGGCGGC‑CGGGCGAAATCATCGTCGGGTTGCCGCCCAAAATGGA‑AGGCACCCCGGAACCATTGACTGGCAGAGCGCGTAAATTTGGCAAc > 2:4188625/1‑93 (MQ=255)
gagTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAAc < 1:3914694/93‑1 (MQ=255)
gagTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAAc < 1:3936940/93‑1 (MQ=255)
gagTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAAc < 2:764775/93‑1 (MQ=255)
gTGGCGGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCg < 2:551530/93‑1 (MQ=255)
ggcggc‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTa < 1:1042451/93‑1 (MQ=255)
ggcggc‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTa < 2:1934817/93‑1 (MQ=255)
|
CCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCAGC‑CGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA‑CGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTA > NC_000913/3091589‑3091765
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCAGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA > NC_000913/3091583‑3091769
|
GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCG > SRR4302535.428558/1‑94 (MQ=60)
GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCG < SRR4302535.2861591/94‑1 (MQ=60)
CGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGAC < SRR4302535.2751954/94‑1 (MQ=60)
CGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGAC < SRR4302535.2229066/94‑1 (MQ=60)
ACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAA > SRR4302535.625369/1‑94 (MQ=60)
CGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACGAAATC > SRR4302535.2081302/1‑94 (MQ=60)
CGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATC < SRR4302535.3025774/94‑1 (MQ=60)
CCCTCCCCCTTTGCCTGCAATTAAAGCACAGGTCGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATC < SRR4302535.924777/94‑1 (MQ=60)
GCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGACGAAATAA > SRR4302535.2649007/1‑94 (MQ=60)
CTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGgcgcaaacaa > SRR4302535.690387/1‑84 (MQ=60)
CTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCAT < SRR4302535.4392896/94‑1 (MQ=60)
CGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGACATCATCG < SRR4302535.1290434/94‑1 (MQ=60)
CGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCG < SRR4302535.1673230/94‑1 (MQ=60)
CGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCG < SRR4302535.149339/94‑1 (MQ=60)
GCTCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGT < SRR4302535.3043163/94‑1 (MQ=60)
GCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGgcggaagattcct > SRR4302535.3897998/1‑81 (MQ=60)
GCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATacatcc > SRR4302535.3557380/1‑88 (MQ=60)
CCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTC < SRR4302535.155507/94‑1 (MQ=60)
CCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCG > SRR4302535.480890/1‑94 (MQ=60)
TTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGT > SRR4302535.4397285/1‑94 (MQ=60)
TTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCTGACGAAcacatcatccggt > SRR4302535.2528686/1‑81 (MQ=60)
CCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGGTTGC > SRR4302535.1951318/1‑94 (MQ=60)
CCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGGCGAAATCATCGTCGGGTTGC > SRR4302535.1054230/1‑94 (MQ=60)
CTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGGTTGGC > SRR4302535.870194/1‑94 (MQ=60)
CTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACATCGTCGGGTTGCC > SRR4302535.922573/1‑94 (MQ=60)
CTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCC < SRR4302535.3840530/94‑1 (MQ=60)
TGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGGCGAAATCATCGTCGGGTTGCCG > SRR4302535.685475/1‑94 (MQ=60)
CAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCT < SRR4302535.1815503/94‑1 (MQ=60)
CAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCT < SRR4302535.3530587/94‑1 (MQ=60)
AATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTG < SRR4302535.4201079/94‑1 (MQ=60)
AATTAAAGCACAGGACGGCACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGgcggcattattgtcggtttggcgccg > SRR4302535.743338/1‑68 (MQ=60)
ATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGgcggaaagatccgggggttgccgcgta > SRR4302535.1766937/1‑67 (MQ=60)
TAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAAT < SRR4302535.127033/94‑1 (MQ=60)
AAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATAT < SRR4302535.2718358/94‑1 (MQ=60)
AAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATAT < SRR4302535.1126169/94‑1 (MQ=60)
AGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGGAATAATCGTCGGTGTGGCGCTGAATATG > SRR4302535.1915896/1‑94 (MQ=60)
AGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGGCGCCGGATATG > SRR4302535.1809091/1‑94 (MQ=60)
GCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGG < SRR4302535.1585603/94‑1 (MQ=60)
CACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGgcgacagaatcgtcgggttggcggtgaatattgg > SRR4302535.2776878/1‑60 (MQ=60)
CACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGA < SRR4302535.3810273/94‑1 (MQ=60)
caAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGAC < SRR4302535.3943031/92‑1 (MQ=60)
ACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGAC < SRR4302535.1468578/94‑1 (MQ=60)
CAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACG < SRR4302535.4626930/94‑1 (MQ=60)
AGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGAAGAAATCATCGTCGGGTTGGCGCTGGATATGGgggg > SRR4302535.4319118/1‑90 (MQ=60)
AGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGTCGCTGAATATGGACCG > SRR4302535.4707411/1‑94 (MQ=60)
AGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGACGAAATCATAGTCCGTTTGCCGCgcaatatgggcag > SRR4302535.2006164/1‑81 (MQ=60)
GACGGTACGCAGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCA < SRR4302535.4269306/94‑1 (MQ=60)
ACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCAC < SRR4302535.508695/94‑1 (MQ=60)
ACGGTACGCCGGACTGGAACATTATAGAGCGTTTACTGAAAGAGAGGCGGCCGGGCGAAATaaacgcaggttttgcgctgtataaagccagcac > SRR4302535.434044/1‑61 (MQ=54)
CGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGACGAAATCATCGTCGGGTTGCCGCCGGATATGGACGGgaac > SRR4302535.4124270/1‑90 (MQ=60)
GGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGTTTGCCGCTGGATATTGACGGCACCC > SRR4302535.3214569/1‑94 (MQ=60)
GTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGA < SRR4302535.1694709/94‑1 (MQ=60)
ACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGGTTGCCGCcggatatggagcgcacccggg > SRR4302535.3443615/1‑73 (MQ=60)
CGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCA < SRR4302535.1402436/94‑1 (MQ=60)
CCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAAC < SRR4302535.895262/94‑1 (MQ=60)
CGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACC < SRR4302535.1171436/94‑1 (MQ=60)
CGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACC < SRR4302535.3705941/94‑1 (MQ=60)
ACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATT < SRR4302535.4344408/94‑1 (MQ=60)
CTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGCAACCATTT > SRR4302535.3627629/1‑94 (MQ=60)
CTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGCAACCATTA > SRR4302535.1763389/1‑94 (MQ=60)
GGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACGAAAACATTGTCGGGTTGCCGCGGAATATGGgcgggacccggccaccaattac > SRR4302535.1334133/1‑72 (MQ=48)
GGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATAGTCGGTTTTCCGCTGGATATGGACGGCACCGAGCAACCActcac > SRR4302535.4242983/1‑89 (MQ=60)
GGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGAC < SRR4302535.1659084/94‑1 (MQ=60)
GAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACT < SRR4302535.4133242/94‑1 (MQ=60)
GAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGGTTGGCGCTGAATATGGACGGCACCGgggaaacatttaat > SRR4302535.432906/1‑80 (MQ=60)
AACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTG < SRR4302535.2194414/94‑1 (MQ=60)
ACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGGAACCATTTACTGC > SRR4302535.4069488/1‑94 (MQ=60)
ATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGACGGGTTGCCCCTGGATATGGGAGGCACCGAGCAACCCATTACTGCCA > SRR4302535.87640/1‑94 (MQ=50)
TTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAG < SRR4302535.1072111/94‑1 (MQ=60)
TATCGAGCGTTTACTGAAAGAGTGGCGGCCGGAGGAAATAATAGTCGGTTTGCCGCTGAATATTGGAGGCACCGAGCAACCATTGACTCCCCGA > SRR4302535.3849853/1‑94 (MQ=60)
ATCGAGCGTGTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAG < SRR4302535.4274161/94‑1 (MQ=60)
CGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCG < SRR4302535.2840315/94‑1 (MQ=60)
CGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCG < SRR4302535.2953755/94‑1 (MQ=60)
CGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCG < SRR4302535.2585796/94‑1 (MQ=60)
GAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGGCGGGTTGCCGCTGTATATGGGCGGGACCGAGCAACCATTGACCGCCCGAGAGC > SRR4302535.165772/1‑94 (MQ=50)
GAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATTATTGCCGGTTTGCCGCCGGATATGGGGGGGACCGAGCAGCCAGTCGCTGCCAGAGCGC > SRR4302535.1935674/1‑94 (MQ=19)
CGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGGACCCAGCAAACAATGACTGCCAGAGAGCGGA > SRR4302535.3965401/1‑94 (MQ=60)
CGTTTACTGAAAGAGTGGCGGCCCGGCGAAATCATCGTCGGTTTGCCGCCGTATATAGACGGGGCCGCGCAACCATTTACTGCCCGAGGGCGTA > SRR4302535.1633972/1‑94 (MQ=23)
GTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAA < SRR4302535.3456516/94‑1 (MQ=60)
TTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAAT < SRR4302535.3834274/94‑1 (MQ=60)
TACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATT < SRR4302535.1168984/94‑1 (MQ=60)
TACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATT < SRR4302535.4599585/94‑1 (MQ=60)
TACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATT < SRR4302535.2988682/94‑1 (MQ=60)
ACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTT < SRR4302535.328780/94‑1 (MQ=60)
ACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTT < SRR4302535.1479352/94‑1 (MQ=60)
ACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTT > SRR4302535.1307831/1‑94 (MQ=60)
CTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAAACATTTACTTCCAGAGCGCGGAAATTTT > SRR4302535.3780645/1‑94 (MQ=60)
TGAAAGAGTGGCGGCCGGACGAAATAATCGTCGGGTTGCCGCTGAATATGGACGGGACCGAGCAACCATTGACTGCCAGAGGGCGTAAATTTGC > SRR4302535.1351272/1‑94 (MQ=60)
GAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCCGAGCGCGTAAATTTTCC > SRR4302535.3531701/1‑94 (MQ=60)
AAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTTCCA > SRR4302535.2162550/1‑94 (MQ=60)
GAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACC < SRR4302535.3941483/94‑1 (MQ=60)
GAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACC < SRR4302535.3963794/94‑1 (MQ=60)
AGTGGCGGCCGGACGAAATCATCGTCGGGTTGGCGCTGGATATAGGCCGCGCCGAGCAACCATTGACTGCCAGAGCGCcgaaattttcccaccc > SRR4302535.2473068/1‑78 (MQ=35)
GGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTAT < SRR4302535.1049840/94‑1 (MQ=60)
GCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATT > SRR4302535.2509655/1‑94 (MQ=60)
GCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATT < SRR4302535.3731385/94‑1 (MQ=60)
GGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCT > SRR4302535.292912/1‑94 (MQ=60)
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GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCAGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA > NC_000913/3091583‑3091769
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
