Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,091,676 |
A→G |
Q53R (CAG→CGG) |
yqgF → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,091,676 | 0 | A | G | 100.0%
| 685.8
/ NA
| 218 | Q53R (CAG→CGG) | yqgF | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (106/112); total (106/112) |
Only 100 of 233 total aligned reads displayed.
TTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCAGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTA > NC_000913/3091586‑3091765
|
ttACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTggcggc > 2:6502002/1‑93 (MQ=255)
aCCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCg > 1:5765354/1‑93 (MQ=255)
cGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGa < 1:6204494/93‑1 (MQ=255)
gCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCGGGGCg > 2:6175809/1‑93 (MQ=255)
gCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCGGGACg > 1:767001/1‑93 (MQ=255)
aCCGCTCGCCCTTTGCCTGCAAGTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGaa < 1:331785/93‑1 (MQ=255)
ccGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGaaa > 1:3640087/1‑93 (MQ=255)
gCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGGCGAAata > 2:4055623/1‑92 (MQ=255)
gCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAatc < 1:244780/93‑1 (MQ=255)
ccTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAatc < 2:7310142/92‑1 (MQ=255)
cTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGGCGGACTGGAACATTAGCGGGCGTGTACTGAAAGAGTGGCGGCCGGACGAAatca < 2:2687374/93‑1 (MQ=255)
cTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGaaaaaa > 2:5731006/1‑90 (MQ=255)
cTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGACGAAataa > 2:4162863/1‑91 (MQ=255)
tCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGAGGACatcct > 1:881471/1‑91 (MQ=255)
cGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAaacatc > 1:1936240/1‑93 (MQ=255)
cGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGGAaacatc > 1:1027504/1‑93 (MQ=255)
cGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGACGAAaacaac > 2:5607699/1‑91 (MQ=255)
gCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACAtcg > 2:6327518/1‑93 (MQ=255)
cccTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCGCGACGACAAAAtcgt > 1:3841824/1‑93 (MQ=255)
cccTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCAtcgt < 1:3567344/93‑1 (MQ=255)
ccTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGGCGGAAACAtcgtc > 1:2971668/1‑93 (MQ=255)
ccTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCAtcgtc < 1:6271724/93‑1 (MQ=255)
cTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGGCGGAAACAtagtcg > 2:3011780/1‑93 (MQ=255)
cTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATAAtcgtcg > 1:2667015/1‑93 (MQ=255)
cTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAAAAtcgtcg > 2:1548297/1‑93 (MQ=255)
cTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAAAAtcctcg > 1:4517632/1‑93 (MQ=255)
cTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCAtcgtcg < 1:4854202/93‑1 (MQ=255)
tttGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCgg > 2:2554935/1‑93 (MQ=255)
ttGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGt < 2:4566896/93‑1 (MQ=255)
cTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCCGACGAAAGCTTAGTCGGattcc > 2:6605814/1‑91 (MQ=255)
tGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACATCGTCCGTTTTcc > 2:4308557/1‑93 (MQ=255)
tGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGcc > 1:7302705/1‑93 (MQ=255)
cAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGc < 2:4863109/93‑1 (MQ=255)
cAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGc < 2:2623942/93‑1 (MQ=255)
ttAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACGAAATCATCGTCGGTGTGCGGCTgg > 1:7775710/1‑92 (MQ=255)
aaaGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAat < 2:3361/93‑1 (MQ=255)
aaGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAata < 1:7155646/93‑1 (MQ=255)
aGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAatat < 1:7568930/93‑1 (MQ=255)
acacaGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATg < 1:3790648/92‑1 (MQ=255)
aacaGGACGGTACGCCGGACTGGAACATTAGCGAGCGTGTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATgg < 2:4437514/92‑1 (MQ=255)
acaGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGa < 1:822289/93‑1 (MQ=255)
caGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCGCCTGAATATAGag > 1:1131923/1‑92 (MQ=255)
aGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATTGACg > 1:4755531/1‑93 (MQ=255)
ggACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGGTTGGCGCTGAATATGGACgg > 2:3625663/1‑93 (MQ=255)
ggACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGCCGGGTTGGCGCTGTATATAGAggg > 1:6943587/1‑93 (MQ=255)
gACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGc < 1:5103346/93‑1 (MQ=255)
gTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGTTTGCCGCTGGATATTGACGGGACCg > 2:2850042/1‑93 (MQ=255)
tACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCCGAATATTGGCGGCAcccg > 1:5175098/1‑91 (MQ=255)
aCGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAg < 2:6778453/93‑1 (MQ=255)
aCGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAg < 1:4384192/93‑1 (MQ=255)
gCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGGATATGGGCGGCACCCAGCa > 2:2406377/1‑93 (MQ=255)
gCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCa < 1:1876117/93‑1 (MQ=255)
ccGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACATCGTCGGGTTGCCGCTGAATATGGAAGGCACCGAGCaa > 2:157780/1‑93 (MQ=255)
cGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGGTTGCCGCTGGATATGGACGGCACCGAGCCAc > 1:7193087/1‑93 (MQ=255)
ggACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAAcc < 1:830084/93‑1 (MQ=255)
ggACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGGCGGCACCGCGCAAcc > 1:3257868/1‑93 (MQ=255)
ggACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGGCGAAAACATCGTCCGGTTGCCCCTGAATATGGACAGCACCCAGCAAcc > 1:4717492/1‑93 (MQ=255)
aCTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCAt < 1:5263979/93‑1 (MQ=255)
ggAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGCGCCACCATTGa > 1:4057293/1‑93 (MQ=255)
ggAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGa < 1:3921280/93‑1 (MQ=255)
ggAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGGGGAAATCAACGTCGGGTTGCCGCTGAATATGGACGGCCCCCAGCAACCCTTGa > 2:347461/1‑93 (MQ=255)
ggAACATTATCGAGCGTTTACTGAAAGAGTCGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGa < 1:7461374/93‑1 (MQ=255)
ggAACAGTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGa < 1:2720441/93‑1 (MQ=255)
gAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACGGAAACATCGTCTGGTTGCCGCTGGATATGGACCGGACCCAGCCACCATTGAc > 2:1218933/1‑93 (MQ=255)
gAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATTTGGACGGCACCGAGCAACCATTGAc < 2:7623437/93‑1 (MQ=255)
gAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGAc < 2:7398692/93‑1 (MQ=255)
aaCATTATCGAGCGTGTACGGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACt < 2:1772780/93‑1 (MQ=255)
ttATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGTTTTCCGCTGAAGAATGACCGCACCGCGGAACCATTGACtcgca > 2:2515505/1‑89 (MQ=255)
ttATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCa < 2:6888658/93‑1 (MQ=255)
tATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCag < 2:2672646/93‑1 (MQ=255)
aTCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCaga < 2:6552111/93‑1 (MQ=255)
tCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGTTTGCCGCTGAATATTTACGGCACCGCGCAACCCTTGACTGGCcgag > 2:4123960/1‑93 (MQ=255)
tCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCagag < 1:6098484/93‑1 (MQ=255)
cGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAgc < 2:1046721/93‑1 (MQ=255)
aGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAgcgc < 2:2874671/93‑1 (MQ=255)
aGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCCAGCAACCCTTGACTGCCCGAgcgc > 2:2156595/1‑93 (MQ=255)
aGCGTTTACTGAAAGAGTGGCGGCCCGACGAAATCATCGTCGGCTTGCCCCTGAAAATGGACGGGACCGAGCAACCCTTGACTGCCAGAgccc > 2:7548125/1‑91 (MQ=255)
gCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGcgcg < 1:6708648/93‑1 (MQ=255)
cGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGt < 2:4896982/93‑1 (MQ=255)
cGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGt > 2:2069417/1‑93 (MQ=255)
gTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTa > 1:5860133/1‑93 (MQ=255)
tttACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGTTTGCCGCTGGATATGGACGGGACCGCGGAACCATTGACTGGCAGAGCGCGGaa > 2:1272370/1‑93 (MQ=255)
tttACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGGACCGAGCAACCATTGACTGCCAGAGcgcggga > 1:7350550/1‑90 (MQ=255)
ttACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTaaa < 2:586754/93‑1 (MQ=255)
tACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAAt < 2:5124774/93‑1 (MQ=255)
aCTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAAtt < 1:2113590/93‑1 (MQ=255)
cTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAAttt < 2:3658980/93‑1 (MQ=255)
cTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCACGTAAAttt < 2:125750/93‑1 (MQ=255)
tGAAAGAGTGGCGGCCGGGCGAAAACATCGTCGGGTTGCCGCTGGATTTGGGCGGGACCGAGCAACCATTGACTTCCCAAGCGCGTAAAtttt > 2:6070899/1‑92 (MQ=255)
tGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGGCAAtttt > 1:3815231/1‑92 (MQ=255)
gAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGc < 1:6333906/93‑1 (MQ=255)
gAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGc < 1:6389892/93‑1 (MQ=255)
aaGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATTGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTTCCa > 2:7267316/1‑93 (MQ=255)
aaGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAGTTTGCCa < 1:1174297/93‑1 (MQ=255)
aaGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCa < 2:775904/93‑1 (MQ=255)
gagTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGCGCAACCATTGACTGCCAGAGCGCGTAAAATTTCCCAc > 2:3226040/1‑93 (MQ=255)
tGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGt < 2:68915/93‑1 (MQ=255)
ggcggcCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTa < 1:1255154/93‑1 (MQ=255)
ggcggcCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTa < 1:4218205/93‑1 (MQ=255)
ggcggcCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTa > 2:4529425/1‑93 (MQ=255)
|
TTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCAGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTA > NC_000913/3091586‑3091765
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCAGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA > NC_000913/3091583‑3091769
|
GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCG < SRR4302543.2000836/94‑1 (MQ=60)
GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCG > SRR4302543.6914294/1‑94 (MQ=60)
GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCG > SRR4302543.6914297/1‑94 (MQ=60)
CATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGG < SRR4302543.4878983/94‑1 (MQ=60)
CATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGG > SRR4302543.6451605/1‑94 (MQ=60)
TACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCG > SRR4302543.5817866/1‑94 (MQ=60)
CCCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGG < SRR4302543.7220685/94‑1 (MQ=60)
ACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGG < SRR4302543.5231015/94‑1 (MQ=60)
CGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGAC < SRR4302543.6263082/94‑1 (MQ=60)
CGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGAC < SRR4302543.5849063/94‑1 (MQ=60)
CGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGAC < SRR4302543.3313826/94‑1 (MQ=60)
GGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCGGGACG > SRR4302543.773744/1‑94 (MQ=60)
GGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGACG > SRR4302543.1419542/1‑94 (MQ=60)
ACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAA > SRR4302543.3672117/1‑94 (MQ=60)
ACCGCTCGCCCTTTGCCTGCAAGTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAA < SRR4302543.334829/94‑1 (MQ=60)
CCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGggcaaaa > SRR4302543.5586841/1‑87 (MQ=60)
CGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGCCGAAATC > SRR4302543.732395/1‑94 (MQ=60)
GCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGCCCAAATCA > SRR4302543.1185531/1‑94 (MQ=60)
GCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCA < SRR4302543.246905/94‑1 (MQ=60)
CTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGgcgcaataat > SRR4302543.4364432/1‑84 (MQ=60)
CTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCAT > SRR4302543.5707349/1‑94 (MQ=60)
CTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACAT > SRR4302543.3739286/1‑94 (MQ=60)
TCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACATC > SRR4302543.1953646/1‑94 (MQ=60)
TCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGCAGAAATAATC > SRR4302543.1073020/1‑94 (MQ=60)
TCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGGAAACATC > SRR4302543.1036608/1‑94 (MQ=60)
TCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATC < SRR4302543.4431079/94‑1 (MQ=60)
CGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACATCG > SRR4302543.1159217/1‑94 (MQ=60)
CGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCG < SRR4302543.2403457/94‑1 (MQ=60)
CCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTC < SRR4302543.4071768/94‑1 (MQ=60)
CCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTC < SRR4302543.3598895/94‑1 (MQ=60)
CCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAaaatcctcg > SRR4302543.4558719/1‑85 (MQ=60)
CCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATAATCGTCG > SRR4302543.2691197/1‑94 (MQ=60)
CCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCG < SRR4302543.6330857/94‑1 (MQ=60)
CCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCAGGCGAAATAATCGTCG > SRR4302543.5265980/1‑94 (MQ=60)
CTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGG < SRR4302543.4898466/94‑1 (MQ=60)
CTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGG < SRR4302543.786015/94‑1 (MQ=60)
TTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTGTCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTT < SRR4302543.2030082/94‑1 (MQ=60)
TTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGT > SRR4302543.4881231/1‑94 (MQ=60)
CCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGgcggcacaccccacggtttcc > SRR4302543.5979186/1‑73 (MQ=60)
CTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCC > SRR4302543.7373139/1‑94 (MQ=60)
TGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGGTTGGCG > SRR4302543.6190145/1‑94 (MQ=60)
CAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAaacacggcgggtttgctcc > SRR4302543.6136532/1‑75 (MQ=60)
AATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACGAAATCATtcgccgctttacgccg > SRR4302543.6200915/1‑78 (MQ=60)
ATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGACGAAATCATCGTCGGTgtgcggctgg > SRR4302543.7849043/1‑84 (MQ=60)
TAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAAT < SRR4302543.2736544/94‑1 (MQ=60)
AAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATA > SRR4302543.6328606/1‑94 (MQ=60)
AAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATAT < SRR4302543.7225193/94‑1 (MQ=60)
AAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATAT < SRR4302543.7580982/94‑1 (MQ=60)
AAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATAT < SRR4302543.4661587/94‑1 (MQ=60)
AAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATAT < SRR4302543.3826814/94‑1 (MQ=60)
AGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATG < SRR4302543.6535459/94‑1 (MQ=60)
AGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATG < SRR4302543.7640942/94‑1 (MQ=60)
GCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGG < SRR4302543.3189258/94‑1 (MQ=60)
ACACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGG < SRR4302543.3824044/94‑1 (MQ=60)
CCAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGAC < SRR4302543.829784/94‑1 (MQ=60)
ACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGCCGAAATCATCCTCGGTgtgtcgctgtattgggca > SRR4302543.1142203/1‑76 (MQ=60)
ACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGgttgcgcctgaatatagag > SRR4302543.1142202/1‑75 (MQ=60)
ACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGAC < SRR4302543.3852456/94‑1 (MQ=60)
ACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGAC < SRR4302543.829533/94‑1 (MQ=60)
CAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAAACATCGTCGGTTTGGCGCTTGATATTGACG > SRR4302543.7790746/1‑94 (MQ=60)
CAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATTGACG > SRR4302543.4798989/1‑94 (MQ=60)
AGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGGCGGGCGGAATCATCGTCGGgttgtcgccgtaattatgggg > SRR4302543.6200008/1‑73 (MQ=60)
AGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGccgggttggcgctgtatatagaggg > SRR4302543.7008916/1‑69 (MQ=60)
GGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGC < SRR4302543.7925290/94‑1 (MQ=60)
GACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCA < SRR4302543.5149539/94‑1 (MQ=60)
CGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGGTTGCCGCTGAATATGGGCGGGACC > SRR4302543.4539742/1‑94 (MQ=60)
CGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGGAATCATCGTCGGCGTGCCGCTGAATtacaggggcaca > SRR4302543.1743481/1‑82 (MQ=60)
CGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACC < SRR4302543.6114034/94‑1 (MQ=60)
GGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGgcccg > SRR4302543.2640921/1‑89 (MQ=60)
GTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGA < SRR4302543.872646/94‑1 (MQ=60)
GTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCCGAATATtggcggcacccg > SRR4302543.5221824/1‑82 (MQ=60)
ACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGC < SRR4302543.4423938/94‑1 (MQ=60)
CGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCcgcggcgggttgacgctgaatatggtggggccccagga > SRR4302543.6542035/1‑56 (MQ=60)
GCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAA < SRR4302543.1892974/94‑1 (MQ=60)
GCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGGCGCTGAATATGGGCGGCACCGCGCAA > SRR4302543.6104635/1‑94 (MQ=60)
CCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCCCCGAGCAAC < SRR4302543.1926202/94‑1 (MQ=60)
CCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAAC < SRR4302543.6442497/94‑1 (MQ=60)
CCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAAC < SRR4302543.905210/94‑1 (MQ=60)
CCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGGTTGCCGCTGGATATGGACGGCACCGAGCCAC > SRR4302543.7262845/1‑94 (MQ=60)
CGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGGACCGAGCCACC > SRR4302543.7409269/1‑94 (MQ=60)
CGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGGCGGCACCGCGCAACC > SRR4302543.3287316/1‑94 (MQ=60)
CGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGTTTGCCGCTGAATATGGACGGGACCGAGAAACC > SRR4302543.4760599/1‑94 (MQ=60)
CGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGGCGAAAACATCGTCCGGTTGCCCCTGAATATGGACAGCACCCAGCAACC > SRR4302543.4760598/1‑94 (MQ=53)
GGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCA < SRR4302543.7241028/94‑1 (MQ=60)
GGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCA < SRR4302543.837400/94‑1 (MQ=60)
ACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATT < SRR4302543.3633849/94‑1 (MQ=60)
ACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATT < SRR4302543.5311471/94‑1 (MQ=60)
TGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATAATCATCGGTTTGCCGCTGCATATGGACGGCACCGgggcaccacttc > SRR4302543.502918/1‑82 (MQ=60)
TGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGCGCCACCATTGA > SRR4302543.4093618/1‑94 (MQ=60)
TGGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGGATATGGGCGGCACCGAGCCACCATTTA > SRR4302543.4826336/1‑94 (MQ=60)
GGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGAC < SRR4302543.3955886/94‑1 (MQ=60)
GGAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGAC < SRR4302543.7532846/94‑1 (MQ=60)
GGAACATTATCGAGCGTTTACTGAAAGAGTCGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGAC < SRR4302543.7532845/94‑1 (MQ=60)
GGAACAGTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGAC < SRR4302543.2745178/94‑1 (MQ=60)
GAACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGCTTGCCGCTGAATATGGACGGCACCGAGCAACCATTTACT > SRR4302543.4122440/1‑94 (MQ=60)
AACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGGACCGAGGCACCATTTACTG > SRR4302543.6796074/1‑94 (MQ=60)
AACATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTG < SRR4302543.6352560/94‑1 (MQ=60)
CATTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGGATATGGACGGCACCGAGCAACCATTGACTGCC > SRR4302543.3975306/1‑94 (MQ=60)
ATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGGCGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGGAACCATTGACTGCCA > SRR4302543.2090850/1‑94 (MQ=60)
ATTATCGAGCGTTTACTGAAAGAGTGGCGGCCCGACGAAATCATCGTCGGTTTGGCGCTGAATATGGGCGGCACCGAGCAACCATTGACTGCCA > SRR4302543.2542082/1‑94 (MQ=60)
TTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAG < SRR4302543.2751511/94‑1 (MQ=60)
TTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAG < SRR4302543.3840653/94‑1 (MQ=60)
TTATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACAAAATCAaagtcggcttgtccctgtgtatgggcggacccgggcaccccttgattgccaa > SRR4302543.3602701/1‑42 (MQ=60)
TATCGAGCGTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGGAACCATTGACTGCCAGA > SRR4302543.2061618/1‑94 (MQ=60)
ATCGAGCGTTTACTGAAAGAGTGGCGGGCGGGCGAAATCATCGTCGGGTTGCCGCTGGAAATGGACGGCACCGggccaacattgacttccccag > SRR4302543.2459586/1‑73 (MQ=50)
ATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAG < SRR4302543.3353478/94‑1 (MQ=60)
ATCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTTCCAGAG > SRR4302543.318453/1‑94 (MQ=60)
TCGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGC < SRR4302543.6156265/94‑1 (MQ=60)
CGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGGATATGGgggggaccgggcaacccttagctgcacaggcc > SRR4302543.2354592/1‑62 (MQ=60)
CGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGGATATGGACGGCACCGAGCAACCATTGACTGCCCGAGCG > SRR4302543.5224790/1‑94 (MQ=60)
CGAGCGTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGTTTGCCGCCGGATATGGGCGGCACCGAGCAACCATTGACTGGCAGAGCG > SRR4302543.5616819/1‑94 (MQ=60)
CGAGCGTTTACTGAAAGAGTGGCGGCCGGACCAAATCATCGACGGGTTGCCGCTGAATAAGGACGGCACCGCGCAACCcattactcccacaacg > SRR4302543.6474071/1‑78 (MQ=60)
CGAGCGTTTACTGAAAGAGAGGCGGCCGGACGAAATCATCGTCGGTTTGGCGCTGgaaactcacggcaccctgccaacagttaccgtcaccatc > SRR4302543.5586098/1‑55 (MQ=57)
GAGTGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGGACCCAGCCACCATTGACTGCCAGAGCGC > SRR4302543.1689265/1‑94 (MQ=60)
AGCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCCTTTACTTCCAGAGCGCG > SRR4302543.2918703/1‑94 (MQ=60)
GCGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGT < SRR4302543.6771996/94‑1 (MQ=60)
GCGTTGGCTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGT < SRR4302543.1709574/94‑1 (MQ=60)
CGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTA < SRR4302543.2994606/94‑1 (MQ=60)
CGTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTA > SRR4302543.5913468/1‑94 (MQ=60)
GTTTACTGAAAGAGTGGCGGCCGGGCGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCCTTGACTGCCAGAGCGgggaa > SRR4302543.840887/1‑89 (MQ=60)
GTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAA < SRR4302543.2320082/94‑1 (MQ=60)
GTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAAACATTGACTGCCAGAGCGCGTAA > SRR4302543.5192974/1‑94 (MQ=60)
GTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGGACCGAGCAACCATTGACTGCCAGAGCGCGgga > SRR4302543.7421255/1‑91 (MQ=60)
GTTTACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGGGCGTAA > SRR4302543.6934118/1‑94 (MQ=60)
GTTTACTGAAAGAGTGGCGGCCGGACGAAAACATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGACCGCGTAA > SRR4302543.6881710/1‑94 (MQ=60)
ACTGAAAGAGTGGCGGCCGGGCGAAAACATCGTCGGGTTGCCGCTGAATATGGACGGCACCGAGCCACCATTTACCGCCAGAGCGCGGAAATTT > SRR4302543.6248044/1‑94 (MQ=60)
ACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTT > SRR4302543.2276036/1‑94 (MQ=60)
ACTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTT < SRR4302543.2132509/94‑1 (MQ=60)
ACTGAAAGAGTGGCGGCCGGACGAAATAATCGTCGGGTTGCCGCTGAATATGGACGGGACCGAGCAACCATTGACTGCCAGCGCGCGTACATTT > SRR4302543.6248045/1‑94 (MQ=60)
CTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGgcaatttt > SRR4302543.3848864/1‑86 (MQ=60)
CTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTG < SRR4302543.768111/94‑1 (MQ=60)
CTGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTG < SRR4302543.7478528/94‑1 (MQ=60)
TGAAAGAGTGGCGGCCGGACGGAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGCGCAACCATTGACTGCCAGAGCGCGGAAATTTGC > SRR4302543.7696090/1‑94 (MQ=60)
TGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGGACCGAGCAACCATTGACTGCCAGAGCGCGgaaaatttc > SRR4302543.7352166/1‑85 (MQ=60)
TGAAAGAGTGGCGGCCGGACGAAATCATCGTCGGGTTGCCGCTGGATATGGGCGGCACCGCGCAAACATTGACTGCCAGAGCGCGTAAATTTGC > SRR4302543.451365/1‑94 (MQ=60)
GAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCC < SRR4302543.6450041/94‑1 (MQ=60)
GAAAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCC < SRR4302543.6393476/94‑1 (MQ=60)
AAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAGTTTGCCAA < SRR4302543.1184937/94‑1 (MQ=60)
AAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAA < SRR4302543.3414641/94‑1 (MQ=60)
AAGAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAA < SRR4302543.2622568/94‑1 (MQ=60)
GAGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACC > SRR4302543.6338023/1‑94 (MQ=60)
AGTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCG > SRR4302543.940915/1‑94 (MQ=60)
GTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGT > SRR4302543.7351370/1‑94 (MQ=60)
GTGGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGT < SRR4302543.5119060/94‑1 (MQ=60)
GGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTAT < SRR4302543.1266403/94‑1 (MQ=60)
GGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTAT < SRR4302543.4256446/94‑1 (MQ=60)
GGCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTAT > SRR4302543.6378145/1‑94 (MQ=60)
GCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATT < SRR4302543.6688617/94‑1 (MQ=60)
GCGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATT < SRR4302543.2087912/94‑1 (MQ=60)
CGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTC < SRR4302543.1402251/94‑1 (MQ=60)
CGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTC < SRR4302543.4440341/94‑1 (MQ=60)
CGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTC < SRR4302543.2338277/94‑1 (MQ=60)
CGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTC < SRR4302543.3692529/94‑1 (MQ=60)
CGGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTC > SRR4302543.914190/1‑94 (MQ=60)
GGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA < SRR4302543.1861890/94‑1 (MQ=60)
GGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA < SRR4302543.4855395/94‑1 (MQ=60)
GGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA > SRR4302543.3669447/1‑94 (MQ=60)
GGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA < SRR4302543.7492587/94‑1 (MQ=60)
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GCATTACCGGCACCGCTCGCCCTTTGCCTGCAATTAAAGCACAGGACGGTACGCCGGACTGGAACATTATCGAGCGTTTACTGAAAGAGTGGCAGCCGGACGAAATCATCGTCGGTTTGCCGCTGAATATGGACGGCACCGAGCAACCATTGACTGCCAGAGCGCGTAAATTTGCCAACCGTATTCA > NC_000913/3091583‑3091769
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
