Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,145,571 |
A→G |
intergenic (‑819/‑341) |
b2998 ← / → b3001 |
hypothetical protein/putative reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,145,571 | 0 | A | G | 99.4%
| 560.6
/ NA
| 175 | intergenic (‑819/‑341) | b2998/b3001 | hypothetical protein/putative reductase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (98/76); minor base T (0/1); total (98/77) |
| Fisher's exact test for biased strand distribution p-value = 4.40e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 180 total aligned reads displayed.
TTGCGGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAACTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGCAAGG > NC_000913/3145481‑3145660
|
ttGCGGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGct < 1:1895760/93‑1 (MQ=255)
cGGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTa > 1:4523865/1‑93 (MQ=255)
cGGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTa < 2:2027116/93‑1 (MQ=255)
gggCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTAc < 1:2177823/93‑1 (MQ=255)
gggCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTAc < 2:2986743/93‑1 (MQ=255)
cggCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTAc < 1:1343646/92‑1 (MQ=255)
ggCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTAcc < 1:1287306/93‑1 (MQ=255)
ggCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTAcc < 2:4093163/93‑1 (MQ=255)
cTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTg < 2:3403376/93‑1 (MQ=255)
ttCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGa > 2:558367/1‑93 (MQ=255)
aCCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTc > 2:2191250/1‑93 (MQ=255)
aGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGcc < 1:3397051/93‑1 (MQ=255)
gATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCa > 1:526053/1‑93 (MQ=255)
gATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCa > 2:2323898/1‑93 (MQ=255)
aCCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAgcgc > 1:1875817/1‑93 (MQ=255)
aCCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAgcgc > 2:4135893/1‑93 (MQ=255)
cGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATaa < 2:1135474/93‑1 (MQ=255)
gCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAAt > 2:1052959/1‑93 (MQ=255)
ccTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTg < 1:4043157/93‑1 (MQ=255)
ccTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTg > 2:778156/1‑93 (MQ=255)
ccTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTg > 2:208669/1‑93 (MQ=255)
cTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTgg > 2:4176555/1‑93 (MQ=255)
cTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTgg < 1:2133598/93‑1 (MQ=255)
tCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGTGCATAATTTGGc > 2:1618377/1‑93 (MQ=255)
tCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGc > 2:1794625/1‑93 (MQ=255)
gCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCtt > 2:3116805/1‑93 (MQ=255)
ccGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTg > 2:2997196/1‑93 (MQ=255)
ccGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTg > 1:3637925/1‑93 (MQ=255)
ccGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTg > 2:561936/1‑93 (MQ=255)
cGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGa < 2:46819/93‑1 (MQ=255)
gTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAg > 1:46846/1‑93 (MQ=255)
tGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGc < 2:2012477/93‑1 (MQ=255)
gACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCa > 1:2559479/1‑93 (MQ=255)
gACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCa < 1:1737783/93‑1 (MQ=255)
gACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCa > 1:2263365/1‑93 (MQ=255)
aCCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCaa < 1:1103290/93‑1 (MQ=255)
ccATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCaaa < 1:4079201/93‑1 (MQ=255)
ccATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCaaa > 1:2973759/1‑93 (MQ=255)
aTTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATc < 2:378514/93‑1 (MQ=255)
tttGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCa > 1:1495223/1‑93 (MQ=255)
tgtGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCa < 2:1979658/91‑1 (MQ=255)
tGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCaaa < 1:185625/93‑1 (MQ=255)
tGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCaaa < 2:510105/93‑1 (MQ=255)
ggCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAaac < 2:316596/93‑1 (MQ=255)
gCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAaaca > 2:244339/1‑93 (MQ=255)
cGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAaacaa < 2:2579813/93‑1 (MQ=255)
cGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAaacaa < 1:1650797/93‑1 (MQ=255)
gAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAaacaac > 1:1130958/1‑93 (MQ=255)
gAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAaacaac > 1:3686720/1‑93 (MQ=255)
gAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAaacaac < 1:1816311/93‑1 (MQ=255)
aGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGc < 2:2652051/93‑1 (MQ=255)
aGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGc > 1:4397909/1‑93 (MQ=255)
gATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTa > 1:1771672/1‑93 (MQ=255)
gATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTa > 2:1362642/1‑93 (MQ=255)
gATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTa > 1:3257311/1‑93 (MQ=255)
gATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTa > 2:2829099/1‑93 (MQ=255)
aTACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTaa > 1:2778281/1‑93 (MQ=255)
aTACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTaa < 1:41542/93‑1 (MQ=255)
aTACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTaa > 1:4212073/1‑93 (MQ=255)
tACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAAt > 2:3320406/1‑93 (MQ=255)
cGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGc > 1:701161/1‑93 (MQ=255)
cGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGc > 2:3423428/1‑93 (MQ=255)
gTGATGTACTCAGCAGCAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGcc < 2:4398191/93‑1 (MQ=255)
gTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGcc > 2:1507555/1‑93 (MQ=255)
gTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGcc < 2:2475239/93‑1 (MQ=255)
gTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGcc > 1:375205/1‑93 (MQ=255)
tGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCg < 2:901141/93‑1 (MQ=255)
gATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGt > 1:2588451/1‑93 (MQ=255)
gTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCAt > 2:1286817/1‑93 (MQ=255)
atACACAGCAGCAAGAGCCGGGTCGGTGAGCTTTGTCTGAGTAGCCAGCGCATAATTTGGTTTGAGCAACTCAAACAGCGCTAATGCCGTCAt < 2:3996404/92‑1 (MQ=255)
aCTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATcc > 1:2740884/1‑93 (MQ=255)
cTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATccc < 1:472960/93‑1 (MQ=255)
tCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCg > 1:1963921/1‑93 (MQ=255)
tCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCg > 2:3510250/1‑93 (MQ=255)
aGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGcc > 1:3664880/1‑93 (MQ=255)
aGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGcc < 1:3068235/93‑1 (MQ=255)
aGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGcc > 1:4020968/1‑93 (MQ=255)
caacaaTTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTa < 2:4421922/93‑1 (MQ=255)
aacaaTTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTAc > 2:1152584/1‑93 (MQ=255)
aacaaTTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTAc < 2:4503132/93‑1 (MQ=255)
acaaTTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTAcc > 2:2267615/1‑93 (MQ=255)
acaaTTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTAcc < 2:42750/93‑1 (MQ=255)
acaaTTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTAcc > 1:1302093/1‑93 (MQ=255)
acaaTTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTAcc < 2:866321/93‑1 (MQ=255)
acaaTTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTAcc > 2:2122956/1‑93 (MQ=255)
aaTTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGc > 1:4374891/1‑93 (MQ=255)
aaTTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGc > 1:4053351/1‑93 (MQ=255)
tttCCGTGTCGGTAAGCTCTACCTGAGTCGCCAGCACATAATTTGGCTTGAGAAAAACAAACAACGCTAATCCCGTCATCCCGCCTACCGCAc < 2:2825238/93‑1 (MQ=255)
tttCCGGGTCGGTAAGCTCTCCCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCAc > 2:1547966/1‑93 (MQ=255)
tttCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCAc > 1:4474301/1‑93 (MQ=255)
tCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACtt < 1:1565459/93‑1 (MQ=255)
tCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACtt < 1:2277732/93‑1 (MQ=255)
ccGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTc < 1:3479853/93‑1 (MQ=255)
cGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTcg > 2:1404317/1‑93 (MQ=255)
gggTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTcgc < 1:2869523/93‑1 (MQ=255)
gggTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTcgc > 2:3038885/1‑93 (MQ=255)
gTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTcgccg < 1:611213/93‑1 (MQ=255)
ggTAAGCTCTACCTGAGTCACCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGCaa < 1:752807/93‑1 (MQ=255)
gTAAGCTGTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGCAAg < 2:454808/93‑1 (MQ=255)
gTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGCAAg < 2:2839260/93‑1 (MQ=255)
|
TTGCGGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAACTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGCAAGG > NC_000913/3145481‑3145660
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCTTTGCGGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAACTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGCAAGGTTGA > NC_000913/3145478‑3145664
|
TCTTTGCGGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAG < SRR4302535.3278426/94‑1 (MQ=60)
TTGCGGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTC < SRR4302535.1909400/94‑1 (MQ=60)
TTGCGGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTC < SRR4302535.1658615/94‑1 (MQ=60)
GCGGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTA > SRR4302535.4554859/1‑94 (MQ=60)
CGGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTAGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTAC > SRR4302535.2324053/1‑94 (MQ=60)
GGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACC < SRR4302535.2193379/94‑1 (MQ=60)
CGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACC < SRR4302535.1353236/94‑1 (MQ=60)
GGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCT < SRR4302535.1296481/94‑1 (MQ=60)
GGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCT > SRR4302535.4528981/1‑94 (MQ=60)
CTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGA > SRR4302535.2773409/1‑94 (MQ=60)
CTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGA > SRR4302535.2976218/1‑94 (MQ=60)
TTCACCAGATAACCCCGCACCTCGCCGTGACTATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAG < SRR4302535.1696570/94‑1 (MQ=60)
CCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGC > SRR4302535.188010/1‑94 (MQ=60)
AGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCA < SRR4302535.3420685/94‑1 (MQ=60)
AGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCA > SRR4302535.2021537/1‑94 (MQ=60)
AGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCA > SRR4302535.529727/1‑94 (MQ=60)
GATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAG > SRR4302535.4410309/1‑94 (MQ=60)
AACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGC > SRR4302535.1889325/1‑94 (MQ=60)
CCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCAT > SRR4302535.3762074/1‑94 (MQ=60)
CCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATA > SRR4302535.3359931/1‑94 (MQ=60)
CCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAA < SRR4302535.4065316/94‑1 (MQ=60)
CCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAA < SRR4302535.496391/94‑1 (MQ=60)
GCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATT > SRR4302535.3566638/1‑94 (MQ=60)
GCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATT > SRR4302535.2859400/1‑94 (MQ=60)
ACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTG < SRR4302535.3936122/94‑1 (MQ=60)
CCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGG < SRR4302535.4070834/94‑1 (MQ=60)
CCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGG > SRR4302535.4629050/1‑94 (MQ=60)
CTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGC < SRR4302535.2148975/94‑1 (MQ=60)
CGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTT < SRR4302535.4177161/94‑1 (MQ=60)
GCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTG > SRR4302535.3663130/1‑94 (MQ=60)
GCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTG > SRR4302535.3021583/1‑94 (MQ=60)
CCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGA < SRR4302535.472110/94‑1 (MQ=60)
CCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTCGCTTGA > SRR4302535.1397749/1‑94 (MQ=60)
CGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAG < SRR4302535.2282328/94‑1 (MQ=60)
CGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAG > SRR4302535.47201/1‑94 (MQ=60)
TGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCA > SRR4302535.2279491/1‑94 (MQ=60)
TGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCA > SRR4302535.2577904/1‑94 (MQ=60)
TGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCA > SRR4302535.4332265/1‑94 (MQ=60)
GACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAA < SRR4302535.1750343/94‑1 (MQ=60)
ACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAA > SRR4302535.2994633/1‑94 (MQ=60)
ACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAA < SRR4302535.1111172/94‑1 (MQ=60)
CCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAAT < SRR4302535.4107107/94‑1 (MQ=60)
CATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATC < SRR4302535.1787662/94‑1 (MQ=60)
CATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATC > SRR4302535.1892155/1‑94 (MQ=60)
ATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCA < SRR4302535.3687536/94‑1 (MQ=60)
ATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCA > SRR4302535.837322/1‑94 (MQ=60)
ATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCA > SRR4302535.1505973/1‑94 (MQ=60)
TGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAAC < SRR4302535.186905/94‑1 (MQ=60)
CGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAAC > SRR4302535.1139031/1‑94 (MQ=60)
CGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAAC < SRR4302535.1297755/94‑1 (MQ=60)
CGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAAC < SRR4302535.1662734/94‑1 (MQ=60)
CGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAAC > SRR4302535.3712229/1‑94 (MQ=60)
GAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACG < SRR4302535.1829440/94‑1 (MQ=60)
AAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGC > SRR4302535.4428012/1‑94 (MQ=60)
AGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCT > SRR4302535.732705/1‑94 (MQ=60)
GGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTA > SRR4302535.3279945/1‑94 (MQ=60)
GGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTA > SRR4302535.1784510/1‑94 (MQ=60)
GATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAA > SRR4302535.2798064/1‑94 (MQ=60)
GATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAA > SRR4302535.4240901/1‑94 (MQ=60)
ATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAAT < SRR4302535.41856/94‑1 (MQ=60)
ACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGC > SRR4302535.706077/1‑94 (MQ=60)
CGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCC < SRR4302535.1322742/94‑1 (MQ=60)
CGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCC > SRR4302535.377802/1‑94 (MQ=60)
CGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCC > SRR4302535.4083922/1‑94 (MQ=60)
TGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGT > SRR4302535.3433012/1‑94 (MQ=60)
TGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGT > SRR4302535.1779428/1‑94 (MQ=60)
TGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGT > SRR4302535.1277031/1‑94 (MQ=60)
TGATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGT > SRR4302535.2607040/1‑94 (MQ=60)
ATGTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCA > SRR4302535.676151/1‑94 (MQ=60)
GTACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGACGTCATC < SRR4302535.2585340/94‑1 (MQ=60)
TACTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCC > SRR4302535.2760419/1‑94 (MQ=60)
CTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCG < SRR4302535.1948765/94‑1 (MQ=60)
CTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCG > SRR4302535.1978080/1‑94 (MQ=60)
CTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCG < SRR4302535.476271/94‑1 (MQ=60)
CTCAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCC > SRR4302535.4239137/1‑94 (MQ=60)
CAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCC > SRR4302535.4048481/1‑94 (MQ=60)
CAGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCC > SRR4302535.3690259/1‑94 (MQ=60)
AGCAACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCT < SRR4302535.3089669/94‑1 (MQ=60)
AACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACC > SRR4302535.2255469/1‑94 (MQ=60)
AACAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACC > SRR4302535.1311393/1‑94 (MQ=60)
CAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGC > SRR4302535.4404824/1‑94 (MQ=60)
CAATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGC > SRR4302535.4081107/1‑94 (MQ=60)
ATTTCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCAC > SRR4302535.4505002/1‑94 (MQ=60)
TCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTC < SRR4302535.1576762/94‑1 (MQ=60)
TCCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTC < SRR4302535.2293999/94‑1 (MQ=60)
CCGGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCG < SRR4302535.3504027/94‑1 (MQ=60)
GGGTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCC < SRR4302535.2889845/94‑1 (MQ=60)
GTCGGTAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGC < SRR4302535.615471/94‑1 (MQ=60)
GGTAAGCTCTACCTGAGTCACCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGCAAG < SRR4302535.758106/94‑1 (MQ=60)
TAAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGCAAGGT > SRR4302535.3546805/1‑94 (MQ=60)
AAGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGCAAGGTT < SRR4302535.4220909/94‑1 (MQ=60)
AGCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGCAAGGTTG < SRR4302535.4267880/94‑1 (MQ=60)
GCTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGCAAGGTTGA > SRR4302535.4060292/1‑94 (MQ=60)
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TCTTTGCGGGCTTCACCAGATAACCCCGCACCTCGCCGTGACCATTTGGCGAAGGATACGTGATGTACTCAGCAACAATTTCCGGGTCGGTAAACTCTACCTGAGTCGCCAGCGCATAATTTGGCTTGAGCAAATCAAACAACGCTAATGCCGTCATCCCGCCTACCGCACTTCGCCGCAAGGTTGA > NC_000913/3145478‑3145664
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
