Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,159,481	A→G	M402T (ATG→ACG)	sufI ←	suppressor of ftsI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,159,481	0	A	G	100.0%	568.8 / NA	183	M402T (ATG→ACG)	sufI	suppressor of ftsI
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (95/88); total (95/88)

Only 100 of 194 total aligned reads displayed.

GCTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACATTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAATACGG  >  NC_000913/3159392‑3159570

gcTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTa                                                                                        >  1:1318526/1‑93 (MQ=255)

gcTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTa                                                                                        >  2:3700179/1‑93 (MQ=255)

 cTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTAc                                                                                       <  1:3521042/93‑1 (MQ=255)

 cTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTAc                                                                                       >  1:571636/1‑93 (MQ=255)

  tCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACg                                                                                      >  1:3450306/1‑93 (MQ=255)

  tCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACg                                                                                      >  2:2647125/1‑93 (MQ=255)

     aCTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCt                                                                                   >  1:2425260/1‑93 (MQ=255)

     aCTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCt                                                                                   >  1:2091004/1‑93 (MQ=255)

     aCTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCt                                                                                   <  1:159386/93‑1 (MQ=255)

      cTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCtt                                                                                  >  2:4539476/1‑93 (MQ=255)

      cTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCtt                                                                                  >  2:3769548/1‑93 (MQ=255)

       ttGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTc                                                                                 >  2:4263544/1‑93 (MQ=255)

       ttGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTc                                                                                 >  1:284329/1‑93 (MQ=255)

       ttGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTc                                                                                 >  1:3243827/1‑93 (MQ=255)

       ttGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTc                                                                                 >  2:2294477/1‑93 (MQ=255)

       ttGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTc                                                                                 <  2:3551030/93‑1 (MQ=255)

        tGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCa                                                                                <  2:3936518/93‑1 (MQ=255)

         gTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCaa                                                                               <  1:4228439/93‑1 (MQ=255)

            cGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAatat                                                                            >  1:1845272/1‑93 (MQ=255)

            cGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAatat                                                                            <  2:2390472/93‑1 (MQ=255)

             gTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATg                                                                           >  1:1200059/1‑93 (MQ=255)

             gTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATg                                                                           >  1:1085029/1‑93 (MQ=255)

             gTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATg                                                                           >  2:2833541/1‑93 (MQ=255)

              tCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATgg                                                                          >  2:4191909/1‑93 (MQ=255)

              tCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATgg                                                                          >  1:4336717/1‑93 (MQ=255)

                aaCCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGaa                                                                        <  1:2071933/93‑1 (MQ=255)

                aaCCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGaa                                                                        <  1:4601741/93‑1 (MQ=255)

                 aCCCAAACGGTATCTTTCCATCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAAc                                                                       >  2:2666174/1‑93 (MQ=255)

                 aCCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAAc                                                                       <  1:4049468/93‑1 (MQ=255)

                 aCCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAAc                                                                       >  2:3570401/1‑93 (MQ=255)

                    ctaaCGGCATCTTTCCAGCCTCTGTGTTCCGGGAACGGCATCGCGGCATTCACGATACGGAGCTGGAACGTTAGGACTAGAATATCGAACggt                                                                    >  2:782868/3‑91 (MQ=255)

                    cAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCt                                                                    >  2:3204895/1‑93 (MQ=255)

                    cAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCt                                                                    >  1:731618/1‑93 (MQ=255)

                     aaaCGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCtt                                                                   <  1:4164688/93‑1 (MQ=255)

                     aaaCGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCtt                                                                   <  1:2176681/93‑1 (MQ=255)

                     aaaCGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCtt                                                                   <  1:121687/93‑1 (MQ=255)

                     aaaCGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCtt                                                                   >  2:2258097/1‑93 (MQ=255)

                      aaCGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTg                                                                  >  2:2135582/1‑93 (MQ=255)

                      aaCGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTg                                                                  >  1:4395164/1‑93 (MQ=255)

                      aaCGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTg                                                                  >  2:4299986/1‑93 (MQ=255)

                      aaCGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTg                                                                  <  1:2699663/93‑1 (MQ=255)

                       aCGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGc                                                                 <  2:2007725/93‑1 (MQ=255)

                       aCGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGc                                                                 <  1:1450475/93‑1 (MQ=255)

                       aCGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGc                                                                 >  1:286383/1‑93 (MQ=255)

                       aCGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCAGCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGc                                                                 <  1:697538/93‑1 (MQ=255)

                         ggTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCgg                                                               >  2:250345/1‑93 (MQ=255)

                          gTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGc                                                              >  2:622472/1‑93 (MQ=255)

                          gTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGc                                                              >  2:2528547/1‑93 (MQ=255)

                           tATCTTTCCAGCCTCTGTCTTCCGGGCACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGTAACGCTTGCGGCt                                                             >  2:578574/1‑93 (MQ=255)

                             tCTTTCCAGCCTCTGTCTTCCGGGAAAGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAAAGCTTGCGGCTCg                                                           >  1:3909814/1‑93 (MQ=255)

                               tttCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTcccc                                                         >  1:12781/1‑90 (MQ=255)

                               tttCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCgcc                                                         >  2:2065256/1‑91 (MQ=255)

                                 tCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGcccc                                                       >  2:910221/1‑92 (MQ=255)

                                 tCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCcg                                                       <  1:2281626/93‑1 (MQ=255)

                                  ccAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCcgc                                                      <  2:4285526/93‑1 (MQ=255)

                                     gCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCcgccgccgg                                                   >  1:1498671/1‑90 (MQ=255)

                                      ccTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCCCcccgcgg                                                  >  1:1332267/1‑92 (MQ=255)

                                       ctctGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTa                                                 <  1:887405/93‑1 (MQ=255)

                                       ctctGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCTCcgcgccgg                                                 >  1:2111490/1‑90 (MQ=255)

                                        tctGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCTCcgcgcggcc                                                >  2:1929611/1‑90 (MQ=255)

                                        tctGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCGCCGCGCGGAc                                                >  1:193557/1‑93 (MQ=255)

                                             cTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTcc                                           <  1:3325653/93‑1 (MQ=255)

                                              ttCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCCCCCCGCCTGCCGTccc                                          >  1:2519789/1‑92 (MQ=255)

                                                ccGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGc                                        <  1:527925/93‑1 (MQ=255)

                                                 cGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCATCCCCGCGTACCGTCCAGCg                                       >  2:933807/1‑93 (MQ=255)

                                                  gggAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGt                                      <  2:72931/93‑1 (MQ=255)

                                                  gggAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCGCCCCGCGGACCGCCCCGCGt                                      >  1:3785466/1‑93 (MQ=255)

                                                     aaCGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAGCGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTcc                                   <  1:528419/93‑1 (MQ=255)

                                                             cgcgCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTcc                           <  1:3205690/93‑1 (MQ=255)

                                                              gcgcCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCt                          <  1:1716882/93‑1 (MQ=255)

                                                              gcgcCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCt                          <  1:618063/93‑1 (MQ=255)

                                                               cgcCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCtt                         <  1:2653179/93‑1 (MQ=255)

                                                               cgcCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCtt                         <  1:3914353/93‑1 (MQ=255)

                                                               caccATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCtt                         <  1:1001574/91‑1 (MQ=255)

                                                                 ccATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTtgc                       <  1:330191/93‑1 (MQ=255)

                                                                 ccATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCCCCCCGCGCACCGTCCCGCGTTCCCCccttcctttc                       >  1:3488464/1‑91 (MQ=255)

                                                                  cATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTtgct                      <  2:224719/93‑1 (MQ=255)

                                                                  cATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGGCCCCCCGTACCGGCCCGCGCTCCCACGCTCTTttct                      >  2:2597424/1‑93 (MQ=255)

                                                                  cATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCTCCCCCCCGACCGTCCCACGTTTCCCCGCTCCTttct                      >  2:3244070/1‑93 (MQ=255)

                                                                  cATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCCCCCCGCGCGCCCGCCCGCGTTCCCACCCTCCTttct                      >  2:3045270/1‑93 (MQ=255)

                                                                    ttCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCCGCGTTCCCCCCTTCCTttctgc                    >  1:2987069/1‑93 (MQ=255)

                                                                    ttCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTtgctgc                    <  1:1897626/93‑1 (MQ=255)

                                                                    ttCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCCCGCGGAACGTCCCGCGTTCCCCCCCTCCCtgcttg                    >  1:2012120/1‑91 (MQ=255)

                                                                    ttCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCTCCGCGCGTACCGTCCAGCGGTCCCCCCCTCCTttctgg                    >  2:884040/1‑92 (MQ=255)

                                                                      cACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTgcgc                  <  1:2749818/93‑1 (MQ=255)

                                                                        cGTTACGGAGCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCgg                <  2:4415768/93‑1 (MQ=255)

                                                                          ttACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTg              <  2:1626126/93‑1 (MQ=255)

                                                                          ttACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTg              <  2:1216965/93‑1 (MQ=255)

                                                                          ttACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCTCCGCGCGGACCCCCCACCGGTCCCCCCTTCCTTTCTTCGCgggg              >  2:3451118/1‑91 (MQ=255)

                                                                           tACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGa             <  1:1021644/93‑1 (MQ=255)

                                                                           tACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGa             <  2:2958745/93‑1 (MQ=255)

                                                                           tACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGa             <  1:1102131/93‑1 (MQ=255)

                                                                           tACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGa             <  1:2586226/93‑1 (MQ=255)

                                                                               gATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATc         <  1:2673131/93‑1 (MQ=255)

                                                                                aTCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCGCCGCGCGTACCCTCCCGCGTTCCCACGCTCCCTTTTGCGCCGTGACATCa        >  1:426169/1‑93 (MQ=255)

                                                                                 tCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCaa       <  2:1119395/93‑1 (MQ=255)

                                                                                  cTGGGACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAAt      <  1:962684/93‑1 (MQ=255)

                                                                                   tGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAATa     <  2:4595298/93‑1 (MQ=255)

                                                                                   tGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAATa     <  1:2494624/93‑1 (MQ=255)

                                                                                      aaCGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAATACgg  <  2:4089538/93‑1 (MQ=255)

GCTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACATTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAATACGG  >  NC_000913/3159392‑3159570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCAGCTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACATTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAATACGGTTGA  >  NC_000913/3159388‑3159574

AGCAGCTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACG                                                                                               >  SRR4302535.1828138/1‑94 (MQ=60)

AGCAGCTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACG                                                                                               >  SRR4302535.3284223/1‑94 (MQ=60)

   AGCTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTA                                                                                            >  SRR4302535.1327951/1‑94 (MQ=60)

   AGCTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGCCATCGCGCCATTCACGTTACGGATCTGGAACGTTA                                                                                            >  SRR4302535.1337757/1‑94 (MQ=60)

    GCTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTAC                                                                                           >  SRR4302535.575650/1‑94 (MQ=60)

     CTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACG                                                                                          <  SRR4302535.3545497/94‑1 (MQ=60)

     CTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACG                                                                                          >  SRR4302535.3474290/1‑94 (MQ=60)

     CTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACG                                                                                          <  SRR4302535.1342261/94‑1 (MQ=60)

     CTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACG                                                                                          <  SRR4302535.3311002/94‑1 (MQ=60)

      TCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGC                                                                                         >  SRR4302535.2603960/1‑94 (MQ=60)

        CACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCT                                                                                       >  SRR4302535.2106072/1‑94 (MQ=60)

        CACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCT                                                                                       >  SRR4302535.2442734/1‑94 (MQ=60)

         ACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTT                                                                                      <  SRR4302535.160504/94‑1 (MQ=60)

         ACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTT                                                                                      >  SRR4302535.2211704/1‑94 (MQ=60)

         ACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTT                                                                                      >  SRR4302535.1563403/1‑94 (MQ=60)

         ACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTAACGTTACGGATCTGGAACGTTACGCCTT                                                                                      >  SRR4302535.1677984/1‑94 (MQ=60)

          CTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTC                                                                                     >  SRR4302535.3266360/1‑94 (MQ=60)

          CTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTC                                                                                     >  SRR4302535.286314/1‑94 (MQ=60)

            TGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAA                                                                                   >  SRR4302535.1190082/1‑94 (MQ=60)

             GTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAAT                                                                                  <  SRR4302535.4257377/94‑1 (MQ=60)

             GTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAAT                                                                                  <  SRR4302535.4145456/94‑1 (MQ=60)

             GTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAAT                                                                                  >  SRR4302535.4349165/1‑94 (MQ=60)

              TCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATA                                                                                 >  SRR4302535.579274/1‑94 (MQ=60)

               CCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATAT                                                                                >  SRR4302535.1858572/1‑94 (MQ=60)

               CCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATAT                                                                                <  SRR4302535.1466866/94‑1 (MQ=60)

                CGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATG                                                                               <  SRR4302535.2447635/94‑1 (MQ=60)

                CGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATG                                                                               >  SRR4302535.1092743/1‑94 (MQ=60)

                CGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATG                                                                               <  SRR4302535.1105224/94‑1 (MQ=60)

                CGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATG                                                                               >  SRR4302535.1208658/1‑94 (MQ=60)

                 GTCACCCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGG                                                                              <  SRR4302535.1224387/94‑1 (MQ=60)

                 GTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGG                                                                              >  SRR4302535.2331658/1‑94 (MQ=60)

                 GTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGG                                                                              <  SRR4302535.3363292/94‑1 (MQ=60)

                 GTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGG                                                                              >  SRR4302535.4366379/1‑94 (MQ=60)

                  TCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGC                                                                             >  SRR4302535.4534537/1‑94 (MQ=60)

                   CAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAA                                                                            >  SRR4302535.27132/1‑94 (MQ=60)

                    AACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAAC                                                                           <  SRR4302535.4633037/94‑1 (MQ=60)

                    AACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAAC                                                                           <  SRR4302535.2086863/94‑1 (MQ=60)

                     ACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACG                                                                          <  SRR4302535.1038348/94‑1 (MQ=60)

                     ACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACG                                                                          <  SRR4302535.4077192/94‑1 (MQ=60)

                       CCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCT                                                                        >  SRR4302535.736755/1‑94 (MQ=60)

                         AAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTG                                                                      >  SRR4302535.4425240/1‑94 (MQ=60)

                         AAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTG                                                                      <  SRR4302535.122540/94‑1 (MQ=60)

                         AAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTG                                                                      <  SRR4302535.4193205/94‑1 (MQ=60)

                         AAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTG                                                                      <  SRR4302535.886170/94‑1 (MQ=60)

                         AAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTG                                                                      <  SRR4302535.2192237/94‑1 (MQ=60)

                         AAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTG                                                                      >  SRR4302535.2000578/1‑94 (MQ=60)

                         AAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTG                                                                      >  SRR4302535.56119/1‑94 (MQ=60)

                          AACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGC                                                                     <  SRR4302535.2718956/94‑1 (MQ=60)

                          AACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGC                                                                     >  SRR4302535.288387/1‑94 (MQ=60)

                           agggtgtgTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCGTGCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCG                                                                    <  SRR4302535.646246/86‑1 (MQ=60)

                           ACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCG                                                                    <  SRR4302535.1460851/94‑1 (MQ=60)

                           ACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCAGCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCG                                                                    <  SRR4302535.702433/94‑1 (MQ=60)

                             GGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGC                                                                  >  SRR4302535.1826966/1‑94 (MQ=60)

                              GTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCT                                                                 <  SRR4302535.2106529/94‑1 (MQ=60)

                              GTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCT                                                                 >  SRR4302535.2891564/1‑94 (MQ=60)

                               TATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTC                                                                >  SRR4302535.3937639/1‑94 (MQ=60)

                                ATCTTTCCAGCCTCTGTCTTCCGGGAAAGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAAAGCTTGCGGCTCG                                                               >  SRR4302535.3936588/1‑94 (MQ=60)

                                  CTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCccc                                                             >  SRR4302535.12878/1‑91 (MQ=60)

                                   TTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCcccc                                                            >  SRR4302535.3479267/1‑90 (MQ=60)

                                   TTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGcgc                                                            >  SRR4302535.3120272/1‑91 (MQ=60)

                                   TTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCC                                                            <  SRR4302535.2183137/94‑1 (MQ=60)

                                     TCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGC                                                          <  SRR4302535.2297925/94‑1 (MQ=60)

                                      CCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCctcccgc                                                         >  SRR4302535.25215/1‑87 (MQ=60)

                                      CCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCcgccggg                                                         >  SRR4302535.1070746/1‑87 (MQ=60)

                                      CCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCccccccc                                                         >  SRR4302535.14590/1‑87 (MQ=60)

                                        AGCCTCTGTCTTCCGGGAACGGCATCGCGGCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGatcgcccccacg                                                       >  SRR4302535.3149618/1‑82 (MQ=60)

                                        AGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCcgccgccgg                                                       >  SRR4302535.1509451/1‑85 (MQ=60)

                                        AGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCcctcccccg                                                       >  SRR4302535.4585005/1‑85 (MQ=60)

                                         GCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCccccccgcgg                                                      >  SRR4302535.1341770/1‑84 (MQ=60)

                                          CCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCTCCGCGCcgg                                                     >  SRR4302535.2126732/1‑91 (MQ=60)

                                           CTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCcccccccgcgac                                                    >  SRR4302535.2960083/1‑82 (MQ=60)

                                           CTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTAC                                                    <  SRR4302535.893688/94‑1 (MQ=60)

                                           CTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCTCCGCGCGGAC                                                    >  SRR4302535.1261246/1‑94 (MQ=60)

                                           CTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCGCCGCGCGGAC                                                    >  SRR4302535.194893/1‑94 (MQ=60)

                                             CTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCctcccgccgtgtcc                                                  >  SRR4302535.419094/1‑80 (MQ=60)

                                             CTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCccccgcccgtgccc                                                  >  SRR4302535.2732422/1‑80 (MQ=60)

                                             CTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGcccccgcgccccg                                                  >  SRR4302535.3407267/1‑81 (MQ=60)

                                              TGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCccccccgccggccgg                                                 >  SRR4302535.978559/1‑79 (MQ=60)

                                                TCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCccccgcgcgcgcccccc                                               >  SRR4302535.1213443/1‑77 (MQ=60)

                                                 CTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCtcccccgcggcgccgccc                                              >  SRR4302535.2230032/1‑76 (MQ=60)

                                                 CTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCccccccgcctgccgtccc                                              >  SRR4302535.2537949/1‑76 (MQ=60)

                                                 CTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCA                                              <  SRR4302535.4389873/94‑1 (MQ=60)

                                                 CTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCA                                              <  SRR4302535.3348796/94‑1 (MQ=60)

                                                 CTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCGCCCCGCGTACCGTCCC                                              >  SRR4302535.3648582/1‑94 (MQ=60)

                                                  TTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAG                                             <  SRR4302535.1940167/94‑1 (MQ=60)

                                                  TTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAG                                             <  SRR4302535.1313012/94‑1 (MQ=60)

                                                   TCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCccccccccggtccccgccgc                                            >  SRR4302535.518889/1‑74 (MQ=60)

                                                    CCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCG                                           <  SRR4302535.531612/94‑1 (MQ=60)

                                                     CGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCcgccccgcggaccgccccgcgt                                          >  SRR4302535.3811578/1‑72 (MQ=60)

                                                     CGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCcccccccccgtcccgcccagct                                          >  SRR4302535.3312665/1‑72 (MQ=60)

                                                       GGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCccccccccgcaccgccccgccgtc                                        >  SRR4302535.4287170/1‑70 (MQ=60)

                                                         AACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAGCGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCC                                      <  SRR4302535.532111/94‑1 (MQ=60)

                                                         AACGGCATCGCGCCATTCACGCTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCctcctccggggccggccggcgctccc                                      >  SRR4302535.3973914/1‑68 (MQ=60)

                                                          ACGGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGTAACGCTTGCGGCTCctcctcccggtccggccaacgcgcacc                                     >  SRR4302535.3280241/1‑67 (MQ=60)

                                                            GGCATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCctccccgccgaccgtcccgcgctcccacc                                   >  SRR4302535.4260013/1‑65 (MQ=60)

                                                              CATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCctccccgcgggcccgccaccgctgccccgct                                 >  SRR4302535.1046770/1‑63 (MQ=60)

                                                              CATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCcgcctgccggcccctccacccgttcccctgt                                 >  SRR4302535.1900768/1‑63 (MQ=60)

                                                              CATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCccccccgccgaccggcccgcgcctccacact                                 >  SRR4302535.498993/1‑63 (MQ=60)

                                                              CATCGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTT                                 <  SRR4302535.2856142/94‑1 (MQ=60)

                                                                 CGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCT                              <  SRR4302535.2877308/94‑1 (MQ=60)

                                                                 CGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCT                              <  SRR4302535.2677484/94‑1 (MQ=60)

                                                                 CGCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCT                              <  SRR4302535.3227890/94‑1 (MQ=60)

                                                                  GCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTT                             <  SRR4302535.622360/94‑1 (MQ=60)

                                                                  GCGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTT                             <  SRR4302535.1729304/94‑1 (MQ=60)

                                                                   CGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCccgcgcggcaaccgcaccgcgttgccccgtaactct                            >  SRR4302535.3376122/1‑58 (MQ=60)

                                                                   CGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTG                            <  SRR4302535.3941142/94‑1 (MQ=60)

                                                                   CGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTG                            <  SRR4302535.2672184/94‑1 (MQ=60)

                                                                   CGCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCTCCCCGCGGACCGCCCCGCGTTCCCcccctccctt                            >  SRR4302535.595349/1‑84 (MQ=60)

                                                                   CACCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTG                            <  SRR4302535.1008692/94‑1 (MQ=60)

                                                                    GCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCCCCCCGCGCACCGTCCCGCGTTCCCCCCTTCCTTTC                           >  SRR4302535.3512683/1‑94 (MQ=60)

                                                                    GCCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTACGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGC                           <  SRR4302535.3331343/94‑1 (MQ=60)

                                                                     CCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCT                          <  SRR4302535.261491/94‑1 (MQ=60)

                                                                     CCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCT                          <  SRR4302535.1906500/94‑1 (MQ=60)

                                                                     CCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCT                          <  SRR4302535.3535370/94‑1 (MQ=60)

                                                                     CCATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCT                          <  SRR4302535.332479/94‑1 (MQ=60)

                                                                      CATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGcccccgcggcccgtccaccggtccccccttgcttgctg                         >  SRR4302535.508809/1‑56 (MQ=60)

                                                                       ATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCCGCGTTCCCCCCTTCCTTTCTGC                        >  SRR4302535.3008018/1‑94 (MQ=60)

                                                                       ATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCCGCGTTCCCACGTTtccttcttc                        >  SRR4302535.4395309/1‑85 (MQ=60)

                                                                       ATTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCCCGCGGAACGTCCCGCGTTCCCcccctccctgcttg                        >  SRR4302535.2026616/1‑80 (MQ=60)

                                                                        TTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCG                       <  SRR4302535.1911277/94‑1 (MQ=60)

                                                                        TTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCG                       <  SRR4302535.4201710/94‑1 (MQ=60)

                                                                        TTCACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGGCCGCGCGgaccggcccacgcttccccggtcctttcttgc                       >  SRR4302535.918818/1‑62 (MQ=60)

                                                                          CACGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCG                     <  SRR4302535.2769421/94‑1 (MQ=60)

                                                                            CGTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGT                   <  SRR4302535.2103953/94‑1 (MQ=60)

                                                                             GTTACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCTCCCCGCGTAGCGTCCAccggttcccccctcctttctgcgccgtg                  >  SRR4302535.686246/1‑66 (MQ=60)

                                                                               TACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGAC                <  SRR4302535.1028903/94‑1 (MQ=60)

                                                                               TACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGAC                <  SRR4302535.2604800/94‑1 (MQ=60)

                                                                               TACGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGAC                <  SRR4302535.1110006/94‑1 (MQ=60)

                                                                                 CGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCcccccccgggaccctcccgcggttccacgttcctcctcgcgcgcgaacca              >  SRR4302535.1402028/1‑44 (MQ=60)

                                                                                 CGGATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACAT              <  SRR4302535.3892527/94‑1 (MQ=60)

                                                                                   GATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCA            <  SRR4302535.2692256/94‑1 (MQ=60)

                                                                                   GATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCGCCGCGCGTACCCTCCCGCGTTCCCACGCTCCCTTTTGCGCCGTGACATCA            >  SRR4302535.429138/1‑94 (MQ=46)

                                                                                    ATCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCCTCCGCGCGGACCGTCCAGCGTTCCCCCGTTCCcttcttcccgggggcatcaa           >  SRR4302535.4063010/1‑74 (MQ=60)

                                                                                     TCTGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAAT          <  SRR4302535.731883/94‑1 (MQ=60)

                                                                                      CTGGGACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAATA         <  SRR4302535.969522/94‑1 (MQ=60)

                                                                                       TGGAACGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAATAC        <  SRR4302535.2512623/94‑1 (MQ=60)

                                                                                            CGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAATACGGTTG   <  SRR4302535.3468012/94‑1 (MQ=60)

                                                                                            CGTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAATACGGTTG   <  SRR4302535.2879409/94‑1 (MQ=60)

                                                                                            CGTTACGCCTTCAATATGGAACGCTTGCGGCTCGGCCGCGCGGACCCTCCAGCcgtcccccgttccctgcttcgcggggaaatccaaaaggttt   >  SRR4302535.1373695/1‑53 (MQ=45)

                                                                                            CGTTACGCCTTCAATATGGAACGCTTGCGGCTCCTCCCCGCGTACCGTCCCGCGTTCCCACGTTCCCTGCTGCGCGGGGACATCAATAAAGTTG   >  SRR4302535.4374462/1‑94 (MQ=60)

                                                                                             GTTACGCCTTCAATATGGAACGCTTGCGGCTCatccccgcggcacgaccagcgctccccccgcccttgccacacggtgtcatccatacggttga  >  SRR4302535.1955834/1‑32 (MQ=60)

                                                                                             GTTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAATACGGTTGA  <  SRR4302535.1360722/94‑1 (MQ=60)

AGCAGCTCCACTTGTCCGTCAACCCAAACGGTATCTTTCCAGCCTCTGTCTTCCGGGAACGGCATCGCGCCATTCACGTTACGGATCTGGAACATTACGCCTTCAATATGGAACGCTTGCGGCTCGTCCGCGCGTACCGTCCAGCGTTCCCACGTTCCTTGCTGCGCGGTGACATCAATACGGTTGA  >  NC_000913/3159388‑3159574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`