Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,183,028 |
T→C |
V70A (GTC→GCC) |
b3042 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,183,028 | 0 | T | C | 99.3%
| 443.6
/ ‑4.7
| 144 | V70A (GTC→GCC) | b3042 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (71/72); total (71/73) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.36e-01 |
Only 100 of 150 total aligned reads displayed.
ATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAG > NC_000913/3182938‑3183117
|
aTGTGGAGAAAAAAATCCGCCAACCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGccc < 1:4460297/93‑1 (MQ=255)
gtgGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTg > 2:4134545/1‑93 (MQ=255)
tgGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCTAGCCCTGt < 2:4571626/93‑1 (MQ=255)
tgGAGAAAAAAACCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTGGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGt < 2:2997399/93‑1 (MQ=255)
aagaAAAAAACCCGCCAACCCCTACAAGCGCAGCGGCCGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTa < 2:2654008/92‑1 (MQ=255)
agaAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTAc > 2:3274848/1‑93 (MQ=255)
agaAAAAAATCCGCCAAACCCGACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTAc < 2:387371/93‑1 (MQ=255)
gaAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACg > 1:2498179/1‑93 (MQ=255)
aaaaaaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACg < 2:4316901/92‑1 (MQ=255)
aaaaaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACgg > 1:1993557/1‑93 (MQ=255)
aaaaaCCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGAc < 1:226949/93‑1 (MQ=255)
aaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACt > 2:3719788/1‑93 (MQ=255)
aaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTc > 1:4350651/1‑93 (MQ=255)
aaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCg > 2:4195733/1‑93 (MQ=255)
aaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCg > 2:1864467/1‑93 (MQ=255)
aaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCg > 2:4002684/1‑93 (MQ=255)
acccGCCAACCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGt < 2:946955/91‑1 (MQ=255)
aTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGt < 1:3027177/93‑1 (MQ=255)
tCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTg > 1:1553804/1‑93 (MQ=255)
gCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGaaa > 2:3814706/1‑93 (MQ=255)
ccAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGaaaa > 1:1889257/1‑93 (MQ=255)
ccccTGCAGGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTg < 2:3823100/92‑1 (MQ=255)
aCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTg > 1:1232838/1‑93 (MQ=255)
cccTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTgg > 2:3069471/1‑93 (MQ=255)
cccAACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTgg < 1:56177/93‑1 (MQ=255)
cTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGgcg > 1:667321/1‑93 (MQ=255)
tACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGgcgc > 2:400458/1‑93 (MQ=255)
tACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGgcgc < 2:3687163/93‑1 (MQ=255)
tACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGgcgc > 2:3606176/1‑93 (MQ=255)
tACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGgcgc > 1:4137486/1‑93 (MQ=255)
tACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGgcgc < 1:3747860/93‑1 (MQ=255)
aCAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCgct > 2:1606505/1‑93 (MQ=255)
aCAAGCCCAGCGGCCGCGCGTCGACCTTGTAAGCCGGGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCgct < 1:816972/93‑1 (MQ=255)
aaGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCgctgc < 1:4230609/93‑1 (MQ=255)
aGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCgctgct > 2:1967684/1‑93 (MQ=255)
gcgcAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCtt < 1:465613/93‑1 (MQ=255)
gcgcAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCtt < 1:3812273/93‑1 (MQ=255)
gcgcAGCTGACGCGCCTCGACCTTGTAACCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCtt < 1:1122040/93‑1 (MQ=255)
gcAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGa > 2:4501349/1‑93 (MQ=255)
gcAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGa > 2:2721080/1‑93 (MQ=255)
cAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGaa < 1:2389363/93‑1 (MQ=255)
cgCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAAc < 1:4179204/92‑1 (MQ=255)
aGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAAc < 1:1609513/93‑1 (MQ=255)
aGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAAc < 1:2623214/93‑1 (MQ=255)
cTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACaa < 2:1709391/93‑1 (MQ=255)
tGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACaaa > 1:1017413/1‑93 (MQ=255)
gtcgcgCCTCGATCGCTTAAGCCGTGAAGATTACGACGTCGAACCGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAg < 2:2389788/91‑1 (MQ=255)
cgcgcgCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAg < 2:2516453/91‑1 (MQ=255)
aCGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGa < 2:450218/93‑1 (MQ=255)
aCGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGa < 2:2295232/93‑1 (MQ=255)
cgcCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATc < 1:2058589/93‑1 (MQ=255)
cgcCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATc < 2:4304002/93‑1 (MQ=255)
cgcCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATc < 1:3961765/93‑1 (MQ=255)
cgcCTCGACCTTGTAAGCCGTGAAGAGTTCCACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATc < 2:787931/93‑1 (MQ=255)
gcCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAGAACTGGCGCTGCTTGAACAAAGAATCa < 1:1827335/93‑1 (MQ=255)
gcCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCa < 2:3040364/93‑1 (MQ=255)
gcCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCa < 1:1556472/93‑1 (MQ=255)
gcCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCa < 2:736203/93‑1 (MQ=255)
ccTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAg > 2:1799235/1‑93 (MQ=255)
ccTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAg < 1:3940785/93‑1 (MQ=255)
cTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGc > 1:1719821/1‑93 (MQ=255)
tCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCg < 1:4458578/93‑1 (MQ=255)
aCCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAAc < 1:1800969/93‑1 (MQ=255)
aCCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAAc > 2:3257795/1‑93 (MQ=255)
aCCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAAc > 2:4044592/1‑93 (MQ=255)
ccTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACt > 2:1929021/1‑93 (MQ=255)
ccTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACt > 1:2911093/1‑93 (MQ=255)
gTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaa > 2:2973065/1‑93 (MQ=255)
gTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaa > 1:1399459/1‑93 (MQ=255)
tAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaaa < 1:104166/93‑1 (MQ=255)
tAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaaa < 2:3398766/93‑1 (MQ=255)
tAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaaa > 1:4556417/1‑93 (MQ=255)
aGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAAt < 2:93006/93‑1 (MQ=255)
gCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATc < 1:36355/93‑1 (MQ=255)
gCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATc < 2:1908811/93‑1 (MQ=255)
gTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa < 2:3493684/93‑1 (MQ=255)
gTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa < 1:2609747/93‑1 (MQ=255)
gTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTAGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa < 2:774556/93‑1 (MQ=255)
gAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGt > 1:1254590/1‑93 (MQ=255)
aaGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTa > 1:3120133/1‑93 (MQ=255)
aaGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTa < 1:3274848/93‑1 (MQ=255)
aaGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTa > 2:243142/1‑93 (MQ=255)
agagTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTAc > 1:2764545/1‑93 (MQ=255)
agTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTg < 2:1170332/93‑1 (MQ=255)
agTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTg > 2:472870/1‑93 (MQ=255)
agTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTg < 2:2160598/93‑1 (MQ=255)
gTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTga < 2:1358399/93‑1 (MQ=255)
attCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTga < 2:4178880/92‑1 (MQ=255)
tCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTgaga > 2:1714800/1‑93 (MQ=255)
cGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGAt < 1:3363374/93‑1 (MQ=255)
gACGTCCAAACGCAAGCCCTGTTACGGACGCGTGAAAAACTGGCGCTGCGTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATc < 1:1610645/93‑1 (MQ=255)
tCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCaaaa < 2:150349/93‑1 (MQ=255)
aaaCGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAagc < 2:2712406/93‑1 (MQ=255)
aaCGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAagca > 1:316068/1‑93 (MQ=255)
aCGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAagcag < 2:3745157/93‑1 (MQ=255)
gCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGcc > 2:4251741/1‑93 (MQ=255)
gCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGcc > 2:198624/1‑93 (MQ=255)
gCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGcc < 2:693449/93‑1 (MQ=255)
cAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCa < 1:2323720/93‑1 (MQ=255)
cAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCa > 2:1394591/1‑93 (MQ=255)
|
ATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAG > NC_000913/3182938‑3183117
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATC > NC_000913/3182936‑3183120
|
AGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCC > SRR4302535.2552316/1‑94 (MQ=60)
ATGTGGAGAAAAAAATCCGCCAACCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCT < SRR4302535.4490889/94‑1 (MQ=60)
GTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGT < SRR4302535.3007287/94‑1 (MQ=60)
GGGAGAAAAAAACCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTT < SRR4302535.4244568/94‑1 (MQ=60)
AGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACG > SRR4302535.2516202/1‑94 (MQ=60)
AGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACG < SRR4302535.3360117/94‑1 (MQ=60)
GAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGG > SRR4302535.2007912/1‑94 (MQ=60)
GAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGCCCAAACGCAAGCCCTGTTACGG > SRR4302535.1584903/1‑94 (MQ=60)
AAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGAC > SRR4302535.2383460/1‑94 (MQ=60)
AAAAACCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACT < SRR4302535.228511/94‑1 (MQ=60)
AAAATCCGCCAAACCCTACAAGCGCCGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTG > SRR4302535.722858/1‑94 (MQ=60)
AAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTC > SRR4302535.4380418/1‑94 (MQ=60)
ATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTG > SRR4302535.1565000/1‑94 (MQ=60)
ATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTG < SRR4302535.3048370/94‑1 (MQ=60)
CGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAA > SRR4302535.1072763/1‑94 (MQ=60)
GCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAA > SRR4302535.1902865/1‑94 (MQ=60)
CCAACCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAA < SRR4302535.1815080/94‑1 (MQ=60)
AAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACT > SRR4302535.2755224/1‑94 (MQ=60)
AACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTG > SRR4302535.4105116/1‑94 (MQ=60)
AACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTG > SRR4302535.1241655/1‑94 (MQ=60)
CCCAACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGC < SRR4302535.56584/94‑1 (MQ=60)
CCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCG > SRR4302535.4550143/1‑94 (MQ=60)
CCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCG > SRR4302535.671972/1‑94 (MQ=60)
CTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGC > SRR4302535.4165818/1‑94 (MQ=60)
TACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCT < SRR4302535.3773788/94‑1 (MQ=60)
ACAAGCCCAGCGGCCGCGCGTCGACCTTGTAAGCCGGGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTG < SRR4302535.822702/94‑1 (MQ=60)
AAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCT < SRR4302535.4259559/94‑1 (MQ=60)
GCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTG < SRR4302535.468869/94‑1 (MQ=60)
GCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTG < SRR4302535.3838581/94‑1 (MQ=60)
GCGCAGCTGACGCGCCTCGACCTTGTAACCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTG < SRR4302535.1130046/94‑1 (MQ=60)
CAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAAC < SRR4302535.2406540/94‑1 (MQ=60)
CAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAAC > SRR4302535.16925/1‑94 (MQ=60)
CGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACA < SRR4302535.4207809/94‑1 (MQ=60)
AGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACA < SRR4302535.2217579/94‑1 (MQ=60)
AGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACA < SRR4302535.1621118/94‑1 (MQ=60)
AGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACA < SRR4302535.2642013/94‑1 (MQ=60)
CTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAA > SRR4302535.1024644/1‑94 (MQ=60)
CGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCA < SRR4302535.3988821/94‑1 (MQ=60)
CGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCA < SRR4302535.2073419/94‑1 (MQ=60)
GCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAGAACTGGCGCTGCTTGAACAAAGAATCAG < SRR4302535.1840527/94‑1 (MQ=60)
GCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAG > SRR4302535.3170606/1‑94 (MQ=60)
GCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAG < SRR4302535.1567692/94‑1 (MQ=60)
CCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGC < SRR4302535.3967687/94‑1 (MQ=60)
CCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGC > SRR4302535.1732261/1‑94 (MQ=60)
CTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCG > SRR4302535.4399629/1‑94 (MQ=60)
TCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGA < SRR4302535.4489157/94‑1 (MQ=60)
TCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGA < SRR4302535.1256882/94‑1 (MQ=60)
ACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACT < SRR4302535.1813987/94‑1 (MQ=60)
ACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACT > SRR4302535.2931654/1‑94 (MQ=60)
TGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAA > SRR4302535.1409449/1‑94 (MQ=60)
GTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAA > SRR4302535.4587532/1‑94 (MQ=60)
TAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAA < SRR4302535.104909/94‑1 (MQ=60)
AAGCCGGTAAGAGTTCGACGGCCAAACCGAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAAT < SRR4302535.1528601/94‑1 (MQ=60)
AGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATC > SRR4302535.525407/1‑94 (MQ=60)
GCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCG < SRR4302535.36637/94‑1 (MQ=60)
GTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAG < SRR4302535.2628474/94‑1 (MQ=60)
TGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGT > SRR4302535.1263562/1‑94 (MQ=60)
TGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGT > SRR4302535.3893568/1‑94 (MQ=60)
GAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTA < SRR4302535.19038/94‑1 (MQ=60)
GAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTA > SRR4302535.3700866/1‑94 (MQ=60)
GAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTA > SRR4302535.3141857/1‑94 (MQ=60)
AAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTAC > SRR4302535.2784237/1‑94 (MQ=60)
AAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTAC < SRR4302535.3297593/94‑1 (MQ=60)
CGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATC < SRR4302535.3386777/94‑1 (MQ=60)
GACGTCCAAACGCAAGCCCTGTTACGGACGCGTGAAAAACTGGCGCTGCGTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCA < SRR4302535.1622255/94‑1 (MQ=60)
AAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCA > SRR4302535.318262/1‑94 (MQ=60)
CGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGACTCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCC < SRR4302535.2531096/94‑1 (MQ=60)
CAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAG < SRR4302535.2340347/94‑1 (MQ=60)
AGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGAT < SRR4302535.3969805/94‑1 (MQ=60)
AGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGAT < SRR4302535.502540/94‑1 (MQ=60)
AGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGAT < SRR4302535.2652815/94‑1 (MQ=60)
AGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGAT > SRR4302535.17698/1‑94 (MQ=60)
GCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATC < SRR4302535.2081347/94‑1 (MQ=60)
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AGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATC > NC_000913/3182936‑3183120
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
