Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,183,028 |
T→C |
V70A (GTC→GCC) |
b3042 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,183,028 | 0 | T | C | 99.3%
| 840.2
/ ‑3.3
| 272 | V70A (GTC→GCC) | b3042 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (116/154); total (117/155) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.70e-01 |
Only 100 of 287 total aligned reads displayed.
ATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAG > NC_000913/3182938‑3183117
|
tgtgGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCt > 2:4688661/1‑93 (MQ=255)
tgtgGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCt < 2:7648638/93‑1 (MQ=255)
gtgGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTg > 2:2703272/1‑93 (MQ=255)
ggggAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTg < 1:6300082/91‑1 (MQ=255)
gagaAAAAAATCCGCCAAGCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTa < 1:5022242/93‑1 (MQ=255)
gagaAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTa < 2:3673316/93‑1 (MQ=255)
agaAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTAc < 1:6830254/93‑1 (MQ=255)
agaAAAAAACCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTAc < 1:1764531/93‑1 (MQ=255)
gaAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACg > 2:4249784/1‑93 (MQ=255)
gaAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACg < 2:7799692/93‑1 (MQ=255)
aaaaaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACgg < 1:1170173/93‑1 (MQ=255)
aaaaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGa < 2:5190968/93‑1 (MQ=255)
aaaaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGa > 1:7890181/1‑93 (MQ=255)
aaaaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGa > 1:4731195/1‑93 (MQ=255)
aaaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGAc > 1:6000009/1‑93 (MQ=255)
aaaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGAc > 1:3130281/1‑93 (MQ=255)
aaaaTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACt > 2:2765762/1‑93 (MQ=255)
aTCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGt > 2:1848777/1‑93 (MQ=255)
cccGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTg < 2:6134911/92‑1 (MQ=255)
ccGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGa < 2:3356989/93‑1 (MQ=255)
ccGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGa > 1:9073/1‑93 (MQ=255)
cGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGaa < 2:7338421/93‑1 (MQ=255)
cGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGaa < 2:6797042/93‑1 (MQ=255)
ccAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGaaaa > 2:1192090/1‑93 (MQ=255)
cAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGaaaaa < 1:734526/93‑1 (MQ=255)
cAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGaaaaa < 2:6480130/93‑1 (MQ=255)
cAAACCCGACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGaaaaa < 2:167743/93‑1 (MQ=255)
aaaCCCTACAGGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAAc < 1:2913649/93‑1 (MQ=255)
aaaCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAAc < 1:1071267/93‑1 (MQ=255)
aCCCTACAAGCGCAGCTGACGTACCTCGACCTTGCAAGCCGTGAAGAGTTCGACGTCCACACGCAAGCCCTGTTACGCACTCGTGAAAAACTg > 2:951032/1‑93 (MQ=255)
aCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTg > 1:2495387/1‑93 (MQ=255)
cccTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTgg > 1:4247960/1‑93 (MQ=255)
cccTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTgg < 2:6611511/93‑1 (MQ=255)
ccTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGgc > 1:4983862/1‑93 (MQ=255)
ccTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGgc > 2:488702/1‑93 (MQ=255)
cTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCGTGTTACGGACTCGTGAAAAACTGgcg > 1:2601987/1‑93 (MQ=255)
cTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGgcg > 2:56325/1‑93 (MQ=255)
tACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGgcgc > 1:744249/1‑93 (MQ=255)
caCAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGgcgc < 2:5806199/92‑1 (MQ=255)
aaCAAGCGCAGCGGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGgcgc < 1:1585324/92‑1 (MQ=255)
cgcAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTg < 1:2755681/93‑1 (MQ=255)
cgcAGCGGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTg < 2:507839/93‑1 (MQ=255)
gcAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGa > 1:4927164/1‑93 (MQ=255)
aGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAAc < 2:7231168/93‑1 (MQ=255)
aGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAAc < 2:4992519/93‑1 (MQ=255)
gCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACa < 1:3816965/93‑1 (MQ=255)
cTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACaa < 2:474503/93‑1 (MQ=255)
gACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAg < 1:1267693/93‑1 (MQ=255)
aCGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGa < 2:687938/93‑1 (MQ=255)
cgcgCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGaa < 2:2336858/93‑1 (MQ=255)
cgcgCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGaa < 1:1671607/93‑1 (MQ=255)
gcgcCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAAt < 1:7668573/93‑1 (MQ=255)
gccccTCGACCTTGTAAGCCGTAAAGACTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAAt < 1:6408949/90‑1 (MQ=255)
cgcCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATc < 2:4500246/93‑1 (MQ=255)
cTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGc < 1:2434849/93‑1 (MQ=255)
tCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCg > 2:3511283/1‑93 (MQ=255)
cGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGa > 1:5728604/1‑93 (MQ=255)
aCCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAAc > 1:2810566/1‑93 (MQ=255)
ccTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACt > 1:1846919/1‑93 (MQ=255)
ccTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACt > 1:7297633/1‑93 (MQ=255)
ccTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACt > 2:7470591/1‑93 (MQ=255)
ccTTGTAAGCCGGGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACt < 1:1474055/93‑1 (MQ=255)
cTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTg > 1:6779321/1‑93 (MQ=255)
cTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTg > 2:6054038/1‑93 (MQ=255)
tGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGa > 1:2191549/1‑93 (MQ=255)
aaaGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaaa > 2:5864633/2‑93 (MQ=255)
aaGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaaaa > 2:1313618/1‑93 (MQ=255)
aaGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGaaaa < 1:2258784/93‑1 (MQ=255)
aGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAAt > 2:7077025/1‑93 (MQ=255)
aGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAAt < 2:4453555/93‑1 (MQ=255)
gTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa < 1:3631290/93‑1 (MQ=255)
gTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa < 1:4096493/93‑1 (MQ=255)
gTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa < 2:6642632/93‑1 (MQ=255)
gTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa < 1:7158977/93‑1 (MQ=255)
gTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa < 2:3916515/93‑1 (MQ=255)
gTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCa < 2:388209/93‑1 (MQ=255)
gAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGt < 1:4019237/93‑1 (MQ=255)
gAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGt < 1:5562612/93‑1 (MQ=255)
agagTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTAc > 1:6526685/1‑93 (MQ=255)
gTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTga < 2:4650618/93‑1 (MQ=255)
ttCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTgag < 2:280383/93‑1 (MQ=255)
ttCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTgag < 2:598903/93‑1 (MQ=255)
ttCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTgag < 1:458615/93‑1 (MQ=255)
cGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGAt < 1:7775844/93‑1 (MQ=255)
cGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCaa < 1:4139710/93‑1 (MQ=255)
tCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCaaaa > 2:3061751/1‑93 (MQ=255)
tCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCaaaa > 1:307018/1‑93 (MQ=255)
ccAAACGCAAGCCGTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCaaaaa < 2:2868882/93‑1 (MQ=255)
ccAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCaaaaa < 2:3157668/93‑1 (MQ=255)
ccAAACGCAAGCCCTGTGACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCaaaaa < 2:893647/93‑1 (MQ=255)
cAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAag > 1:6153167/1‑93 (MQ=255)
cAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAag > 2:1991550/1‑93 (MQ=255)
aaCGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAagca < 2:4035505/93‑1 (MQ=255)
aaCCCAAGCACTGTTACGGAATCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAagca < 1:2092922/93‑1 (MQ=255)
aCGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAagcag < 1:1102693/93‑1 (MQ=255)
aCGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAagcag < 1:7015644/93‑1 (MQ=255)
aCGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTCAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAagcag > 2:5691630/1‑93 (MQ=255)
cAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAACAAGCAGCCa > 2:439319/1‑93 (MQ=255)
cAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCa > 2:5336167/1‑93 (MQ=255)
cAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCa < 2:2549320/93‑1 (MQ=255)
|
ATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAG > NC_000913/3182938‑3183117
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCC > NC_000913/3182935‑3183121
|
AAGATGTGGAGAAAAAAATCCGCCAACCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGC < SRR4302543.5351225/94‑1 (MQ=60)
AAGATGTGGAGAAAAAAATCCGCCAACCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGC < SRR4302543.1309161/94‑1 (MQ=60)
AAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGC < SRR4302543.569328/94‑1 (MQ=60)
agatgtggggaaaaaagaactccaagtcctaacAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGATTTCGACGTCCAAACGCAAGCC < SRR4302543.2339393/61‑1 (MQ=60)
AGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCC > SRR4302543.6722923/1‑94 (MQ=60)
AGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCC < SRR4302543.2339392/94‑1 (MQ=60)
GATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCC < SRR4302543.6945725/94‑1 (MQ=60)
GATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCC > SRR4302543.6243068/1‑94 (MQ=60)
ATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGGCGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCT < SRR4302543.2485699/94‑1 (MQ=60)
ATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCT > SRR4302543.4066524/1‑94 (MQ=60)
ATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCT < SRR4302543.6403115/94‑1 (MQ=60)
ATGTGAAAAAAAAAACCCGCAAACCCCAACAAGCGCAGCGGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCT < SRR4302543.2934475/94‑1 (MQ=60)
GGGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGT < SRR4302543.6359370/94‑1 (MQ=60)
gggaaAAAAAAACCCGCCAACCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTT < SRR4302543.187804/89‑1 (MQ=60)
GGAGAAAAAAATCCGCAAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTA < SRR4302543.6509990/94‑1 (MQ=60)
aaaaaaaaacccccccaaccccaacaggcgcagcggcCGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTAC < SRR4302543.5646104/57‑1 (MQ=60)
GAGAAAAAAATCCGCCAAGCCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTAC < SRR4302543.5067946/94‑1 (MQ=60)
AGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACG < SRR4302543.6894738/94‑1 (MQ=60)
AGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACG < SRR4302543.2363417/94‑1 (MQ=60)
AGAAAAAAACCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACG < SRR4302543.1780306/94‑1 (MQ=60)
AGAAAAAAACCCGCAAAACCCTACAAGCGCAGCTGCCGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAATCCCTGTTACG < SRR4302543.7005581/94‑1 (MQ=60)
GAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGG > SRR4302543.4181976/1‑94 (MQ=60)
AAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGA > SRR4302543.7964389/1‑94 (MQ=60)
AAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGA > SRR4302543.4774418/1‑94 (MQ=60)
AAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGA < SRR4302543.1180799/94‑1 (MQ=60)
AAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAACCGCAAGCCCTGTTACGGAC > SRR4302543.6055119/1‑94 (MQ=60)
AAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGAC > SRR4302543.6055120/1‑94 (MQ=60)
AAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGAC > SRR4302543.3158436/1‑94 (MQ=60)
AAAAAACCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGAC < SRR4302543.5855615/94‑1 (MQ=60)
AAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACT > SRR4302543.7464646/1‑94 (MQ=60)
AAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACT > SRR4302543.3970547/1‑94 (MQ=60)
AAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCG > SRR4302543.3698678/1‑94 (MQ=60)
TCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGA > SRR4302543.9156/1‑94 (MQ=60)
GCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAA > SRR4302543.6279088/1‑94 (MQ=60)
CCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAA > SRR4302543.6638648/1‑94 (MQ=60)
CAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAAC < SRR4302543.741104/94‑1 (MQ=60)
AAACCCTACAGGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACT < SRR4302543.2940123/94‑1 (MQ=60)
AAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACT < SRR4302543.1080897/94‑1 (MQ=60)
ACCCCTACAAGCGCGGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTG < SRR4302543.3019433/94‑1 (MQ=60)
AACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTG > SRR4302543.2518022/1‑94 (MQ=60)
ACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGG < SRR4302543.6572883/94‑1 (MQ=60)
ACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGG > SRR4302543.4286510/1‑94 (MQ=60)
CCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGC < SRR4302543.7723864/94‑1 (MQ=60)
CCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGC < SRR4302543.5762817/94‑1 (MQ=60)
CCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGC > SRR4302543.5029226/1‑94 (MQ=60)
CCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGC < SRR4302543.224525/94‑1 (MQ=60)
CCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCGTGTTACGGACTCGTGAAAAACTGGCG > SRR4302543.2625618/1‑94 (MQ=60)
CCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCG > SRR4302543.1441773/1‑94 (MQ=60)
CCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCG < SRR4302543.6075760/94‑1 (MQ=60)
CCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCG > SRR4302543.3145606/1‑94 (MQ=60)
CTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGC < SRR4302543.1856580/94‑1 (MQ=60)
CTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGC > SRR4302543.750872/1‑94 (MQ=60)
CTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGC > SRR4302543.6861528/1‑94 (MQ=60)
AACAAGCGCAGCGGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCT < SRR4302543.1599477/94‑1 (MQ=60)
ACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTG > SRR4302543.2637726/1‑94 (MQ=60)
CAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGC > SRR4302543.709987/1‑94 (MQ=60)
AGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTT < SRR4302543.7406867/94‑1 (MQ=60)
AGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTT < SRR4302543.2125451/94‑1 (MQ=60)
GCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTG > SRR4302543.7308565/1‑94 (MQ=60)
CGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGA > SRR4302543.4972046/1‑94 (MQ=60)
CGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGA < SRR4302543.2780751/94‑1 (MQ=60)
AGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACA > SRR4302543.504868/1‑94 (MQ=60)
AGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACA > SRR4302543.7222274/1‑94 (MQ=60)
GCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAA < SRR4302543.3850618/94‑1 (MQ=60)
GCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAA < SRR4302543.3850619/94‑1 (MQ=60)
CTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAA > SRR4302543.778744/1‑94 (MQ=60)
CTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAA > SRR4302543.4148123/1‑94 (MQ=60)
TGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAG < SRR4302543.7822590/94‑1 (MQ=60)
TGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAG < SRR4302543.2565117/94‑1 (MQ=60)
GACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGA < SRR4302543.7076480/94‑1 (MQ=60)
GACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGA < SRR4302543.1279032/94‑1 (MQ=60)
ACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAA < SRR4302543.1265163/94‑1 (MQ=60)
CGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAAT < SRR4302543.1648109/94‑1 (MQ=60)
CGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAAT < SRR4302543.1686590/94‑1 (MQ=60)
CGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAAT > SRR4302543.5051367/1‑94 (MQ=60)
CGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAAT < SRR4302543.3126527/94‑1 (MQ=60)
CGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAAT < SRR4302543.911197/94‑1 (MQ=60)
GCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATC < SRR4302543.7741245/94‑1 (MQ=60)
GCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATC < SRR4302543.7741246/94‑1 (MQ=60)
GCCCCTCGACCTTGTAAGCCGTAAAGACTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATC < SRR4302543.6469306/94‑1 (MQ=60)
CGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCA < SRR4302543.6809882/94‑1 (MQ=60)
GCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAG < SRR4302543.2595310/94‑1 (MQ=60)
CCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGC < SRR4302543.1741140/94‑1 (MQ=60)
CTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCG < SRR4302543.2456818/94‑1 (MQ=60)
CTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCG > SRR4302543.7400478/1‑94 (MQ=60)
CTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCG < SRR4302543.2456817/94‑1 (MQ=60)
CTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCA > SRR4302543.2493452/1‑94 (MQ=60)
TCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGA > SRR4302543.5780875/1‑94 (MQ=60)
CGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAA > SRR4302543.4534215/1‑94 (MQ=60)
GACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAAC > SRR4302543.2836295/1‑94 (MQ=60)
ACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACT > SRR4302543.7368037/1‑94 (MQ=60)
ACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACT < SRR4302543.3176918/94‑1 (MQ=60)
ACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACT > SRR4302543.1863532/1‑94 (MQ=60)
CCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTG > SRR4302543.1738729/1‑94 (MQ=60)
CCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTG > SRR4302543.6843344/1‑94 (MQ=60)
CCTTGTAAGCCGGGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTG < SRR4302543.1487333/94‑1 (MQ=60)
CTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGG > SRR4302543.6394779/1‑94 (MQ=60)
CTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGG < SRR4302543.2974510/94‑1 (MQ=60)
TTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGA > SRR4302543.2211234/1‑94 (MQ=60)
AAGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAAT < SRR4302543.2279361/94‑1 (MQ=60)
AGCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATC < SRR4302543.1185743/94‑1 (MQ=60)
GCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCG < SRR4302543.2039152/94‑1 (MQ=60)
GCCGTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCG < SRR4302543.1550865/94‑1 (MQ=60)
GTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAG < SRR4302543.3663260/94‑1 (MQ=60)
GTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAG > SRR4302543.1556108/1‑94 (MQ=60)
GTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAG < SRR4302543.4133271/94‑1 (MQ=60)
GTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAG < SRR4302543.7228543/94‑1 (MQ=60)
GTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAG < SRR4302543.3663261/94‑1 (MQ=60)
CTGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAG < SRR4302543.5441593/94‑1 (MQ=60)
TGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGT < SRR4302543.4079639/94‑1 (MQ=60)
TGAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGT > SRR4302543.6194087/1‑94 (MQ=60)
GAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTA > SRR4302543.2853323/1‑94 (MQ=60)
GAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTA < SRR4302543.5613204/94‑1 (MQ=60)
GAAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTA < SRR4302543.4055131/94‑1 (MQ=60)
AAGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTAC > SRR4302543.6588140/1‑94 (MQ=60)
AGAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACT > SRR4302543.2157728/1‑94 (MQ=60)
GAGTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTG > SRR4302543.1142809/1‑94 (MQ=60)
GTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAG < SRR4302543.4238535/94‑1 (MQ=60)
GTTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAG < SRR4302543.5027288/94‑1 (MQ=60)
TTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGA < SRR4302543.462872/94‑1 (MQ=60)
TTCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGA > SRR4302543.2638922/1‑94 (MQ=60)
TCGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGAT > SRR4302543.7880340/1‑94 (MQ=60)
CGACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATC < SRR4302543.7849179/94‑1 (MQ=60)
ACGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAA < SRR4302543.430746/94‑1 (MQ=60)
CGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAA > SRR4302543.5017001/1‑94 (MQ=60)
CGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAA > SRR4302543.1476392/1‑94 (MQ=60)
CGTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAA < SRR4302543.4177087/94‑1 (MQ=60)
GTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAA > SRR4302543.4966407/1‑94 (MQ=60)
GTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAA < SRR4302543.7328648/94‑1 (MQ=60)
GTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAA > SRR4302543.1613502/1‑94 (MQ=60)
GTCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAA > SRR4302543.309787/1‑94 (MQ=60)
TCCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAA < SRR4302543.7466813/94‑1 (MQ=60)
CCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAG > SRR4302543.7997350/1‑94 (MQ=60)
CCAAACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAG > SRR4302543.6211417/1‑94 (MQ=60)
AACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAG > SRR4302543.4867618/1‑94 (MQ=60)
ACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGC < SRR4302543.1112633/94‑1 (MQ=60)
ACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGC < SRR4302543.1112632/94‑1 (MQ=60)
ACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGC < SRR4302543.2789836/94‑1 (MQ=60)
ACGCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGC < SRR4302543.7082656/94‑1 (MQ=60)
GCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCA > SRR4302543.4697854/1‑94 (MQ=60)
GCAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCA > SRR4302543.4697855/1‑94 (MQ=60)
CAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAG < SRR4302543.2222365/94‑1 (MQ=60)
CAAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAG < SRR4302543.1095745/94‑1 (MQ=60)
AAGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGA > SRR4302543.3590499/1‑94 (MQ=60)
AGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGAT < SRR4302543.5094384/94‑1 (MQ=60)
AGCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGAT > SRR4302543.2920776/1‑94 (MQ=60)
GCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATC < SRR4302543.6860252/94‑1 (MQ=60)
GCCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATC < SRR4302543.637260/94‑1 (MQ=60)
GCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCC < SRR4302543.6500569/94‑1 (MQ=60)
CCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCC < SRR4302543.3992869/94‑1 (MQ=60)
CCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCC > SRR4302543.7031359/1‑94 (MQ=60)
CCCTGGTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCC < SRR4302543.1971409/94‑1 (MQ=60)
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AAGATGTGGAGAAAAAAATCCGCCAAACCCTACAAGCGCAGCTGACGCGCCTCGACCTTGTAAGCCGTGAAGAGTTCGACGTCCAAACGCAAGTCCTGTTACGGACTCGTGAAAAACTGGCGCTGCTTGAACAAAGAATCAGCGAACTGGAAAATCGCAGTACTGAGATCAAAAAGCAGCCAGATCC > NC_000913/3182935‑3183121
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
