Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,186,266	T→C	V284A (GTC→GCC)	yqiG →	putative membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,186,266	0	T	C	100.0%	669.1 / NA	208	V284A (GTC→GCC)	yqiG	putative membrane protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (90/118); total (90/118)

Only 100 of 220 total aligned reads displayed.

TGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAAC  >  NC_000913/3186176‑3186355

tGAAAAGCGATGAGAATATGTTACCTCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGcct                                                                                         <  2:733902/93‑1 (MQ=255)

tGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGcct                                                                                         <  1:4172839/93‑1 (MQ=255)

  acaaGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTca                                                                                       >  1:4531392/3‑93 (MQ=255)

  aaaaGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGcctcc                                                                                       >  2:1771044/1‑92 (MQ=255)

     aGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAg                                                                                    >  2:2668439/1‑93 (MQ=255)

        gATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaac                                                                                 <  1:875337/93‑1 (MQ=255)

          tGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaacaa                                                                               >  2:1048690/1‑93 (MQ=255)

          tGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaacaa                                                                               >  1:4314438/1‑93 (MQ=255)

          tGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaacaa                                                                               <  2:2911129/93‑1 (MQ=255)

           gagaATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaacaac                                                                              <  2:2168667/93‑1 (MQ=255)

           gagaATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaacaac                                                                              <  2:1213281/93‑1 (MQ=255)

           gagaATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGaacaac                                                                              <  1:412886/93‑1 (MQ=255)

            agaATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAAcc                                                                             >  2:2226588/1‑93 (MQ=255)

             gaATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCg                                                                            >  1:2001001/1‑93 (MQ=255)

              aaTATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGt                                                                           >  2:456013/1‑93 (MQ=255)

               atatGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGta                                                                          >  1:355327/1‑93 (MQ=255)

               atatGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGta                                                                          >  1:3611622/1‑93 (MQ=255)

               atatGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGta                                                                          <  1:3750275/93‑1 (MQ=255)

               atatGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGta                                                                          <  2:3209875/93‑1 (MQ=255)

               atatGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGta                                                                          >  1:246623/1‑93 (MQ=255)

                tatGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtat                                                                         >  2:3068869/1‑93 (MQ=255)

                tatGTTACCGCCAGACCTACGTGGTTAAGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtct                                                                         >  1:3167743/1‑91 (MQ=255)

                 atGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtatt                                                                        >  2:4312493/1‑93 (MQ=255)

                 atGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtatt                                                                        >  2:4075901/1‑93 (MQ=255)

                  tGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtatta                                                                       >  2:3516776/1‑93 (MQ=255)

                   gTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGtattat                                                                      <  2:124301/93‑1 (MQ=255)

                    ttACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTattatt                                                                     >  1:4325285/1‑93 (MQ=255)

                      aCCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTAttattta                                                                   <  2:3032220/93‑1 (MQ=255)

                      aCCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTAttattta                                                                   >  2:244520/1‑93 (MQ=255)

                       ccGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTAttatttat                                                                  >  1:1298786/1‑93 (MQ=255)

                        cGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAGCGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATc                                                                 <  1:3789947/93‑1 (MQ=255)

                        cGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATc                                                                 <  2:2735562/93‑1 (MQ=255)

                        cGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATc                                                                 <  2:1191648/93‑1 (MQ=255)

                        cGCCAGACCTACGTGGTGACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATc                                                                 <  2:3317140/93‑1 (MQ=255)

                         gCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCa                                                                >  1:3715976/1‑93 (MQ=255)

                         cccAGACCTACGTGGTAACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGTTCACTGCCTCACAGAACAACCGTATTATTTATCa                                                                <  2:4359284/92‑1 (MQ=255)

                          ccAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCaa                                                               >  1:2723351/1‑93 (MQ=255)

                          ccAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCaa                                                               >  2:2032786/1‑93 (MQ=255)

                            aGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGa                                                             >  1:3125254/1‑93 (MQ=255)

                            aGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGa                                                             <  2:3627240/93‑1 (MQ=255)

                            aGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGa                                                             <  2:4020838/93‑1 (MQ=255)

                            aGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGa                                                             >  1:1225484/1‑93 (MQ=255)

                             gACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGaa                                                            <  1:1879324/93‑1 (MQ=255)

                             gACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGaa                                                            >  1:344519/1‑93 (MQ=255)

                               ccgaCGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGaaaa                                                          <  1:2159434/90‑1 (MQ=255)

                               ccTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGaaaa                                                          >  1:3307599/1‑93 (MQ=255)

                               ccTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGaaaa                                                          <  1:806193/93‑1 (MQ=255)

                                cTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAAt                                                         <  1:4243760/93‑1 (MQ=255)

                                cTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAAt                                                         <  2:3581689/93‑1 (MQ=255)

                                 tACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATg                                                        >  2:1473026/1‑93 (MQ=255)

                                 tACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATg                                                        >  1:4337119/1‑93 (MQ=255)

                                  aCGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGt                                                       <  2:3915859/93‑1 (MQ=255)

                                   cGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGtt                                                      <  1:4466833/93‑1 (MQ=255)

                                    gTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTtc                                                     <  1:1179148/93‑1 (MQ=255)

                                     tGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTtcc                                                    <  1:2284662/93‑1 (MQ=255)

                                     tGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTtcc                                                    <  1:3264213/93‑1 (MQ=255)

                                       gTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTtcctc                                                  >  2:3860763/1‑93 (MQ=255)

                                         tACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCa                                                <  1:4457868/93‑1 (MQ=255)

                                            gCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGc                                             >  1:4359634/1‑93 (MQ=255)

                                              aCCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGccc                                           >  1:1823658/1‑93 (MQ=255)

                                              aCCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGccc                                           >  2:2332629/1‑93 (MQ=255)

                                               ccGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCa                                          <  1:2241655/93‑1 (MQ=255)

                                                  cAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCAttt                                       <  2:4024373/93‑1 (MQ=255)

                                                    aaTCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGc                                     >  1:309024/1‑93 (MQ=255)

                                                      tCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTa                                   <  2:560990/93‑1 (MQ=255)

                                                         cGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTa                                >  1:2426766/1‑93 (MQ=255)

                                                          gggTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTAc                               <  1:276060/93‑1 (MQ=255)

                                                            gtgtCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCa                             <  1:1055094/93‑1 (MQ=255)

                                                                cGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAAttt                         <  1:4108881/93‑1 (MQ=255)

                                                                 gCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTa                        >  2:256789/1‑93 (MQ=255)

                                                                 gCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTa                        <  2:1642419/93‑1 (MQ=255)

                                                                  cacaAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTAt                       <  2:3255994/93‑1 (MQ=255)

                                                                    caAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTc                     >  1:4290716/1‑93 (MQ=255)

                                                                    caAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTc                     <  1:352107/93‑1 (MQ=255)

                                                                     aaaCGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCa                    <  2:4452973/93‑1 (MQ=255)

                                                                     aaaCGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCa                    <  2:753536/93‑1 (MQ=255)

                                                                       aCGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAAt                  <  1:1580574/93‑1 (MQ=255)

                                                                       aCGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAAt                  <  2:577630/93‑1 (MQ=255)

                                                                        cGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATa                 <  2:1853602/93‑1 (MQ=255)

                                                                        cGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATa                 <  1:548008/93‑1 (MQ=255)

                                                                        cGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATa                 <  1:859138/93‑1 (MQ=255)

                                                                         gANTGCAAAGGTCACTGCCTCNNAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATAc                <  1:1990295/93‑1 (MQ=255)

                                                                          aaTGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACa               <  1:2272713/93‑1 (MQ=255)

                                                                          aaTGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACa               <  2:847280/93‑1 (MQ=255)

                                                                            tGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACAtt             >  1:3970775/1‑93 (MQ=255)

                                                                             gCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTa            <  2:517077/93‑1 (MQ=255)

                                                                              cAAAGGTCACTGCCTCACAGAACATCCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTAc           <  2:2894985/93‑1 (MQ=255)

                                                                              cAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTAc           <  1:4577565/93‑1 (MQ=255)

                                                                               caaGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACa          <  1:2848691/92‑1 (MQ=255)

                                                                               aaaGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACa          >  1:3390360/1‑93 (MQ=255)

                                                                                aaGTTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAg         <  2:2372947/93‑1 (MQ=255)

                                                                                aaGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAg         >  2:1391975/1‑93 (MQ=255)

                                                                                 aGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAgg        <  2:3435032/93‑1 (MQ=255)

                                                                                 aGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAgg        <  2:3078004/93‑1 (MQ=255)

                                                                                 aGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAgg        >  2:1088006/1‑93 (MQ=255)

                                                                                  ggTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAggg       <  1:1217470/93‑1 (MQ=255)

                                                                                    tCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGc     >  1:2325670/1‑93 (MQ=255)

                                                                                      aCTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCaa   >  1:4501481/1‑93 (MQ=255)

                                                                                       cTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAAc  >  1:3475059/1‑93 (MQ=255)

                                                                                       cTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAAc  <  2:1896983/93‑1 (MQ=255)

TGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAAC  >  NC_000913/3186176‑3186355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTTGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAACTTGA  >  NC_000913/3186173‑3186359

CGTTGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGC                                                                                               >  SRR4302535.4353345/1‑94 (MQ=60)

   TGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTC                                                                                            >  SRR4302535.3330201/1‑94 (MQ=60)

   TGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTC                                                                                            >  SRR4302535.2423094/1‑94 (MQ=60)

   TGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTC                                                                                            <  SRR4302535.4201399/94‑1 (MQ=60)

   TGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTC                                                                                            <  SRR4302535.4324819/94‑1 (MQ=60)

    GACAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCA                                                                                           >  SRR4302535.4562408/1‑94 (MQ=60)

       AAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAG                                                                                        <  SRR4302535.2025314/94‑1 (MQ=60)

        AGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGA                                                                                       >  SRR4302535.4002951/1‑94 (MQ=60)

         GCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAA                                                                                      >  SRR4302535.2995808/1‑94 (MQ=60)

          CGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAAC                                                                                     <  SRR4302535.1227008/94‑1 (MQ=60)

           GATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACA                                                                                    <  SRR4302535.881539/94‑1 (MQ=60)

           GATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACA                                                                                    >  SRR4302535.2299889/1‑94 (MQ=60)

            ATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAA                                                                                   >  SRR4302535.4343952/1‑94 (MQ=60)

              GAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACC                                                                                 <  SRR4302535.415787/94‑1 (MQ=60)

               AGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCG                                                                                >  SRR4302535.2015418/1‑94 (MQ=60)

                 AATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTA                                                                              >  SRR4302535.3636667/1‑94 (MQ=60)

                 AATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTA                                                                              >  SRR4302535.357778/1‑94 (MQ=60)

                 AATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTA                                                                              >  SRR4302535.248314/1‑94 (MQ=60)

                  ATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTAT                                                                             <  SRR4302535.3776240/94‑1 (MQ=60)

                  ATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTAT                                                                             <  SRR4302535.1312710/94‑1 (MQ=60)

                  ATATGTTACCGCCAGACCTACGTGGTTAAGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTCT                                                                             >  SRR4302535.3189689/1‑94 (MQ=60)

                   AATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATT                                                                            <  SRR4302535.652207/94‑1 (MQ=60)

                    ATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTA                                                                           <  SRR4302535.1192507/94‑1 (MQ=60)

                    ATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTA                                                                           <  SRR4302535.3618891/94‑1 (MQ=60)

                    ATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTA                                                                           <  SRR4302535.3196322/94‑1 (MQ=60)

                    ATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTA                                                                           >  SRR4302535.454773/1‑94 (MQ=60)

                     TGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTAT                                                                          <  SRR4302535.4264163/94‑1 (MQ=60)

                     TGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATCAT                                                                          <  SRR4302535.2321782/94‑1 (MQ=60)

                      GTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATT                                                                         >  SRR4302535.4354865/1‑94 (MQ=60)

                      GTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATT                                                                         <  SRR4302535.1679084/94‑1 (MQ=60)

                       atgCCGCCAGACCTGCGTGGTTACGCCCCGCAAGTCCCGGGTGTCGCACAAACGAATGCAAAGGTGACTGCCTCACAGAACAACCGTATTATTT                                                                        <  SRR4302535.2009471/91‑1 (MQ=60)

                       TTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTT                                                                        >  SRR4302535.226938/1‑94 (MQ=60)

                       TTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTT                                                                        >  SRR4302535.3827966/1‑94 (MQ=60)

                        TACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTA                                                                       <  SRR4302535.3144829/94‑1 (MQ=60)

                        TACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTA                                                                       <  SRR4302535.4184311/94‑1 (MQ=60)

                        TACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTA                                                                       <  SRR4302535.1912464/94‑1 (MQ=60)

                         ACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTAT                                                                      >  SRR4302535.1308047/1‑94 (MQ=60)

                         ACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTAT                                                                      >  SRR4302535.2585049/1‑94 (MQ=60)

                           CGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAGCGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCA                                                                    <  SRR4302535.3816084/94‑1 (MQ=60)

                           CGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCA                                                                    >  SRR4302535.3741719/1‑94 (MQ=60)

                           CGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGGGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCA                                                                    >  SRR4302535.3500663/1‑94 (MQ=60)

                            GCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAA                                                                   >  SRR4302535.2742805/1‑94 (MQ=60)

                             CCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAG                                                                  <  SRR4302535.4331083/94‑1 (MQ=60)

                              CAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGA                                                                 >  SRR4302535.1234250/1‑94 (MQ=60)

                              CAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGA                                                                 >  SRR4302535.3147021/1‑94 (MQ=60)

                               AGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAA                                                                <  SRR4302535.4130119/94‑1 (MQ=60)

                               AGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAA                                                                >  SRR4302535.346896/1‑94 (MQ=60)

                                GACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAA                                                               <  SRR4302535.1133346/94‑1 (MQ=60)

                                GACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAA                                                               >  SRR4302535.878877/1‑94 (MQ=60)

                                GACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAA                                                               <  SRR4302535.1892864/94‑1 (MQ=60)

                                 ACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAA                                                              <  SRR4302535.4492613/94‑1 (MQ=60)

                                 ACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAA                                                              >  SRR4302535.3330615/1‑94 (MQ=60)

                                  CCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAAT                                                             <  SRR4302535.2773731/94‑1 (MQ=60)

                                  CCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAAT                                                             <  SRR4302535.811849/94‑1 (MQ=60)

                                  CCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAAT                                                             <  SRR4302535.81205/94‑1 (MQ=60)

                                  CCGACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAAT                                                             <  SRR4302535.2174945/94‑1 (MQ=60)

                                   CTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATG                                                            <  SRR4302535.4272806/94‑1 (MQ=60)

                                   CTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATG                                                            >  SRR4302535.4366782/1‑94 (MQ=60)

                                   CTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATG                                                            >  SRR4302535.3701091/1‑94 (MQ=60)

                                    TACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGT                                                           <  SRR4302535.4583975/94‑1 (MQ=60)

                                      CGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTC                                                         >  SRR4302535.2352775/1‑94 (MQ=60)

                                      CGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTC                                                         <  SRR4302535.4497480/94‑1 (MQ=60)

                                       GTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCC                                                        <  SRR4302535.1187561/94‑1 (MQ=60)

                                        TGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCT                                                       <  SRR4302535.3400777/94‑1 (MQ=60)

                                        TGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCT                                                       <  SRR4302535.3286883/94‑1 (MQ=60)

                                        TGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCT                                                       <  SRR4302535.2300982/94‑1 (MQ=60)

                                            TACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAG                                                   <  SRR4302535.4488442/94‑1 (MQ=60)

                                             ACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGG                                                  <  SRR4302535.360660/94‑1 (MQ=60)

                                              CGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGC                                                 >  SRR4302535.4389475/1‑94 (MQ=60)

                                               GCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCC                                                <  SRR4302535.3483323/94‑1 (MQ=60)

                                                CACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCC                                               >  SRR4302535.1836827/1‑94 (MQ=60)

                                                 ACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCA                                              <  SRR4302535.767219/94‑1 (MQ=60)

                                                  CCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCAT                                             <  SRR4302535.2257603/94‑1 (MQ=60)

                                                   CGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATT                                            >  SRR4302535.337365/1‑94 (MQ=60)

                                                    GCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTT                                           <  SRR4302535.2217182/94‑1 (MQ=60)

                                                     CAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTG                                          <  SRR4302535.3559474/94‑1 (MQ=60)

                                                     CAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTG                                          <  SRR4302535.2845880/94‑1 (MQ=60)

                                                      AAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGC                                         >  SRR4302535.311167/1‑94 (MQ=60)

                                                       AATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCT                                        <  SRR4302535.4528260/94‑1 (MQ=60)

                                                           ACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTA                                    >  SRR4302535.2444253/1‑94 (MQ=60)

                                                           ACGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTA                                    >  SRR4302535.3171857/1‑94 (MQ=60)

                                                            CGGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTAC                                   >  SRR4302535.1453466/1‑94 (MQ=60)

                                                             GGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACC                                  >  SRR4302535.1242216/1‑94 (MQ=60)

                                                             GGGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACC                                  <  SRR4302535.277986/94‑1 (MQ=60)

                                                              GGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCA                                 <  SRR4302535.4451469/94‑1 (MQ=60)

                                                              GGTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCA                                 <  SRR4302535.3440001/94‑1 (MQ=60)

                                                               GTGTCGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAA                                <  SRR4302535.1062596/94‑1 (MQ=60)

                                                                   CGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTA                            <  SRR4302535.4137013/94‑1 (MQ=60)

                                                                   CGCACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTA                            >  SRR4302535.4494348/1‑94 (MQ=60)

                                                                      ACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTC                         >  SRR4302535.4320063/1‑94 (MQ=60)

                                                                      ACAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTC                         <  SRR4302535.2467660/94‑1 (MQ=60)

                                                                       CAAACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCA                        <  SRR4302535.354536/94‑1 (MQ=60)

                                                                          ACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATA                     <  SRR4302535.1591983/94‑1 (MQ=60)

                                                                          ACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATA                     >  SRR4302535.528655/1‑94 (MQ=60)

                                                                          ACGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATA                     >  SRR4302535.4371806/1‑94 (MQ=60)

                                                                           CGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATAC                    <  SRR4302535.865199/94‑1 (MQ=60)

                                                                           CGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATAC                    <  SRR4302535.551835/94‑1 (MQ=60)

                                                                           CGAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATAC                    <  SRR4302535.4360399/94‑1 (MQ=60)

                                                                            GANTGCAAAGGTCACTGCCTCNNAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACA                   <  SRR4302535.2004626/94‑1 (MQ=60)

                                                                            GAATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACA                   >  SRR4302535.1844880/1‑94 (MQ=60)

                                                                             AATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACAT                  <  SRR4302535.3081680/94‑1 (MQ=60)

                                                                             AATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACAT                  <  SRR4302535.2288926/94‑1 (MQ=60)

                                                                              ATGCAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATT                 >  SRR4302535.3997897/1‑94 (MQ=60)

                                                                                 CAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACA              >  SRR4302535.3413947/1‑94 (MQ=60)

                                                                                 CAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACA              <  SRR4302535.4608750/94‑1 (MQ=60)

                                                                                 CAAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACA              >  SRR4302535.415374/1‑94 (MQ=60)

                                                                                  CAAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAG             <  SRR4302535.2868877/94‑1 (MQ=60)

                                                                                   AAGGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGG            >  SRR4302535.2159864/1‑94 (MQ=60)

                                                                                     GGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGG          >  SRR4302535.4352860/1‑94 (MQ=60)

                                                                                     GGTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGG          <  SRR4302535.1226204/94‑1 (MQ=60)

                                                                                      GTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGC         >  SRR4302535.3787306/1‑94 (MQ=60)

                                                                                      GTCACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGC         >  SRR4302535.2342310/1‑94 (MQ=60)

                                                                                        CACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAA       >  SRR4302535.4532395/1‑94 (MQ=60)

                                                                                         ACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAAC      >  SRR4302535.375975/1‑94 (MQ=60)

                                                                                         ACTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAAC      >  SRR4302535.3499206/1‑94 (MQ=60)

                                                                                          CTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAACT     <  SRR4302535.4295066/94‑1 (MQ=60)

                                                                                          CTGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAACT     >  SRR4302535.549027/1‑94 (MQ=60)

                                                                                           TGCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAACTT    >  SRR4302535.4019101/1‑94 (MQ=60)

                                                                                            GCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAACTTG   <  SRR4302535.2311679/94‑1 (MQ=60)

                                                                                            GCCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAACTTG   <  SRR4302535.4480825/94‑1 (MQ=60)

                                                                                             CCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAACTTGA  >  SRR4302535.2258200/1‑94 (MQ=60)

                                                                                             CCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAACTTGA  >  SRR4302535.1426855/1‑94 (MQ=60)

CGTTGAAAAGCGATGAGAATATGTTACCGCCAGACCTACGTGGTTACGCACCGCAAATCACGGGTGTCGCACAAACGAATGCAAAGGTCACTGTCTCACAGAACAACCGTATTATTTATCAAGAAAATGTTCCTCCAGGCCCATTTGCTATTACCAATTTATTCAATACATTACAGGGGCAACTTGA  >  NC_000913/3186173‑3186359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`