Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,188,237 T→C V114A (GTG→GCG)  b3047 → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,188,2370TC100.0% 1073.5 / NA 341V114A (GTG→GCG) b3047putative membrane protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (168/173);  total (168/173)

Only 100 of 353 total aligned reads displayed.

ATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCA  >  NC_000913/3188147‑3188326
                                                                                          |                                                                                         
 tCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAAcgcgcg                                                                                        >  1:4758313/1‑93 (MQ=255)
  cccAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCga                                                                                       <  2:7312671/93‑1 (MQ=255)
   ccAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCgag                                                                                      >  1:7353718/1‑93 (MQ=255)
      gTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGaaa                                                                                   <  2:3738349/93‑1 (MQ=255)
      gTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGaaa                                                                                   >  1:4016607/1‑93 (MQ=255)
        gAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATa                                                                                 <  2:6143280/93‑1 (MQ=255)
         agaaaaTTCAAATAAGAATAATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATAc                                                                                <  2:7200316/90‑1 (MQ=255)
         aGCAAATTCAAATAAGAATGATAACTCAGGAAATAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATAc                                                                                <  1:5370784/93‑1 (MQ=255)
          gCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATAcc                                                                               >  1:7400689/1‑93 (MQ=255)
          gCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATAcc                                                                               <  2:6463192/93‑1 (MQ=255)
            aaaTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGc                                                                             <  2:3563445/93‑1 (MQ=255)
            aaaTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGc                                                                             >  2:7444246/1‑93 (MQ=255)
             aaTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGcc                                                                            >  1:4698706/1‑93 (MQ=255)
             aaTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGcc                                                                            >  2:2748373/1‑93 (MQ=255)
                tCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCaa                                                                         >  2:7617194/1‑93 (MQ=255)
                  aaaTAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCaaaa                                                                       >  1:7097607/1‑93 (MQ=255)
                    aTAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACa                                                                     >  2:5189347/1‑93 (MQ=255)
                    aTAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACa                                                                     >  2:6087603/1‑93 (MQ=255)
                    aTAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACa                                                                     <  1:7843609/93‑1 (MQ=255)
                     tAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAg                                                                    <  1:2999419/93‑1 (MQ=255)
                     tAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAg                                                                    <  1:4613326/93‑1 (MQ=255)
                      aaGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGa                                                                   >  1:2798202/1‑93 (MQ=255)
                      aaGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGa                                                                   <  1:903053/93‑1 (MQ=255)
                      aaGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGa                                                                   <  1:5774119/93‑1 (MQ=255)
                       aGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGAt                                                                  >  1:7553136/1‑93 (MQ=255)
                       aGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGAt                                                                  <  2:470759/93‑1 (MQ=255)
                       aGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGAt                                                                  <  2:5691654/93‑1 (MQ=255)
                        gAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATa                                                                 <  2:5061188/93‑1 (MQ=255)
                        gAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATa                                                                 <  1:6513355/93‑1 (MQ=255)
                        gAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATa                                                                 >  2:1394078/1‑93 (MQ=255)
                          aTGATAACTCAGAAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaa                                                               <  2:1487552/93‑1 (MQ=255)
                           tGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaa                                                              >  1:840420/1‑93 (MQ=255)
                           tGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaa                                                              >  1:6846197/1‑93 (MQ=255)
                            gATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaaa                                                             <  2:805788/93‑1 (MQ=255)
                            gATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaaa                                                             >  2:2940957/1‑93 (MQ=255)
                             aTAACTCAGGAAAAAATTGCTCAGCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaaaa                                                            <  2:4286920/93‑1 (MQ=255)
                             aTAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaaaa                                                            >  2:552456/1‑93 (MQ=255)
                              tAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCACAACAGATaaaaaca                                                           >  1:6436442/1‑91 (MQ=255)
                              tAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTAAACGCGCGAGAAATACCGCCCAAAACAGATaaaaaaa                                                           <  1:1659086/93‑1 (MQ=255)
                               aaCTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaaaaaa                                                          <  1:1561716/93‑1 (MQ=255)
                                aCTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAt                                                         >  1:5554160/1‑93 (MQ=255)
                                 cTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAtg                                                        <  2:4154318/93‑1 (MQ=255)
                                 cTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAtg                                                        >  1:4902005/1‑93 (MQ=255)
                                  tCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAtgt                                                       >  2:681707/1‑93 (MQ=255)
                                   cAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAtgtg                                                      >  2:2720576/1‑93 (MQ=255)
                                    aGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGa                                                     <  2:4050325/93‑1 (MQ=255)
                                    aGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCGTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGa                                                     <  1:2551620/93‑1 (MQ=255)
                                     ggAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAt                                                    >  2:1766087/1‑93 (MQ=255)
                                     ggAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAt                                                    >  1:2430502/1‑93 (MQ=255)
                                     ggAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAt                                                    >  2:2837814/1‑93 (MQ=255)
                                     ggAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAt                                                    <  1:5656886/93‑1 (MQ=255)
                                       aaaaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGc                                                  <  2:5802391/93‑1 (MQ=255)
                                        aaaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                 <  1:5457309/93‑1 (MQ=255)
                                        aaaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                 <  2:7820748/93‑1 (MQ=255)
                                        aaaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCa                                                 <  1:4104776/93‑1 (MQ=255)
                                         aaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCaa                                                <  1:102371/93‑1 (MQ=255)
                                          aaaTTGCTCAACTTCCTAAAGACAGAGAAACTCTTTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAg                                               <  2:3324226/93‑1 (MQ=255)
                                          aaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAg                                               <  1:3710971/93‑1 (MQ=255)
                                             ttGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCa                                            >  2:5573689/1‑93 (MQ=255)
                                               gCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACt                                          <  1:425136/93‑1 (MQ=255)
                                                cTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTa                                         <  2:1144127/93‑1 (MQ=255)
                                                 tCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTAt                                        <  2:5241053/93‑1 (MQ=255)
                                                   aaCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgc                                      <  1:2315724/93‑1 (MQ=255)
                                                    aCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgca                                     <  2:2546009/93‑1 (MQ=255)
                                                    aCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgca                                     >  2:5971641/1‑93 (MQ=255)
                                                     cTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgcag                                    >  2:4605913/1‑93 (MQ=255)
                                                       tCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgcagca                                  >  1:1330580/1‑93 (MQ=255)
                                                        ccTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATCCCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCAc                                 <  2:156615/93‑1 (MQ=255)
                                                        ccTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGTTAAAAAAAATGTGATGCAAGTCACTATGCAGCAc                                 <  1:3472847/93‑1 (MQ=255)
                                                         cTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACg                                >  2:3829784/1‑93 (MQ=255)
                                                           aaaGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCa                              <  1:5903167/93‑1 (MQ=255)
                                                           aaaGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCa                              >  1:6009321/1‑93 (MQ=255)
                                                            aaGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAt                             <  2:2286749/93‑1 (MQ=255)
                                                             aGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAtt                            <  1:6688601/93‑1 (MQ=255)
                                                                cAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGaa                         >  2:6434024/1‑93 (MQ=255)
                                                                cAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGaa                         <  2:5409027/93‑1 (MQ=255)
                                                                  gagaACCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAAc                       <  2:3126412/93‑1 (MQ=255)
                                                                  gagaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAAc                       >  1:2581871/1‑93 (MQ=255)
                                                                   agaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACt                      <  1:51929/93‑1 (MQ=255)
                                                                    gaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTa                     >  1:7218408/1‑93 (MQ=255)
                                                                     aaaCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAt                    <  1:2111405/93‑1 (MQ=255)
                                                                     aaaCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAt                    <  1:7919466/93‑1 (MQ=255)
                                                                     aaaCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAt                    >  1:7277564/1‑93 (MQ=255)
                                                                      aaCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAtt                   <  1:1958951/93‑1 (MQ=255)
                                                                        cGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAACCAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCt                 >  1:2719731/1‑93 (MQ=255)
                                                                        cGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTTAAACTATTCt                 <  1:3260318/93‑1 (MQ=255)
                                                                           tcttctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggc              >  1:5076344/1‑93 (MQ=255)
                                                                           tcttctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggc              <  2:6372167/93‑1 (MQ=255)
                                                                            cttctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcg             >  1:451964/1‑93 (MQ=255)
                                                                             ttctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcgg            >  2:6734973/1‑93 (MQ=255)
                                                                             ttctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcgg            >  1:336829/1‑93 (MQ=255)
                                                                             ttctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcgg            >  1:6991380/1‑93 (MQ=255)
                                                                                tATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCa         >  1:3614688/1‑93 (MQ=255)
                                                                                   tttAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCaaaa      <  1:316356/93‑1 (MQ=255)
                                                                                   tttAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCaaaa      >  1:6098786/1‑93 (MQ=255)
                                                                                     tAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGACACTATTCTGGCGGCCAAAAGc    <  2:5011857/93‑1 (MQ=255)
                                                                                     tAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGc    <  1:3981078/93‑1 (MQ=255)
                                                                                      aaCGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGcc   >  2:7698380/1‑93 (MQ=255)
                                                                                       aCGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCa  <  2:4237150/93‑1 (MQ=255)
                                                                                       aCGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCa  <  2:1991974/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCA  >  NC_000913/3188147‑3188326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGA  >  NC_000913/3188145‑3188330
                                                                                            |                                                                                             
AAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCG                                                                                              <  SRR4302543.4416856/94‑1 (MQ=60)
AAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCG                                                                                              <  SRR4302543.5092511/94‑1 (MQ=60)
AAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCG                                                                                              <  SRR4302543.7896470/94‑1 (MQ=60)
AAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCG                                                                                              >  SRR4302543.2465375/1‑94 (MQ=60)
 AATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGC                                                                                             >  SRR4302543.1566480/1‑94 (MQ=60)
  ATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCG                                                                                            <  SRR4302543.3481592/94‑1 (MQ=60)
  ATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCG                                                                                            >  SRR4302543.4741764/1‑94 (MQ=60)
  ATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCG                                                                                            >  SRR4302543.4801793/1‑94 (MQ=60)
    CCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACTGAGAAACGCTCTTCTATTTTAACGCGCGAG                                                                                          <  SRR4302543.4740180/94‑1 (MQ=60)
    CCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAG                                                                                          >  SRR4302543.7424455/1‑94 (MQ=60)
    CCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAG                                                                                          <  SRR4302543.4740181/94‑1 (MQ=60)
     CCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGA                                                                                         >  SRR4302543.1418565/1‑94 (MQ=60)
     CCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGA                                                                                         >  SRR4302543.4884212/1‑94 (MQ=60)
      CAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAA                                                                                        <  SRR4302543.4652948/94‑1 (MQ=60)
      CAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAA                                                                                        >  SRR4302543.7360280/1‑94 (MQ=60)
       AGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAA                                                                                       >  SRR4302543.4052478/1‑94 (MQ=60)
       AGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAA                                                                                       >  SRR4302543.7982640/1‑94 (MQ=60)
        GTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAAT                                                                                      <  SRR4302543.369571/94‑1 (MQ=60)
        GTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAAT                                                                                      <  SRR4302543.2746741/94‑1 (MQ=60)
         TGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATA                                                                                     <  SRR4302543.2169920/94‑1 (MQ=60)
         TGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATA                                                                                     >  SRR4302543.7261582/1‑94 (MQ=60)
         TGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATA                                                                                     <  SRR4302543.104732/94‑1 (MQ=60)
          GAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATAC                                                                                    >  SRR4302543.3424724/1‑94 (MQ=60)
          GAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATAC                                                                                    <  SRR4302543.6989561/94‑1 (MQ=60)
           AGCAAATTCAAATAAGAATGATAACTCAGGAAATAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACC                                                                                   <  SRR4302543.5419412/94‑1 (MQ=60)
           AGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACC                                                                                   <  SRR4302543.3629907/94‑1 (MQ=60)
           AGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACC                                                                                   <  SRR4302543.1807069/94‑1 (MQ=60)
           AGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACC                                                                                   <  SRR4302543.5419413/94‑1 (MQ=60)
           AGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACC                                                                                   >  SRR4302543.7471736/1‑94 (MQ=60)
           AGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACC                                                                                   <  SRR4302543.83083/94‑1 (MQ=60)
           AGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACC                                                                                   <  SRR4302543.3066201/94‑1 (MQ=60)
             CAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGC                                                                                 >  SRR4302543.7375493/1‑94 (MQ=60)
             CAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGC                                                                                 <  SRR4302543.6828910/94‑1 (MQ=60)
             CAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGC                                                                                 >  SRR4302543.5839178/1‑94 (MQ=60)
              AAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCC                                                                                >  SRR4302543.4741616/1‑94 (MQ=60)
              AAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCC                                                                                >  SRR4302543.3215527/1‑94 (MQ=60)
              AAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCC                                                                                >  SRR4302543.4926280/1‑94 (MQ=60)
              AAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCC                                                                                >  SRR4302543.4540144/1‑94 (MQ=60)
              AAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCC                                                                                >  SRR4302543.203334/1‑94 (MQ=60)
               AATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCC                                                                               <  SRR4302543.4119294/94‑1 (MQ=60)
               AATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCC                                                                               >  SRR4302543.3557435/1‑94 (MQ=60)
               AATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCC                                                                               <  SRR4302543.2797866/94‑1 (MQ=60)
               AATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCC                                                                               <  SRR4302543.4004698/94‑1 (MQ=60)
               AATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCC                                                                               >  SRR4302543.6210641/1‑94 (MQ=60)
                ATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCA                                                                              <  SRR4302543.4727387/94‑1 (MQ=60)
                 TTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAA                                                                             >  SRR4302543.2612647/1‑94 (MQ=60)
                  TCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAA                                                                            >  SRR4302543.7280168/1‑94 (MQ=60)
                   CAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAA                                                                           <  SRR4302543.7290091/94‑1 (MQ=60)
                   CAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAA                                                                           >  SRR4302543.7166524/1‑94 (MQ=60)
                   CAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAA                                                                           >  SRR4302543.400487/1‑94 (MQ=60)
                    AAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAAC                                                                          <  SRR4302543.2010410/94‑1 (MQ=60)
                    AAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAAC                                                                          <  SRR4302543.5351108/94‑1 (MQ=60)
                     AATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACA                                                                         <  SRR4302543.2342115/94‑1 (MQ=60)
                     AATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACA                                                                         >  SRR4302543.1905815/1‑94 (MQ=60)
                      ATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACGGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAG                                                                        <  SRR4302543.5618992/94‑1 (MQ=60)
                      ATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAACACAG                                                                        >  SRR4302543.293509/1‑94 (MQ=60)
                      ATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAG                                                                        <  SRR4302543.6368858/94‑1 (MQ=60)
                      ATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAG                                                                        <  SRR4302543.7917540/94‑1 (MQ=60)
                      ATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAG                                                                        >  SRR4302543.4058226/1‑94 (MQ=60)
                       TAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGA                                                                       <  SRR4302543.2470416/94‑1 (MQ=60)
                       TAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGA                                                                       >  SRR4302543.5142521/1‑94 (MQ=60)
                       TAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGA                                                                       <  SRR4302543.4655231/94‑1 (MQ=60)
                       TAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGA                                                                       >  SRR4302543.2823781/1‑94 (MQ=60)
                       TAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGA                                                                       <  SRR4302543.3026619/94‑1 (MQ=60)
                        AAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGAT                                                                      >  SRR4302543.7625067/1‑94 (MQ=60)
                        AAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGAT                                                                      <  SRR4302543.5826678/94‑1 (MQ=60)
                        AAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGAT                                                                      <  SRR4302543.911011/94‑1 (MQ=60)
                          GAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAA                                                                    <  SRR4302543.6574709/94‑1 (MQ=60)
                          GAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAA                                                                    <  SRR4302543.6574708/94‑1 (MQ=60)
                          GAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAA                                                                    >  SRR4302543.6106581/1‑94 (MQ=60)
                           AATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAA                                                                   <  SRR4302543.6201163/94‑1 (MQ=60)
                            ATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAA                                                                  >  SRR4302543.847841/1‑94 (MQ=60)
                            ATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAA                                                                  >  SRR4302543.6910795/1‑94 (MQ=60)
                            ATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAA                                                                  >  SRR4302543.847842/1‑94 (MQ=60)
                             TGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTCAACGCGCGAGAAATACCGCCCAAAACAGATAAAAA                                                                 <  SRR4302543.4096212/94‑1 (MQ=60)
                               ATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCACAACAGATAAAAACA                                                               >  SRR4302543.6497086/1‑94 (MQ=60)
                               ATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAA                                                               >  SRR4302543.724630/1‑94 (MQ=60)
                               ATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAA                                                               <  SRR4302543.1614221/94‑1 (MQ=60)
                                TAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTAAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAA                                                              <  SRR4302543.1673943/94‑1 (MQ=60)
                                 AACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAT                                                             <  SRR4302543.1575659/94‑1 (MQ=60)
                                 AACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAT                                                             >  SRR4302543.5604680/1‑94 (MQ=60)
                                  ACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATG                                                            >  SRR4302543.4946691/1‑94 (MQ=60)
                                  ACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATG                                                            >  SRR4302543.7394149/1‑94 (MQ=60)
                                  ACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATG                                                            <  SRR4302543.6532983/94‑1 (MQ=60)
                                   CTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGT                                                           >  SRR4302543.6548766/1‑94 (MQ=60)
                                   CTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGT                                                           >  SRR4302543.6152820/1‑94 (MQ=60)
                                    TCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTG                                                          <  SRR4302543.7931677/94‑1 (MQ=60)
                                    TCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTG                                                          <  SRR4302543.3170364/94‑1 (MQ=60)
                                    TCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTG                                                          >  SRR4302543.5119874/1‑94 (MQ=60)
                                     CAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGA                                                         <  SRR4302543.1743522/94‑1 (MQ=60)
                                     CAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGA                                                         >  SRR4302543.7966356/1‑94 (MQ=60)
                                      AGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAT                                                        >  SRR4302543.5963372/1‑94 (MQ=60)
                                      AGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAT                                                        <  SRR4302543.2574931/94‑1 (MQ=60)
                                      AGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAT                                                        <  SRR4302543.4040579/94‑1 (MQ=60)
                                      AGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAT                                                        >  SRR4302543.2452435/1‑94 (MQ=60)
                                      AGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAT                                                        <  SRR4302543.4970106/94‑1 (MQ=60)
                                      AGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAT                                                        <  SRR4302543.2568792/94‑1 (MQ=60)
                                      AGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAT                                                        >  SRR4302543.5963373/1‑94 (MQ=60)
                                      AGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAGGTGAG                                                        >  SRR4302543.2452436/1‑94 (MQ=60)
                                      AGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAACACCGCCCAAAACAGATAAAAAAAATGTGAT                                                        <  SRR4302543.849914/94‑1 (MQ=60)
                                      AGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCGTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAT                                                        <  SRR4302543.2574930/94‑1 (MQ=60)
                                       GGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATG                                                       <  SRR4302543.3443853/94‑1 (MQ=60)
                                       GGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATG                                                       <  SRR4302543.825393/94‑1 (MQ=60)
                                       GGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATG                                                       <  SRR4302543.5708472/94‑1 (MQ=60)
                                       AGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATG                                                       <  SRR4302543.5708471/94‑1 (MQ=60)
                                        GAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGC                                                      >  SRR4302543.258750/1‑94 (MQ=60)
                                        GAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGA                                                      >  SRR4302543.5479533/1‑94 (MQ=60)
                                         AAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCA                                                     >  SRR4302543.4509487/1‑94 (MQ=60)
                                          AAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAA                                                    <  SRR4302543.2144495/94‑1 (MQ=60)
                                          AAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAA                                                    <  SRR4302543.5506780/94‑1 (MQ=60)
                                          AAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAA                                                    <  SRR4302543.4141694/94‑1 (MQ=60)
                                           AAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAG                                                   <  SRR4302543.103317/94‑1 (MQ=60)
                                           AAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAG                                                   <  SRR4302543.3609493/94‑1 (MQ=60)
                                           AAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAG                                                   <  SRR4302543.5515979/94‑1 (MQ=60)
                                            AAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGT                                                  <  SRR4302543.3743602/94‑1 (MQ=60)
                                             AATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTC                                                 >  SRR4302543.3221888/1‑94 (MQ=60)
                                               TTNCNNNANNTCCTAAANANNNNGNNACGCTCTTCTATTTNAACGCGCGAGAAATACCNCCCAAAACAGATAAAAAAAATGTGATGCAAGTCAC                                               <  SRR4302543.823437/94‑1 (MQ=60)
                                               TTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCAC                                               <  SRR4302543.5691885/94‑1 (MQ=60)
                                               TTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCAC                                               >  SRR4302543.6742747/1‑94 (MQ=60)
                                                 GCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTA                                             <  SRR4302543.429117/94‑1 (MQ=60)
                                                  CTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTAT                                            <  SRR4302543.7569217/94‑1 (MQ=60)
                                                  CTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTAT                                            <  SRR4302543.3345172/94‑1 (MQ=60)
                                                  CTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTAT                                            <  SRR4302543.59577/94‑1 (MQ=60)
                                                  CTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGAAAGTCACTAT                                            >  SRR4302543.1427692/1‑94 (MQ=60)
                                                    CAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGC                                          <  SRR4302543.7330878/94‑1 (MQ=60)
                                                    CAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGC                                          >  SRR4302543.7163562/1‑94 (MQ=60)
                                                    CAACTTCATAAAGACAGAAAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGC                                          <  SRR4302543.5299713/94‑1 (MQ=60)
                                                     AACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCA                                         >  SRR4302543.7010066/1‑94 (MQ=60)
                                                     AACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCA                                         <  SRR4302543.2247194/94‑1 (MQ=60)
                                                     AACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCA                                         <  SRR4302543.2336781/94‑1 (MQ=60)
                                                     AACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCA                                         <  SRR4302543.7466373/94‑1 (MQ=60)
                                                      ACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAG                                        <  SRR4302543.2366665/94‑1 (MQ=60)
                                                        TTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCA                                      >  SRR4302543.5826644/1‑94 (MQ=60)
                                                        TTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCA                                      >  SRR4302543.1342441/1‑94 (MQ=60)
                                                         TCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCAC                                     <  SRR4302543.4041780/94‑1 (MQ=60)
                                                          CCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGTTAAAAAAAATGTGATGCAAGTCACTATGCAGCACG                                    <  SRR4302543.3503951/94‑1 (MQ=60)
                                                           CTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGC                                   >  SRR4302543.4748726/1‑94 (MQ=60)
                                                            TAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCA                                  >  SRR4302543.6064706/1‑94 (MQ=60)
                                                             AAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAT                                 <  SRR4302543.4484839/94‑1 (MQ=60)
                                                             AAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAT                                 >  SRR4302543.4278310/1‑94 (MQ=60)
                                                             AAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCAT                                 <  SRR4302543.5957033/94‑1 (MQ=60)
                                                               AGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTG                               <  SRR4302543.7562241/94‑1 (MQ=60)
                                                               AGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTG                               <  SRR4302543.6751737/94‑1 (MQ=60)
                                                                GACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGA                              <  SRR4302543.577708/94‑1 (MQ=60)
                                                                 ACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAA                             <  SRR4302543.2647277/94‑1 (MQ=60)
                                                                 ACAGAGAAACGCTCTTCTATTNTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAA                             <  SRR4302543.6893526/94‑1 (MQ=60)
                                                                   AGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAAC                           <  SRR4302543.2850468/94‑1 (MQ=60)
                                                                   AGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAAC                           >  SRR4302543.5496570/1‑94 (MQ=60)
                                                                   AGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAAC                           >  SRR4302543.2605371/1‑94 (MQ=60)
                                                                   AGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGACCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAAC                           <  SRR4302543.4250292/94‑1 (MQ=60)
                                                                     AGAAACGCTCTTCTATTTTAACGCGCGATATATACCGCCCATAACAGATAAATAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTA                         >  SRR4302543.7113324/1‑94 (MQ=60)
                                                                     AGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTA                         <  SRR4302543.52389/94‑1 (MQ=60)
                                                                     AGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTA                         >  SRR4302543.7288376/1‑94 (MQ=60)
                                                                     AGAAACGCTCTTCTATTTTAACGCGCGAGAAATAACGCCCAAACNANATAAAAAAcangagatgaaaggcnnnntgnngcangcntnnanannn                         >  SRR4302543.5696871/1‑55 (MQ=43)
                                                                      GAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAT                        >  SRR4302543.7347858/1‑94 (MQ=60)
                                                                      GAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTAT                        >  SRR4302543.787824/1‑94 (MQ=60)
                                                                       AAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATT                       <  SRR4302543.8007034/94‑1 (MQ=60)
                                                                       AAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATT                       <  SRR4302543.2889673/94‑1 (MQ=60)
                                                                       AAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATT                       <  SRR4302543.7993852/94‑1 (MQ=60)
                                                                       AAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATT                       <  SRR4302543.2130307/94‑1 (MQ=60)
                                                                        AACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGTTGCAAGTCACTATGCAGCACGCATTGAAACTATTC                      >  SRR4302543.7476858/1‑94 (MQ=60)
                                                                        AACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTC                      <  SRR4302543.58131/94‑1 (MQ=60)
                                                                        AACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTC                      <  SRR4302543.1976523/94‑1 (MQ=60)
                                                                         ACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAACCAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCT                     >  SRR4302543.2744454/1‑94 (MQ=60)
                                                                         ACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCT                     <  SRR4302543.1048490/94‑1 (MQ=60)
                                                                          CGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTTAAACTATTCTG                    <  SRR4302543.3289788/94‑1 (MQ=60)
                                                                          CGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTG                    >  SRR4302543.1606599/1‑94 (MQ=60)
                                                                          CGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTG                    <  SRR4302543.557536/94‑1 (MQ=60)
                                                                           GCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGG                   >  SRR4302543.7430677/1‑94 (MQ=60)
                                                                           GCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGG                   <  SRR4302543.777532/94‑1 (MQ=60)
                                                                           GCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGG                   <  SRR4302543.336179/94‑1 (MQ=60)
                                                                            CTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGC                  >  SRR4302543.5122402/1‑94 (MQ=60)
                                                                            CTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGC                  >  SRR4302543.944420/1‑94 (MQ=60)
                                                                             TCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCG                 <  SRR4302543.3240141/94‑1 (MQ=60)
                                                                             TCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCG                 <  SRR4302543.7024492/94‑1 (MQ=60)
                                                                             TCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCG                 >  SRR4302543.456180/1‑94 (MQ=60)
                                                                              CTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGG                >  SRR4302543.7057181/1‑94 (MQ=60)
                                                                              CTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGG                >  SRR4302543.339922/1‑94 (MQ=60)
                                                                                 CTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCA             >  SRR4302543.3646557/1‑94 (MQ=60)
                                                                                 CTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCA             >  SRR4302543.3992441/1‑94 (MQ=60)
                                                                                  TATTTTAACGCGCGAGAAATACCGCCCAAAACAGAT‑AAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAA           <  SRR4302543.5905573/94‑1 (MQ=60)
                                                                                   ATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAA           >  SRR4302543.6728861/1‑94 (MQ=60)
                                                                                   ATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAA           >  SRR4302543.3685632/1‑94 (MQ=60)
                                                                                    TTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAA          >  SRR4302543.6156572/1‑94 (MQ=60)
                                                                                     TTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAG         <  SRR4302543.319216/94‑1 (MQ=60)
                                                                                      TTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGC        <  SRR4302543.2684440/94‑1 (MQ=60)
                                                                                      TTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGC        <  SRR4302543.4833710/94‑1 (MQ=60)
                                                                                       TAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCC       <  SRR4302543.4016385/94‑1 (MQ=60)
                                                                                       TAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCC       <  SRR4302543.4650062/94‑1 (MQ=60)
                                                                                        AACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCA      >  SRR4302543.5200213/1‑94 (MQ=60)
                                                                                         ACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCAT     <  SRR4302543.5170416/94‑1 (MQ=60)
                                                                                           GCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTG   <  SRR4302543.6954290/94‑1 (MQ=60)
                                                                                           GCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTG   >  SRR4302543.6448538/1‑94 (MQ=60)
                                                                                            CGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGA  <  SRR4302543.6846292/94‑1 (MQ=60)
                                                                                            CGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGA  <  SRR4302543.6846291/94‑1 (MQ=60)
                                                                                            CGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGA  <  SRR4302543.6846290/94‑1 (MQ=60)
                                                                                            CGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGA  <  SRR4302543.3274749/94‑1 (MQ=60)
                                                                                            |                                                                                             
AAATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCATTGA  >  NC_000913/3188145‑3188330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑