Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,224,926	+C	coding (1052/1434 nt)	ygjI →	putative oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,224,924	1	.	C	100.0%	556.1 / NA	173	Y350Y (TAT→TAC)	ygjI	putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (90/83); total (90/83)

Only 100 of 192 total aligned reads displayed.

CTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTAT‑CC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTATTC  >  NC_000913/3224831‑3225011

cTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTAt                                                                                           <  2:2947242/93‑1 (MQ=255)

 tttGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTAT‑c                                                                                         >  2:1480895/1‑93 (MQ=255)

 tttGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTAT‑c                                                                                         <  1:2288980/93‑1 (MQ=255)

   tGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTAT‑ccc                                                                                       <  2:4284788/93‑2 (MQ=255)

      tAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTAT‑cccgat                                                                                    >  1:4005233/1‑89 (MQ=255)

        aGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGc                                                                                  >  1:4479915/1‑93 (MQ=255)

         gAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATTA‑TTATACC‑GATGCt                                                                                 >  2:2656158/1‑93 (MQ=255)

         gAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCt                                                                                 >  2:1941292/1‑93 (MQ=255)

         gAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCt                                                                                 >  1:4418720/1‑93 (MQ=255)

          aaaaCCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTc                                                                                >  1:83835/1‑93 (MQ=255)

          aaaaCCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTc                                                                                <  2:1406518/93‑1 (MQ=255)

           aaaCCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCg                                                                               >  2:2651401/1‑93 (MQ=255)

             aCCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGt                                                                             >  1:4667750/1‑93 (MQ=255)

                gTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGCTCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTcc                                                                          >  2:4035668/1‑93 (MQ=255)

                gTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTcc                                                                          >  1:367828/1‑93 (MQ=255)

                gTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTcc                                                                          <  2:2122897/93‑1 (MQ=255)

                gTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTcc                                                                          >  2:4447083/1‑93 (MQ=255)

                 tCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCa                                                                         >  2:1939875/1‑93 (MQ=255)

                  cGAACTGAATGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCaa                                                                        <  1:4008052/93‑1 (MQ=255)

                   gAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAAt                                                                       >  1:2830219/1‑93 (MQ=255)

                    aaCTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATa                                                                      >  2:3523008/1‑93 (MQ=255)

                    aaCTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATa                                                                      >  1:389484/1‑93 (MQ=255)

                     aCTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATAc                                                                     >  2:2416381/1‑93 (MQ=255)

                       tGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCg                                                                   >  2:4560354/1‑93 (MQ=255)

                       tGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCg                                                                   >  1:525591/1‑93 (MQ=255)

                        gAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGt                                                                  <  1:571293/93‑1 (MQ=255)

                          aCGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGc                                                                >  1:2020059/1‑93 (MQ=255)

                           cGAAAACGGCGTTGCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCCTCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCa                                                               <  1:156405/93‑1 (MQ=255)

                            gAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAg                                                              >  1:4553580/1‑93 (MQ=255)

                              aaaCGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGa                                                            >  1:1133375/1‑93 (MQ=255)

                              aaaCGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGa                                                            >  2:3649042/1‑93 (MQ=255)

                               aaCGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGAt                                                           >  2:850488/1‑93 (MQ=255)

                               aaCGGCGTGCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGAt                                                           <  2:3998909/93‑1 (MQ=255)

                                aCGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATc                                                          <  2:1572366/93‑1 (MQ=255)

                                  ggCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCtg                                                        <  1:2893809/93‑1 (MQ=255)

                                   gCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCtga                                                       <  1:3606640/93‑1 (MQ=255)

                                   gCGTTCCGGCGC‑GCGCAGCGTGGATCCAGATCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATATCGTGCAGGATCtga                                                       >  2:3710019/1‑93 (MQ=255)

                                    cGTTCCGGC‑CGGCGCAGGGTTGATTCCATTCCTGATCGGTCTCCCGGTGATTATTTAT‑CC‑GATGCTCGGTTCCAATACCGTGCAGGATCtgat                                                      <  2:1079513/93‑1 (MQ=255)

                                     gTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCtgatg                                                     >  1:1206199/1‑93 (MQ=255)

                                       tCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGaa                                                   <  1:1103089/93‑1 (MQ=255)

                                        ccGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAAt                                                  >  1:1787901/1‑93 (MQ=255)

                                         cggcgc‑gcgcAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATa                                                 <  1:2233191/93‑1 (MQ=255)

                                          ggcgc‑gcgcaGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATAc                                                >  1:2132171/1‑93 (MQ=255)

                                          ggcgc‑gcgcaGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATAc                                                <  1:1531032/93‑1 (MQ=255)

                                             cgcgcgcAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACta                                              <  1:1069250/90‑1 (MQ=255)

                                              gcgcgcAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACtat                                             <  2:531871/91‑1 (MQ=255)

                                              gcgcgcAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACtat                                             <  1:1949111/91‑1 (MQ=255)

                                               cgcgcAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACtatt                                            >  2:4686963/2‑93 (MQ=255)

                                               cgcgcAGCGTGAATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACtatt                                            <  1:1159798/92‑1 (MQ=255)

                                                gcgcAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACGGTGCAGGATCTGATGAATACtatta                                           >  1:3297792/1‑93 (MQ=255)

                                                gcgcAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACtatta                                           <  2:4461737/93‑1 (MQ=255)

                                                 cgcAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACtattat                                          >  2:2915130/1‑93 (MQ=255)

                                                  gcAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTattatt                                         <  2:639883/93‑1 (MQ=255)

                                                  gcAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTattatt                                         >  2:230653/1‑93 (MQ=255)

                                                   cAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTAttatta                                        <  1:3157804/93‑1 (MQ=255)

                                                    aGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTaa                                       >  2:1877403/1‑93 (MQ=255)

                                                     gCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAat                                      >  2:3565951/1‑93 (MQ=255)

                                                     gCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAat                                      <  1:3987211/93‑1 (MQ=255)

                                                     gCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAat                                      <  2:1920087/93‑1 (MQ=255)

                                                       gTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAatat                                    >  1:3364805/1‑93 (MQ=255)

                                                         ggATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGa                                  >  1:4290725/1‑93 (MQ=255)

                                                          gATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTTTTAATATAAc                                 >  1:1445590/1‑93 (MQ=255)

                                                          gATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGAc                                 <  1:1310858/93‑1 (MQ=255)

                                                          gATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGAc                                 <  1:241036/93‑1 (MQ=255)

                                                          gATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGAc                                 <  2:2500524/93‑1 (MQ=255)

                                                           aTCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCGAATACCGTGCAGGATCTGATGAATACTATTATTAATATGAcc                                <  1:2516390/93‑1 (MQ=255)

                                                           aTCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGAcc                                <  1:2155394/93‑1 (MQ=255)

                                                            tCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGAccg                               >  1:3517470/1‑93 (MQ=255)

                                                             ccAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGAccgc                              >  1:2085781/1‑93 (MQ=255)

                                                              cAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGAccgcc                             >  1:656461/1‑93 (MQ=255)

                                                              cAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGAccgcc                             >  2:2784345/1‑93 (MQ=255)

                                                              cAGTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGAccgcc                             >  1:300995/1‑93 (MQ=255)

                                                                gTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACcgccgc                           <  1:996142/93‑1 (MQ=255)

                                                                gTTCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACcgccgc                           >  2:4189452/1‑93 (MQ=255)

                                                                 ttCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCa                          >  1:2767360/1‑93 (MQ=255)

                                                                 ttCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCa                          <  2:1194377/93‑1 (MQ=255)

                                                                  tCCTGATCGTGACCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATCCCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAg                         <  2:3373508/93‑1 (MQ=255)

                                                                  tCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAg                         >  2:4345380/1‑93 (MQ=255)

                                                                  tCCTGATCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAg                         <  2:4103625/93‑1 (MQ=255)

                                                                       aTCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTcc                    <  2:3345786/93‑1 (MQ=255)

                                                                        tCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCa                   >  2:603832/1‑93 (MQ=255)

                                                                        tCGTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCa                   <  2:1296724/93‑1 (MQ=255)

                                                                         catCATCCCGCTGATGA‑TTAT‑CCTGATGCTCGGTTCCAATACCGTGCAGGATATGATGAATACTATTATTAATATGACCGCCGCAGCGTCCAt                  <  1:2973465/91‑1 (MQ=255)

                                                                          gTCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATg                 >  1:2689744/1‑93 (MQ=255)

                                                                           tCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGc                >  1:2146271/1‑93 (MQ=255)

                                                                           tCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGc                <  2:3266370/93‑1 (MQ=255)

                                                                           tCATCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGc                >  2:3004869/1‑93 (MQ=255)

                                                                             aTCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCtt              >  2:1259427/1‑93 (MQ=255)

                                                                              tCCCGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTc             <  2:3244918/93‑1 (MQ=255)

                                                                                ccGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTccg           >  2:1736220/1‑93 (MQ=255)

                                                                                ccGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTccg           >  2:810765/1‑93 (MQ=255)

                                                                                ccGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTccg           >  2:1613720/1‑93 (MQ=255)

                                                                                 cGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTccgc          >  2:4130318/1‑93 (MQ=255)

                                                                                 cGCTGATGA‑TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTccgc          <  2:1765496/93‑1 (MQ=255)

                                                                                     gatga‑tTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGtt      >  1:2667390/1‑93 (MQ=255)

                                                                                      atga‑tTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTa     >  1:3152408/1‑93 (MQ=255)

                                                                                      atga‑tTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTa     <  1:3037536/93‑1 (MQ=255)

                                                                                       tga‑tTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTAt    <  2:3473365/93‑1 (MQ=255)

                                                                                         a‑tTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTATtc  <  2:1187129/93‑1 (MQ=255)

                                                                                         a‑tTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTATtc  >  2:3787665/1‑93 (MQ=255)

CTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGA‑TTAT‑CC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTATTC  >  NC_000913/3224831‑3225011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTAT‑CC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTATTCATCATGCT  >  NC_000913/3224832‑3225019

TTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTAT‑CC                                                                                                <  SRR4302535.2305330/94‑1 (MQ=60)

  TGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTAT‑CCcg                                                                                              <  SRR4302535.1866100/94‑3 (MQ=60)

    GTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GAT                                                                                            >  SRR4302535.4032631/1‑94 (MQ=60)

     TAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATG                                                                                           <  SRR4302535.4015001/94‑1 (MQ=60)

      AAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGC                                                                                          >  SRR4302535.4510668/1‑94 (MQ=60)

      AAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGC                                                                                          >  SRR4302535.2593388/1‑94 (MQ=60)

       AGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCT                                                                                         >  SRR4302535.4448975/1‑94 (MQ=60)

        GAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTC                                                                                        >  SRR4302535.84424/1‑94 (MQ=60)

         AAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCG                                                                                       <  SRR4302535.303911/94‑1 (MQ=60)

          AAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGG                                                                                      >  SRR4302535.368349/1‑94 (MQ=60)

           AACCGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGT                                                                                     >  SRR4302535.4699293/1‑94 (MQ=60)

              CGTCGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCC                                                                                  >  SRR4302535.370367/1‑94 (MQ=60)

                 CGAACTGAATGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAAT                                                                               <  SRR4302535.4035472/94‑1 (MQ=60)

                 CGAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAAT                                                                               >  SRR4302535.2850306/1‑94 (MQ=60)

                  GAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATA                                                                              <  SRR4302535.2155182/94‑1 (MQ=60)

                  GAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATA                                                                              >  SRR4302535.4476850/1‑94 (MQ=60)

                  GAACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATA                                                                              >  SRR4302535.392194/1‑94 (MQ=60)

                   AACTGAACGAAAACGGCGTTCCGGCGC‑GCGCCGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGATCCAATAC                                                                             >  SRR4302535.401143/1‑94 (MQ=60)

                    ACTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACC                                                                            >  SRR4302535.2287724/1‑94 (MQ=60)

                     CTGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCG                                                                           >  SRR4302535.529262/1‑94 (MQ=60)

                      TGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGT                                                                          >  SRR4302535.3626310/1‑94 (MQ=60)

                      TGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGT                                                                          >  SRR4302535.3178931/1‑94 (MQ=60)

                      TGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGT                                                                          <  SRR4302535.269115/94‑1 (MQ=60)

                      TGAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGT                                                                          <  SRR4302535.2418456/94‑1 (MQ=60)

                       GAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTG                                                                         <  SRR4302535.3245646/94‑1 (MQ=60)

                       GAACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTG                                                                         <  SRR4302535.575303/94‑1 (MQ=60)

                        AACGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGC                                                                        >  SRR4302535.2034625/1‑94 (MQ=60)

                          CGAAAACGGCGTTGCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCCTCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAG                                                                      <  SRR4302535.157511/94‑1 (MQ=60)

                          CGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAG                                                                      >  SRR4302535.4584691/1‑94 (MQ=60)

                          CGAAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAG                                                                      >  SRR4302535.100354/1‑94 (MQ=60)

                            AAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGA                                                                    >  SRR4302535.3493174/1‑94 (MQ=60)

                            AAAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGA                                                                    >  SRR4302535.1141465/1‑94 (MQ=60)

                             AAACGGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGAT                                                                   <  SRR4302535.769657/94‑1 (MQ=60)

                                 GGCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGA                                                               <  SRR4302535.2914278/94‑1 (MQ=60)

                                  GCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGAT                                                              <  SRR4302535.3631660/94‑1 (MQ=60)

                                  GCGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGAT                                                              <  SRR4302535.2712377/94‑1 (MQ=60)

                                   CGTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATG                                                             >  SRR4302535.1214865/1‑94 (MQ=60)

                                    GTTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGA                                                            <  SRR4302535.964473/94‑1 (MQ=60)

                                     TTCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAA                                                           <  SRR4302535.4580696/94‑1 (MQ=60)

                                      TCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAAT                                                          >  SRR4302535.1800836/1‑94 (MQ=60)

                                      TCCGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAAT                                                          <  SRR4302535.1110970/94‑1 (MQ=60)

                                        CGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATAC                                                        <  SRR4302535.2249073/94‑1 (MQ=60)

                                        CGGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATAC                                                        >  SRR4302535.2147541/1‑94 (MQ=60)

                                         GGCGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACT                                                       <  SRR4302535.1542062/94‑1 (MQ=60)

                                           CGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTAT                                                     <  SRR4302535.4644050/94‑1 (MQ=60)

                                           CGC‑GCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTAT                                                     <  SRR4302535.1076851/94‑1 (MQ=60)

                                             gcGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATT                                                    <  SRR4302535.2522254/92‑1 (MQ=60)

                                             gcGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATT                                                    <  SRR4302535.1963141/92‑1 (MQ=60)

                                              CGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACGGTGCAGGATCTGATGAATACTATTA                                                   >  SRR4302535.3320722/1‑94 (MQ=60)

                                              CGCGCAGCGTGAATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTA                                                   <  SRR4302535.1168086/94‑1 (MQ=60)

                                                CGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATT                                                 <  SRR4302535.384636/94‑1 (MQ=60)

                                                  CAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAA                                               <  SRR4302535.2169513/94‑1 (MQ=60)

                                                  CAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAA                                               <  SRR4302535.3179724/94‑1 (MQ=60)

                                                   AGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAAT                                              <  SRR4302535.54259/94‑1 (MQ=60)

                                                    GCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATA                                             <  SRR4302535.4014472/94‑1 (MQ=60)

                                                     CGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATAT                                            >  SRR4302535.3388216/1‑94 (MQ=60)

                                                     CGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATAT                                            <  SRR4302535.3129298/94‑1 (MQ=60)

                                                      GTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATG                                           >  SRR4302535.1143163/1‑94 (MQ=60)

                                                      GTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATG                                           <  SRR4302535.221682/94‑1 (MQ=60)

                                                       TGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGA                                          >  SRR4302535.4320072/1‑94 (MQ=60)

                                                       TGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGA                                          >  SRR4302535.3355934/1‑94 (MQ=60)

                                                        GGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTTTTAATATAAC                                         >  SRR4302535.1455928/1‑94 (MQ=60)

                                                        GGATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGAC                                         <  SRR4302535.4419407/94‑1 (MQ=60)

                                                         GATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACC                                        <  SRR4302535.242689/94‑1 (MQ=60)

                                                         GATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACC                                        <  SRR4302535.1320227/94‑1 (MQ=60)

                                                          ATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCGAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCG                                       <  SRR4302535.2534528/94‑1 (MQ=60)

                                                          ATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCG                                       <  SRR4302535.2170882/94‑1 (MQ=60)

                                                          ATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCG                                       >  SRR4302535.1292347/1‑94 (MQ=60)

                                                          ATCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCG                                       >  SRR4302535.3541906/1‑94 (MQ=60)

                                                           TCCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGC                                      >  SRR4302535.2100801/1‑94 (MQ=60)

                                                            CCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCC                                     >  SRR4302535.303090/1‑94 (MQ=60)

                                                            CCAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCC                                     >  SRR4302535.661042/1‑94 (MQ=60)

                                                             CAGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCG                                    >  SRR4302535.2973992/1‑94 (MQ=60)

                                                              AGTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGC                                   >  SRR4302535.284872/1‑94 (MQ=60)

                                                               GTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCA                                  >  SRR4302535.2787065/1‑94 (MQ=60)

                                                               GTTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCA                                  <  SRR4302535.1003217/94‑1 (MQ=60)

                                                                TTCCTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAG                                 >  SRR4302535.1331374/1‑94 (MQ=60)

                                                                TTCCTGATCGCCATCCCGCTGATCATTATCCC‑GATGCTCGGTTCCAATACCGTGCATGATCTGATGAATACTATTATTAATATGACCGCCGCAG                                 <  SRR4302535.1552057/94‑1 (MQ=60)

                                                                   CTGATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGAACGCCGCAGCGT                              >  SRR4302535.2039133/1‑94 (MQ=60)

                                                                      ATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCA                           <  SRR4302535.1136716/94‑1 (MQ=60)

                                                                      ATCGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCA                           >  SRR4302535.483107/1‑94 (MQ=60)

                                                                        CGTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATG                         >  SRR4302535.2708965/1‑94 (MQ=60)

                                                                        CATCATCCCGCTGATGATTAT‑CCTGATGCTCGGTTCCAATACCGTGCAGGATATGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATG                         <  SRR4302535.2994337/94‑1 (MQ=60)

                                                                         GTCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGC                        >  SRR4302535.2161711/1‑94 (MQ=60)

                                                                          TCATCCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCT                       <  SRR4302535.4072804/94‑1 (MQ=60)

                                                                              CCCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCG                   >  SRR4302535.1172188/1‑94 (MQ=60)

                                                                               CCGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGC                  <  SRR4302535.1522673/94‑1 (MQ=60)

                                                                                CGCTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCC                 <  SRR4302535.4003547/94‑1 (MQ=60)

                                                                                  CTGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGT               >  SRR4302535.2013771/1‑94 (MQ=60)

                                                                                   TGATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTT              >  SRR4302535.2686484/1‑94 (MQ=60)

                                                                                    GATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTA             >  SRR4302535.3174314/1‑94 (MQ=60)

                                                                                     ATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTAT            >  SRR4302535.584561/1‑94 (MQ=60)

                                                                                     ATGATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTAT            <  SRR4302535.3058815/94‑1 (MQ=60)

                                                                                        ATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTATTCA         >  SRR4302535.568198/1‑94 (MQ=60)

                                                                                        ATTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTATTCA         <  SRR4302535.2859517/94‑1 (MQ=60)

                                                                                         TTATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTATTCAT        <  SRR4302535.971934/94‑1 (MQ=60)

                                                                                          TATCCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTATTCATC       >  SRR4302535.778143/1‑94 (MQ=60)

                                                                                           atcCC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTATTCATCA      >  SRR4302535.2058646/4‑94 (MQ=60)

                                                                                            C‑CC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTATTCATCATG    >  SRR4302535.1387954/1‑94 (MQ=60)

                                                                                               C‑GATGCTCGGTTCCAATACAGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCCTGCTTGCGACGTTATTgataatgat  >  SRR4302535.2703460/1‑85 (MQ=60)

TTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTGATGATTAT‑CC‑GATGCTCGGTTCCAATACCGTGCAGGATCTGATGAATACTATTATTAATATGACCGCCGCAGCGTCCATGCTTCCGCCGTTATTCATCATGCT  >  NC_000913/3224832‑3225019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`