Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,228,614 |
G→A |
A696T (GCT→ACT) |
ygjK → |
putative isomerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,228,614 | 0 | G | A | 99.5%
| 684.9
/ NA
| 202 | A696T (GCT→ACT) | ygjK | putative isomerase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (95/106); minor base T (0/1); total (95/107) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 211 total aligned reads displayed.
GCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGT > NC_000913/3228524‑3228703
|
gCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACt > 1:3431424/1‑93 (MQ=255)
ccAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACtt > 1:4253666/1‑93 (MQ=255)
cAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACttt < 2:4655466/93‑1 (MQ=255)
cAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACttt > 2:2004177/1‑93 (MQ=255)
aaTGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACtttt < 1:4422858/93‑1 (MQ=255)
aTGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTg > 2:1245770/1‑93 (MQ=255)
aTGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTg > 2:3254518/1‑93 (MQ=255)
tGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTgg < 1:1477591/93‑1 (MQ=255)
gCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGgc < 2:1172887/93‑1 (MQ=255)
ccGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGgcg > 2:265768/1‑93 (MQ=255)
cGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGgcgc < 1:917590/93‑1 (MQ=255)
gACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCt > 1:4476640/1‑93 (MQ=255)
gACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCt < 1:2920929/93‑1 (MQ=255)
aCGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTg > 1:1448429/1‑93 (MQ=255)
cgcgGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGa < 2:4372573/93‑1 (MQ=255)
cgcgGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGa < 2:2089085/93‑1 (MQ=255)
cgcgGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGa < 1:4020187/93‑1 (MQ=255)
gcgGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGat > 1:4186045/1‑93 (MQ=255)
ggtggtGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGatat > 2:1813252/1‑93 (MQ=255)
gtggtgAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATc < 1:4561885/93‑1 (MQ=255)
tggtgAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCt > 2:345747/1‑93 (MQ=255)
ggtgAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATcca < 2:2448244/93‑3 (MQ=255)
ggtgAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTa < 2:2767279/93‑1 (MQ=255)
ggtgAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTa > 1:1689431/1‑93 (MQ=255)
tgAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACt < 2:1741302/93‑1 (MQ=255)
aaGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTgg < 1:724948/93‑1 (MQ=255)
aaGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTgg < 1:1138193/93‑1 (MQ=255)
gTGATGGTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCgg > 2:3900454/1‑92 (MQ=255)
tGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTg < 2:500831/93‑1 (MQ=255)
gATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTgg < 1:1641420/93‑1 (MQ=255)
gATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTgg < 1:55624/93‑1 (MQ=255)
tCGATCCTAAAGAGTTGAACACCTTTGTCCCGCTGGGAACGGCGGCGCTAACCAATCCGACTTTTGTCGCTGATATCTACTGGCGTGGGcgcg > 1:3557480/1‑93 (MQ=255)
gATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTa > 1:3067403/1‑93 (MQ=255)
aTCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTAt < 2:1695501/93‑1 (MQ=255)
aTCCTAAAGAGTCCACTACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTAt < 2:3403664/93‑1 (MQ=255)
tCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTTGCGCTGATATCTACTGGCGTGGGCGCGTATg > 1:3737427/1‑93 (MQ=255)
tCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATg > 1:2245363/1‑93 (MQ=255)
ccTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATgg < 2:2188993/93‑1 (MQ=255)
ccTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATgg < 2:3356639/93‑1 (MQ=255)
ccTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATgg < 2:1135196/93‑1 (MQ=255)
cTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGGTATCTACTGGCGTAGGCGCGGATggg > 2:3428024/1‑93 (MQ=255)
cTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATggg < 1:4535359/93‑1 (MQ=255)
tAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATgggg > 1:828227/1‑92 (MQ=255)
tAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATgggg > 1:1283263/1‑92 (MQ=255)
tAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGt > 2:919723/1‑93 (MQ=255)
aaaGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTg < 2:1653969/93‑1 (MQ=255)
aaGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTgg > 1:1011838/1‑93 (MQ=255)
aaGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGCgg > 1:4066969/1‑93 (MQ=255)
agagTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGa > 2:4168422/1‑93 (MQ=255)
agagTTCAACACCTTTGTCACGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGa < 1:2496792/93‑1 (MQ=255)
gagTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGAt < 1:3675685/93‑1 (MQ=255)
gagTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGAt < 2:398680/93‑1 (MQ=255)
gagTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGAt < 2:3172969/93‑1 (MQ=255)
gTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCa < 1:167544/93‑1 (MQ=255)
aaCACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTc > 1:2697447/1‑93 (MQ=255)
aaCACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTc < 2:4472568/93‑1 (MQ=255)
aaCACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTc < 1:2001316/93‑1 (MQ=255)
acCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTgg > 2:4010742/1‑93 (MQ=255)
acCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTgg < 2:854579/93‑1 (MQ=255)
acCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTgg < 1:38437/93‑1 (MQ=255)
acCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTgg < 2:4070883/93‑1 (MQ=255)
acCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTgg > 1:2107657/1‑93 (MQ=255)
ccTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGt < 2:371935/93‑1 (MQ=255)
ccTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGt > 2:1012463/1‑93 (MQ=255)
cTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGtt > 1:1091993/1‑93 (MQ=255)
cTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGGGGATCAGTTCTGGtt > 2:2986742/1‑93 (MQ=255)
ttGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTg < 2:4481595/93‑1 (MQ=255)
tGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTgg < 1:28053/93‑1 (MQ=255)
gTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGt > 1:208608/1‑93 (MQ=255)
tCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTc > 2:57867/1‑93 (MQ=255)
cccGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCt < 2:462477/93‑1 (MQ=255)
ccGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTg > 2:1872591/1‑93 (MQ=255)
cGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGa < 1:2162206/93‑1 (MQ=255)
cTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGaaa > 1:2867623/1‑93 (MQ=255)
cTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGaaa > 1:583961/1‑93 (MQ=255)
tGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAg > 1:3332471/1‑93 (MQ=255)
tGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAg < 2:3222061/93‑1 (MQ=255)
gggAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAgg < 2:676157/93‑1 (MQ=255)
ggAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAggg < 2:3528754/93‑1 (MQ=255)
gAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGa > 1:705956/1‑93 (MQ=255)
gAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGa < 2:1567497/93‑1 (MQ=255)
gAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGa < 1:3218583/93‑1 (MQ=255)
aCGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATg > 1:2052580/1‑93 (MQ=255)
aCGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATg > 2:3037662/1‑93 (MQ=255)
cggcggCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATgg < 1:2314581/93‑1 (MQ=255)
gcggcgTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAg > 1:647849/1‑93 (MQ=255)
cgTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGtt < 2:1183933/93‑1 (MQ=255)
gTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTa > 2:141170/1‑93 (MQ=255)
ttAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTAc < 1:1350209/93‑1 (MQ=255)
ttAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTAc > 1:853471/1‑93 (MQ=255)
aaCCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACgg < 2:1512973/93‑1 (MQ=255)
aCCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGt > 2:428336/1‑93 (MQ=255)
aCCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGt < 1:3386663/93‑1 (MQ=255)
cAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTa < 2:3408103/93‑1 (MQ=255)
aTCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATc < 2:2373046/93‑1 (MQ=255)
tCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCg > 1:257912/1‑93 (MQ=255)
tCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCg > 2:3313327/1‑93 (MQ=255)
ccGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGt < 1:2217990/93‑1 (MQ=255)
ccGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGt < 1:4491616/93‑1 (MQ=255)
ccGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGt > 1:4641979/1‑93 (MQ=255)
|
GCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGT > NC_000913/3228524‑3228703
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGGCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATG > NC_000913/3228521‑3228707
|
CAGGCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGA > SRR4302535.3007708/1‑94 (MQ=60)
AGGCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGAC < SRR4302535.3576583/94‑1 (MQ=60)
AGGCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGAC > SRR4302535.4076849/1‑94 (MQ=60)
AGGCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGAC > SRR4302535.3544223/1‑94 (MQ=60)
GGCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAATGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACT < SRR4302535.693030/94‑1 (MQ=60)
GGCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACT < SRR4302535.875092/94‑1 (MQ=60)
GGCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACT < SRR4302535.2488307/94‑1 (MQ=60)
GGCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACT > SRR4302535.3455273/1‑94 (MQ=60)
GCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTT > SRR4302535.4282813/1‑94 (MQ=60)
CAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTT > SRR4302535.976877/1‑94 (MQ=60)
AATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTG < SRR4302535.4453147/94‑1 (MQ=60)
TGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGC < SRR4302535.1488167/94‑1 (MQ=60)
TGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGC < SRR4302535.357172/94‑1 (MQ=60)
CCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGAGGCGTTAACCAATCCGACTTTTGGCGC > SRR4302535.4634907/1‑94 (MQ=60)
CGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCT > SRR4302535.2324071/1‑94 (MQ=60)
CGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCT < SRR4302535.924098/94‑1 (MQ=60)
CGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCT > SRR4302535.4507374/1‑94 (MQ=60)
CGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCT < SRR4302535.4214234/94‑1 (MQ=60)
GACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTG > SRR4302535.1458785/1‑94 (MQ=60)
GACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTG < SRR4302535.2941536/94‑1 (MQ=60)
CGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGAT < SRR4302535.4047695/94‑1 (MQ=60)
CGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGAT > SRR4302535.4214696/1‑94 (MQ=60)
CGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATAT < SRR4302535.2094607/94‑1 (MQ=60)
GGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATC < SRR4302535.4262544/94‑1 (MQ=60)
GGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATC < SRR4302535.2596777/94‑1 (MQ=60)
GTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCT < SRR4302535.4593018/94‑1 (MQ=60)
TGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTA > SRR4302535.1701659/1‑94 (MQ=60)
GGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTAC < SRR4302535.3453403/94‑1 (MQ=60)
GTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACT < SRR4302535.1794225/94‑1 (MQ=60)
GTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACT < SRR4302535.847366/94‑1 (MQ=60)
AAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGC < SRR4302535.730033/94‑1 (MQ=60)
AAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGC < SRR4302535.1146309/94‑1 (MQ=60)
AGGTGATGCTCGATCCTAAAGAGTTCAACACTTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCG > SRR4302535.45217/1‑94 (MQ=60)
AGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCG < SRR4302535.2908601/94‑1 (MQ=60)
GATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGG < SRR4302535.56031/94‑1 (MQ=60)
GATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGG < SRR4302535.1653284/94‑1 (MQ=60)
ATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGC > SRR4302535.4458195/1‑94 (MQ=60)
ATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGC > SRR4302535.566986/1‑94 (MQ=60)
ATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGC < SRR4302535.723928/94‑1 (MQ=60)
GCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGC > SRR4302535.1559844/1‑94 (MQ=60)
CTCGATCCTAAAGAGTTGAACACCTTTGTCCCGCTGGGAACGGCGGCGCTAACCAATCCGACTTTTGTCGCTGATATCTACTGGCGTGGGCGCG > SRR4302535.3582153/1‑94 (MQ=60)
CTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCG > SRR4302535.373202/1‑94 (MQ=60)
CGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTA > SRR4302535.3088834/1‑94 (MQ=60)
GATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTAT < SRR4302535.1698313/94‑1 (MQ=60)
ATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTTGCGCTGATATCTACTGGCGTGGGCGCGTATG > SRR4302535.3763292/1‑94 (MQ=60)
ATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATG > SRR4302535.2261328/1‑94 (MQ=60)
ATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATG > SRR4302535.3088840/1‑94 (MQ=60)
TCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGG > SRR4302535.82629/1‑94 (MQ=60)
CTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGTCTTTGGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGT < SRR4302535.3617315/94‑1 (MQ=60)
CTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGT < SRR4302535.4070639/94‑1 (MQ=60)
CTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGT < SRR4302535.4566392/94‑1 (MQ=60)
CTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGT > SRR4302535.4293701/1‑94 (MQ=60)
CTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGG > SRR4302535.834027/1‑94 (MQ=60)
CTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGG > SRR4302535.1292413/1‑94 (MQ=60)
AAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGG > SRR4302535.1019028/1‑94 (MQ=60)
AAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGG > SRR4302535.2119288/1‑94 (MQ=60)
AAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGCGG > SRR4302535.4094798/1‑94 (MQ=60)
AGAGTTCAACACCTTTGTCACGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGAT < SRR4302535.2514805/94‑1 (MQ=60)
GAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATC < SRR4302535.1156287/94‑1 (MQ=60)
GAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATC < SRR4302535.3701135/94‑1 (MQ=60)
GTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAG < SRR4302535.168708/94‑1 (MQ=60)
CAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTC > SRR4302535.2716724/1‑94 (MQ=60)
AACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCT < SRR4302535.3966854/94‑1 (MQ=60)
AACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCT < SRR4302535.2015735/94‑1 (MQ=60)
AACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGGGGATCAGTTCT > SRR4302535.3431762/1‑94 (MQ=60)
ACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTG < SRR4302535.2250391/94‑1 (MQ=60)
ACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTG > SRR4302535.8980/1‑94 (MQ=60)
CACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGG > SRR4302535.2122859/1‑94 (MQ=60)
CACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGG > SRR4302535.694835/1‑94 (MQ=60)
CACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGG > SRR4302535.2410175/1‑94 (MQ=60)
ACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGT < SRR4302535.38733/94‑1 (MQ=60)
CCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTT > SRR4302535.1031127/1‑94 (MQ=60)
CCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTT > SRR4302535.1099772/1‑94 (MQ=60)
CTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTT < SRR4302535.2188504/94‑1 (MQ=60)
CTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTT > SRR4302535.4336340/1‑94 (MQ=60)
TTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTG > SRR4302535.3379670/1‑94 (MQ=60)
TTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTG < SRR4302535.4544836/94‑1 (MQ=60)
TTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTG < SRR4302535.1662955/94‑1 (MQ=60)
TGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGT < SRR4302535.3312596/94‑1 (MQ=60)
TGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGT > SRR4302535.210041/1‑94 (MQ=60)
TGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGT < SRR4302535.28274/94‑1 (MQ=60)
GTCCCGCTGTGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTC < SRR4302535.1907338/94‑1 (MQ=60)
GTCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTT > SRR4302535.1462755/1‑94 (MQ=60)
TCCCGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCT < SRR4302535.675399/94‑1 (MQ=60)
CCCGCTGGGAACGGCGGAGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTG > SRR4302535.739801/1‑94 (MQ=60)
CGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAA < SRR4302535.2177723/94‑1 (MQ=60)
CGCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTAGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAA > SRR4302535.2622635/1‑94 (MQ=60)
GCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAA > SRR4302535.588056/1‑94 (MQ=60)
GCTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAA > SRR4302535.2887934/1‑94 (MQ=60)
CTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAG > SRR4302535.3355662/1‑94 (MQ=60)
CTGGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAG < SRR4302535.2856418/94‑1 (MQ=60)
GGGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGG < SRR4302535.3019612/94‑1 (MQ=60)
GGAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGA > SRR4302535.710915/1‑94 (MQ=60)
GAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGAT < SRR4302535.621988/94‑1 (MQ=60)
GAACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGAT < SRR4302535.3240877/94‑1 (MQ=60)
AACGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATG > SRR4302535.2067359/1‑94 (MQ=60)
CGGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGA < SRR4302535.2331141/94‑1 (MQ=60)
GGCGGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAG > SRR4302535.652364/1‑94 (MQ=60)
GGCGTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGT > SRR4302535.1106908/1‑94 (MQ=60)
GTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTAC > SRR4302535.2551912/1‑94 (MQ=60)
GTTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTAC > SRR4302535.859481/1‑94 (MQ=60)
TTAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACG < SRR4302535.1359852/94‑1 (MQ=60)
TAACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGG > SRR4302535.142233/1‑94 (MQ=60)
ACCAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTT < SRR4302535.3410228/94‑1 (MQ=60)
CAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTAT < SRR4302535.2171333/94‑1 (MQ=60)
CAATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTAT > SRR4302535.1330761/1‑94 (MQ=60)
AATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATC > SRR4302535.2733835/1‑94 (MQ=60)
ATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCG < SRR4302535.4704799/94‑1 (MQ=60)
ATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCG < SRR4302535.2066142/94‑1 (MQ=60)
ATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCG > SRR4302535.259691/1‑94 (MQ=60)
ATCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCG > SRR4302535.3861268/1‑94 (MQ=60)
TCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGT > SRR4302535.4673445/1‑94 (MQ=60)
TCCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGT > SRR4302535.457165/1‑94 (MQ=60)
CCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTG < SRR4302535.2233773/94‑1 (MQ=60)
CCGACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTG < SRR4302535.4522448/94‑1 (MQ=60)
CGACTTTTGGCGCTGATATCTACTGGCGTTGGCGCGTATGTGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACCGTTATCGTGA > SRR4302535.4045548/1‑94 (MQ=60)
GACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGAT < SRR4302535.2740062/94‑1 (MQ=60)
ACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATG > SRR4302535.2488884/1‑94 (MQ=60)
ACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATG < SRR4302535.4359533/94‑1 (MQ=60)
ACTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATG > SRR4302535.4237867/1‑94 (MQ=60)
|
CAGGCCAATGCCGACGCGGTGGTGAAGGTGATGCTCGATCCTAAAGAGTTCAACACCTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATG > NC_000913/3228521‑3228707
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
