Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,237,258 |
A→G |
intergenic (+71/‑326) |
ygjT → / → ygjU |
putative transport protein/putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,237,258 | 0 | A | G | 100.0%
| 479.4
/ NA
| 161 | intergenic (+71/‑326) | ygjT/ygjU | putative transport protein/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (86/75); total (86/75) |
Only 100 of 170 total aligned reads displayed.
AAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑CCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGACTGAC > NC_000913/3237170‑3237345
|
aaGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAgggg < 2:1337911/93‑1 (MQ=255)
agcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGgggg < 2:3671634/93‑1 (MQ=255)
agcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGgggg > 2:2525238/1‑93 (MQ=255)
gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGt > 2:4169946/1‑93 (MQ=255)
gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGt < 2:2339310/93‑1 (MQ=255)
gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCgg > 1:3428434/1‑93 (MQ=255)
cGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCggg > 1:1996204/1‑93 (MQ=255)
gggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGt < 1:762792/93‑1 (MQ=255)
gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGa > 2:4366574/1‑93 (MQ=255)
gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGa < 1:4105053/93‑1 (MQ=255)
gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGa > 1:3013331/1‑93 (MQ=255)
tGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAg < 2:971537/93‑1 (MQ=255)
gATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAggg < 1:1073197/93‑1 (MQ=255)
gATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAggg > 1:3709509/1‑93 (MQ=255)
tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAgggga > 2:2827224/1‑91 (MQ=255)
tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTa > 1:677150/1‑93 (MQ=38)
tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTa > 1:3600691/1‑93 (MQ=38)
tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTa > 1:2069932/1‑93 (MQ=38)
tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGGGAGGGTa > 1:3293078/1‑93 (MQ=255)
aTTTTTAATCTGCCTAAGCCGTGTACTCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAAt < 2:3795048/93‑1 (MQ=255)
tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAAtttt > 2:2458259/1‑93 (MQ=38)
tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAAtttt < 1:4191695/93‑1 (MQ=255)
ttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAAttttt > 1:252103/1‑93 (MQ=38)
tAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTc < 1:2325028/93‑1 (MQ=38)
tAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTc > 2:3368869/1‑93 (MQ=38)
aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGc > 2:477637/1‑93 (MQ=38)
aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGc > 1:1484855/1‑93 (MQ=38)
tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCa < 2:342694/93‑1 (MQ=37)
cTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCAc < 1:2845765/93‑1 (MQ=38)
tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCAcc > 2:1776741/1‑93 (MQ=38)
tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCAcc > 1:4313680/1‑93 (MQ=38)
tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCAcc > 1:2601423/1‑93 (MQ=38)
gCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCg > 2:4002680/1‑93 (MQ=38)
gCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCg < 1:4149294/93‑1 (MQ=38)
cTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt < 2:561710/93‑1 (MQ=38)
cTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt < 1:3982663/93‑1 (MQ=255)
cTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt > 2:2897040/1‑93 (MQ=38)
tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg > 1:3151706/1‑93 (MQ=38)
tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg > 1:764676/1‑93 (MQ=38)
tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg > 1:2591041/1‑93 (MQ=38)
gCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTg < 2:2922445/93‑1 (MQ=38)
tgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCt > 1:3846761/1‑93 (MQ=37)
tgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCt > 2:2621600/1‑93 (MQ=37)
tgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCt < 1:272059/93‑1 (MQ=38)
gtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTg < 1:2499581/93‑1 (MQ=38)
aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑tt > 1:1614813/1‑93 (MQ=37)
aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑tt > 1:3205416/1‑93 (MQ=37)
aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑tt < 2:3339304/93‑1 (MQ=38)
aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑tt > 1:4461096/1‑93 (MQ=37)
aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑tt > 1:3348101/1‑93 (MQ=37)
cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTc > 1:2650788/1‑93 (MQ=37)
cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTc < 2:2808721/93‑1 (MQ=38)
cTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTtcc > 2:3206782/1‑93 (MQ=25)
cTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTccc > 2:1095170/1‑93 (MQ=37)
cTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTccc > 1:212099/1‑93 (MQ=37)
cTGTCATTAACATGAGCACCGTGTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTccc < 1:1692416/93‑1 (MQ=37)
tGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTcccc < 2:3524666/93‑1 (MQ=37)
tGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTcccc > 2:3085465/1‑93 (MQ=37)
tGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTcccc > 2:3359920/1‑93 (MQ=37)
tGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑CTaccc > 1:852507/1‑93 (MQ=25)
gTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCt > 1:4522276/1‑93 (MQ=37)
aaCATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTTCCCCCAcccc > 1:154818/1‑92 (MQ=25)
aCATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTa > 1:4338666/1‑93 (MQ=21)
aCATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTa < 1:4276925/93‑1 (MQ=21)
cATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTcccccccccccca > 1:973283/1‑90 (MQ=25)
cATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTaa < 1:3042541/93‑1 (MQ=21)
aTGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑c < 2:3531456/93‑1 (MQ=21)
tGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑cc > 1:525168/1‑93 (MQ=21)
gAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑ccc > 1:3838206/1‑93 (MQ=21)
gAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑ccc > 2:1538983/1‑93 (MQ=21)
gCACCGTTTTCTCCCTCTCCCTGCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCctc < 2:3958926/93‑1 (MQ=18)
aCCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCtctc < 1:920949/93‑1 (MQ=18)
gTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTcccc > 1:2278787/1‑93 (MQ=18)
gTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTcccc > 2:2387873/1‑93 (MQ=18)
ttttCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCa < 2:1641273/93‑1 (MQ=17)
tctccctctcccTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAAc < 2:4530669/89‑1 (MQ=18)
ctccctctcccTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACg < 1:3666625/90‑1 (MQ=18)
tccctctcccTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTCA‑CCCTCTCCCCCAAcag > 2:1201163/3‑91 (MQ=18)
ccctctcccTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCCCCCCCCCAACCCCTCCCCCCACACg > 2:3614831/2‑93 (MQ=16)
ccctctcccTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACggg < 1:1724813/92‑1 (MQ=18)
cctctcccTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACgggg < 1:2767414/93‑1 (MQ=255)
tctccctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCg > 2:4458378/5‑93 (MQ=255)
tctccctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCg < 2:3686013/89‑1 (MQ=255)
ctccctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGa < 1:1910430/90‑1 (MQ=255)
tccctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAg < 1:1323012/91‑1 (MQ=255)
ccctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCCCCCTAA‑CCCTCTCCCCAAACGGGGCGAgg < 1:3216741/92‑1 (MQ=255)
ccctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAgg < 2:1805604/92‑1 (MQ=255)
cctTCCAGGGAGGGGGTCGGGGTGAGGTTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAggg < 2:41067/93‑1 (MQ=255)
cctGCCAGGGAGGGGGTCGGGGTGAGGGGAATTTTTCGCACCGATGCTGGCCTG‑TGCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAggg < 2:1658176/93‑1 (MQ=21)
ctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCCTA‑CCCTCTCCCCCAACTGGGGTAgggg > 2:2093029/1‑93 (MQ=18)
tCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGTGGCGAGGGGAc < 2:2947597/93‑1 (MQ=255)
tCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGAc < 2:2024126/93‑1 (MQ=255)
tCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGAc < 1:3039439/93‑1 (MQ=255)
tCCAGGGAGGGGGTCGGGGGGAGGGTAATTTTACGCGCCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGAc < 1:3349895/93‑1 (MQ=18)
tCCAGGGAGGGGGCCGGGGTGAGGGTAATTTCTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAC‑CCCTCTCCCCAAACGGGGCGAGGGGAc < 1:4085173/93‑1 (MQ=18)
agggagggGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGACTGa < 1:3321814/93‑1 (MQ=255)
gggAGGGGGTCGGGGTGAGGGTAATTTTTCGCTCCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGACTGAc < 2:698113/93‑1 (MQ=255)
gggAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTTCCCTCACCCTAA‑ACCCCTCCCCCAACGGGGCGGGGGGGCTGAc > 2:3004153/1‑93 (MQ=255)
gggAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTTCCCCCCCCCCCA‑CCCCCTCCCCCAACCCGGCGAGGGGGGTGAc > 1:1079884/1‑93 (MQ=255)
gggAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGACTGAc < 2:1421496/93‑1 (MQ=255)
|
AAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑CCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGACTGAC > NC_000913/3237170‑3237345
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑T‑CCTCT‑CCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGGGGACTGACCGAGT > NC_000913/3237167‑3237350
|
GATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGG < SRR4302535.118777/94‑1 (MQ=60)
GATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGG < SRR4302535.1824079/94‑1 (MQ=60)
ATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGG < SRR4302535.4437141/94‑1 (MQ=60)
ATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGG < SRR4302535.3377451/94‑1 (MQ=60)
ATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGG < SRR4302535.302604/94‑1 (MQ=60)
AAGCAGCGGGGTGGTTAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCGCCGTTTTCAC‑CCTCTCCCTTCCAGGGAGGGGG < SRR4302535.4047002/94‑1 (MQ=60)
GCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTGACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTC > SRR4302535.2705065/1‑94 (MQ=60)
AGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGG > SRR4302535.3452265/1‑94 (MQ=60)
GCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGG > SRR4302535.2010576/1‑94 (MQ=60)
GCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGG < SRR4302535.2634646/94‑1 (MQ=60)
GGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGT < SRR4302535.3984988/94‑1 (MQ=60)
GGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTG < SRR4302535.768168/94‑1 (MQ=60)
GGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGA > SRR4302535.3034447/1‑94 (MQ=60)
GTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAG < SRR4302535.4133158/94‑1 (MQ=60)
TGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGG < SRR4302535.871068/94‑1 (MQ=60)
GGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCATCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGG < SRR4302535.2530346/94‑1 (MQ=60)
GGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGG > SRR4302535.3735200/1‑94 (MQ=60)
GATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGT < SRR4302535.1080827/94‑1 (MQ=60)
ATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTA > SRR4302535.3625676/1‑94 (MQ=60)
ATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTA > SRR4302535.4122185/1‑94 (MQ=60)
ATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTA > SRR4302535.2084853/1‑94 (MQ=60)
ATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTA > SRR4302535.681884/1‑94 (MQ=60)
ATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGGGAGGGTA > SRR4302535.3315974/1‑94 (MQ=60)
ATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGAGAGGGTA > SRR4302535.2149346/1‑94 (MQ=60)
ATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATT > SRR4302535.3360443/1‑94 (MQ=60)
ATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATT < SRR4302535.304789/94‑1 (MQ=60)
TTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTT < SRR4302535.729681/94‑1 (MQ=60)
TTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTT < SRR4302535.4220380/94‑1 (MQ=60)
TTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTT > SRR4302535.253839/1‑94 (MQ=60)
TAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCG < SRR4302535.2341662/94‑1 (MQ=60)
TAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCG > SRR4302535.1591225/1‑94 (MQ=60)
TAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCG < SRR4302535.3442101/94‑1 (MQ=60)
TAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCG > SRR4302535.3308976/1‑94 (MQ=60)
AATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGC > SRR4302535.447372/1‑94 (MQ=60)
AATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGC > SRR4302535.1495480/1‑94 (MQ=60)
CTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACC > SRR4302535.2620098/1‑94 (MQ=60)
CTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACC > SRR4302535.4343186/1‑94 (MQ=60)
CTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACC < SRR4302535.2865941/94‑1 (MQ=60)
GCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGA < SRR4302535.4177704/94‑1 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATG > SRR4302535.2609645/1‑94 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATG > SRR4302535.3173609/1‑94 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATG < SRR4302535.1266926/94‑1 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATG < SRR4302535.4009873/94‑1 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATG > SRR4302535.2051868/1‑94 (MQ=60)
CTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATG > SRR4302535.770064/1‑94 (MQ=60)
CGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCC > SRR4302535.792785/1‑94 (MQ=60)
GTGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCT > SRR4302535.3873244/1‑94 (MQ=60)
TGTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG < SRR4302535.273953/94‑1 (MQ=60)
GTACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGT < SRR4302535.2517613/94‑1 (MQ=60)
TACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTT > SRR4302535.1626454/1‑94 (MQ=60)
TACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTT > SRR4302535.4364391/1‑94 (MQ=60)
TACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTT > SRR4302535.3227614/1‑94 (MQ=60)
TACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTT > SRR4302535.4491693/1‑94 (MQ=60)
TACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTT > SRR4302535.3371424/1‑94 (MQ=60)
ACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTC > SRR4302535.2669777/1‑94 (MQ=60)
ACCCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTC < SRR4302535.4635408/94‑1 (MQ=60)
CCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTGCC > SRR4302535.3729126/1‑94 (MQ=60)
CCTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCC > SRR4302535.213557/1‑94 (MQ=60)
CTGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGCTACCC > SRR4302535.858512/1‑94 (MQ=60)
CTGTCATTAACATGAGCACCGTGTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCC < SRR4302535.1704657/94‑1 (MQ=60)
TGTCATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCT > SRR4302535.4553265/1‑94 (MQ=60)
ATTAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTtcccccccc > SRR4302535.376830/1‑85 (MQ=60)
TAACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCCCACCCC > SRR4302535.155905/1‑94 (MQ=60)
AACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTA > SRR4302535.4368335/1‑94 (MQ=60)
ACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCcccccccca > SRR4302535.980190/1‑85 (MQ=60)
ACATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAA < SRR4302535.4306198/94‑1 (MQ=60)
CATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAAC > SRR4302535.2337388/1‑94 (MQ=60)
CATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAAC < SRR4302535.3063860/94‑1 (MQ=60)
ATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTttccccacccccccc > SRR4302535.1654088/1‑79 (MQ=60)
ATGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACC > SRR4302535.528836/1‑94 (MQ=60)
TGAGCACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCC > SRR4302535.3864664/1‑94 (MQ=60)
CACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTC < SRR4302535.2740104/94‑1 (MQ=60)
ACCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCC < SRR4302535.927481/94‑1 (MQ=60)
CCGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCCCCC > SRR4302535.179463/1‑94 (MQ=60)
CGTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCC > SRR4302535.2295063/1‑94 (MQ=60)
GTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCA < SRR4302535.630633/94‑1 (MQ=60)
GTTTTC‑TCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCA > SRR4302535.3157061/1‑94 (MQ=60)
ttctccctctcCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAAC < SRR4302535.173817/83‑1 (MQ=60)
tctctctctcCCTTCCAGGGAGGTGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACG < SRR4302535.4554339/84‑1 (MQ=60)
tctccctctcCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACG < SRR4302535.1667527/84‑1 (MQ=60)
tctccctctcCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACG < SRR4302535.3511407/84‑1 (MQ=60)
ctccctctcCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGG < SRR4302535.3692013/85‑1 (MQ=60)
ccctctcCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTtttctccccccccccccccccccccccccac > SRR4302535.823785/8‑63 (MQ=60)
ccctctcCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGG < SRR4302535.1737287/87‑1 (MQ=60)
ccctctcCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGG < SRR4302535.3317661/87‑1 (MQ=60)
ccctctcCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGG < SRR4302535.2605170/87‑1 (MQ=60)
CCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGC < SRR4302535.2787119/94‑1 (MQ=60)
CCTC‑‑CCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGA < SRR4302535.1976389/94‑1 (MQ=60)
CTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCG < SRR4302535.3814353/94‑1 (MQ=60)
CTC‑‑CCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCTCCTCACCCcctacccctcccccaacgcggcgag > SRR4302535.295885/1‑69 (MQ=60)
CTC‑‑CCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAG < SRR4302535.1924198/94‑1 (MQ=60)
CTC‑‑CCTTCCAGGGAGGGGGTCGGGGGGAGGGTAATTTTTCGCACCGATGCTGGCCTGgttccccccccctcaaccccccccccccccgggcggg > SRR4302535.3466140/1‑57 (MQ=60)
tcCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGG < SRR4302535.3221909/92‑1 (MQ=60)
tcCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGG < SRR4302535.381894/92‑1 (MQ=60)
tcCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGG < SRR4302535.1332454/92‑1 (MQ=60)
tcCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCCCTCCCCAAAAGGGGCGAGG > SRR4302535.1374680/3‑94 (MQ=60)
C‑CCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTtccccccccccccccccccccccccaccaggcgcggg > SRR4302535.116243/1‑57 (MQ=60)
C‑CCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCCCCCTAACCCTCTCCCCAAACGGGGCGAGGG < SRR4302535.3239023/94‑1 (MQ=60)
C‑CCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGGG < SRR4302535.4201997/94‑1 (MQ=60)
CCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGGGG < SRR4302535.4256302/94‑1 (MQ=60)
TCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGGGGACT < SRR4302535.3060726/94‑1 (MQ=60)
TCCAGGGAGGGGGTCGGGGGGAGGGTAATTTTACGCGCCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGGGGACT < SRR4302535.3373229/94‑1 (MQ=60)
TCCAGGGAGGGGGCCGGGGTGAGGGTAATTTCTCGCACCGATGCTGGCCTGTTCCCCTCACCCTACCCCTCTCCCCAAACGGGGCGAGGGGACT < SRR4302535.4113121/94‑1 (MQ=60)
AGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTtcccccccccccaccccctcccccaacccggcgaggggggtgac > SRR4302535.1087568/1‑50 (MQ=60)
AGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGGGGACTGAC < SRR4302535.3344925/94‑1 (MQ=60)
GGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCTCCCCAACCCTCTCCCCcaaaggggggagggggccgacccagc > SRR4302535.4369949/1‑68 (MQ=60)
GGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGGGGACTGACCGAGT < SRR4302535.2737764/94‑1 (MQ=60)
GGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGGGGACTGACCGAGT < SRR4302535.3465472/94‑1 (MQ=60)
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GATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTC‑T‑CCTCT‑CCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCACCCTAACCCTCTCCCCAAACGGGGCGAGGGGACTGACCGAGT > NC_000913/3237167‑3237350
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
