Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,339,701	C→T	G265G (GGC→GGT)	yrbH →	putative isomerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,339,701	0	C	T	99.6%	851.6 / ‑5.4	250	G265G (GGC→GGT)	yrbH	putative isomerase
Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (136/112); total (138/112)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.43e-01

Only 100 of 263 total aligned reads displayed.

AAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAA  >  NC_000913/3339611‑3339790

aaaTCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGgtgt                                                                                         <  2:741114/93‑1 (MQ=255)

aaaTCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGgtgt                                                                                         >  1:2486124/1‑93 (MQ=255)

 aaTCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGtgtg                                                                                        <  2:2172611/93‑1 (MQ=255)

  aTCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTgg                                                                                       >  1:3344097/1‑93 (MQ=255)

   tCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGa                                                                                      <  1:169687/93‑1 (MQ=255)

   tCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGa                                                                                      <  1:1831525/93‑1 (MQ=255)

   tCTTAGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGa                                                                                      <  2:1600179/93‑1 (MQ=255)

     ttGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATg                                                                                    >  1:2699204/1‑93 (MQ=255)

     ttGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATg                                                                                    >  1:2017034/1‑93 (MQ=255)

       ggTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGtt                                                                                  >  1:3599885/1‑93 (MQ=255)

       ggTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGtt                                                                                  <  2:4605172/93‑1 (MQ=255)

        gTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTc                                                                                 <  1:1158266/93‑1 (MQ=255)

         tATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCg                                                                                >  1:3822039/1‑93 (MQ=255)

         tATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCg                                                                                >  2:4355524/1‑93 (MQ=255)

           tGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTc                                                                              <  1:1889274/93‑1 (MQ=255)

           tGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTc                                                                              >  2:282658/1‑93 (MQ=255)

             aCTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAg                                                                            >  1:3971139/1‑93 (MQ=255)

              cTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGt                                                                           <  1:2332244/93‑1 (MQ=255)

              cTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGt                                                                           >  1:2573370/1‑93 (MQ=255)

              cTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGt                                                                           >  1:597562/1‑93 (MQ=255)

               tGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGtt                                                                          >  1:142183/1‑93 (MQ=255)

               tGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGtt                                                                          >  2:1338881/1‑93 (MQ=255)

                gTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTa                                                                         >  1:2210729/1‑93 (MQ=255)

                gTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTa                                                                         >  2:466379/1‑93 (MQ=255)

                gTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTa                                                                         <  1:4675471/93‑1 (MQ=255)

                 tCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTaa                                                                        <  2:3216409/93‑1 (MQ=255)

                  cATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAg                                                                       <  1:1818757/93‑1 (MQ=255)

                  cATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAg                                                                       >  1:3005311/1‑93 (MQ=255)

                   aTTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGt                                                                      <  2:2270273/93‑1 (MQ=255)

                   aTTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGt                                                                      >  1:1200801/1‑93 (MQ=255)

                   aTTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGt                                                                      >  1:4395469/1‑93 (MQ=255)

                    tttGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTa                                                                     >  1:2395612/1‑93 (MQ=255)

                    tttGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTa                                                                     <  1:3635410/93‑1 (MQ=255)

                    tttGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTa                                                                     >  1:1279928/1‑93 (MQ=255)

                    tttGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTa                                                                     >  2:2402460/1‑93 (MQ=255)

                      tGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTAtt                                                                   <  1:370606/93‑1 (MQ=255)

                      tGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTAtt                                                                   <  1:4215861/93‑1 (MQ=255)

                      tGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTAtt                                                                   <  2:1774551/93‑1 (MQ=255)

                       gCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTg                                                                  <  1:4355177/93‑1 (MQ=255)

                       gCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTg                                                                  >  1:1042860/1‑93 (MQ=255)

                         gATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTCCGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGcc                                                                <  1:4083651/93‑1 (MQ=255)

                         gATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGcc                                                                >  2:2174396/1‑93 (MQ=255)

                         gATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGcc                                                                >  2:4152577/1‑93 (MQ=255)

                          aTGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCg                                                               >  2:1879511/1‑93 (MQ=255)

                          aTGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCg                                                               >  1:2946536/1‑93 (MQ=255)

                           tGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGa                                                              <  2:167443/93‑1 (MQ=255)

                           tGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGa                                                              >  2:3701369/1‑93 (MQ=255)

                           tGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGa                                                              <  2:3904997/93‑1 (MQ=255)

                            gACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGAt                                                             >  2:3679368/1‑93 (MQ=255)

                            gACAATATGATGATTGAAGGCATCTTTACCGACCGAGATTTACGCCGTGTCTTCGGTATGCGCGTGGATGTTCTTCAGTTAAGTATTGCCCAt                                                             >  2:2838290/1‑93 (MQ=255)

                             aCAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGAtg                                                            >  2:44578/1‑93 (MQ=255)

                                atatGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGtga                                                         >  1:1020758/1‑93 (MQ=255)

                                atatGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGtga                                                         >  1:3439934/1‑93 (MQ=255)

                                atatGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGAATTGCCGATGtga                                                         >  1:4314874/1‑93 (MQ=255)

                                 tatGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGtgat                                                        >  2:4322500/1‑93 (MQ=255)

                                 tatGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGtgat                                                        >  2:602972/1‑93 (MQ=255)

                                   tgatgaTTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGtgatga                                                      <  2:4520045/93‑1 (MQ=255)

                                   tgatgaTTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGtgatga                                                      <  2:1039167/93‑1 (MQ=255)

                                   tgatgaTTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGtgatga                                                      >  2:3819418/1‑93 (MQ=255)

                                   tgatgaTTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGtgatga                                                      <  2:185182/93‑1 (MQ=255)

                                   agatgatTGAAGGCATCTTTACCGACGGTGATTTCCGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGtgatga                                                      <  2:3535745/92‑1 (MQ=255)

                                    gatgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGAc                                                     <  2:2435488/93‑1 (MQ=255)

                                    gatgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGAc                                                     >  2:1404549/1‑93 (MQ=255)

                                    gatgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGAc                                                     <  1:1508326/93‑1 (MQ=255)

                                    gatgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGACGATGtgatgcc                                                     >  1:349409/1‑91 (MQ=255)

                                      tgatTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGc                                                   <  2:2474930/93‑1 (MQ=255)

                                         ttGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCgg                                                >  2:1539115/1‑93 (MQ=255)

                                          tGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCggg                                               <  2:2138248/93‑1 (MQ=255)

                                           gAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCgggg                                              >  2:937279/1‑93 (MQ=255)

                                            aaGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCggggg                                             <  2:3405846/93‑1 (MQ=255)

                                            aaGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCggggg                                             >  2:301083/1‑93 (MQ=255)

                                            aaGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCggggg                                             >  1:3849512/1‑93 (MQ=255)

                                             aGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCgggggg                                            >  2:2338973/1‑93 (MQ=255)

                                              ggCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGa                                           >  2:3077865/1‑93 (MQ=255)

                                              ggCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACACCGGGGGGa                                           <  1:2312386/93‑1 (MQ=255)

                                               gCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGaa                                          >  1:3096224/1‑93 (MQ=255)

                                                 aTCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATa                                        <  1:2232143/93‑1 (MQ=255)

                                                  tCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATAc                                       >  1:2905747/1‑93 (MQ=255)

                                                  tCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATAc                                       >  2:4404044/1‑93 (MQ=255)

                                                   cTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACg                                      >  1:755002/1‑93 (MQ=255)

                                                     ttACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGACGACGCCGGGGGGAATACgtg                                    <  2:2667672/93‑1 (MQ=255)

                                                          gACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTgcgc                               >  2:2901907/1‑93 (MQ=255)

                                                             ggTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCt                            >  2:196810/1‑93 (MQ=255)

                                                                 aTTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCa                        >  1:4121316/1‑93 (MQ=255)

                                                                 aTTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCa                        >  1:2130409/1‑93 (MQ=255)

                                                                 aTTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCa                        >  1:2864855/1‑93 (MQ=255)

                                                                 aTTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCa                        <  1:1919449/93‑1 (MQ=255)

                                                                  tttACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGCATACGTGTGCGCCCTGGCAt                       >  1:2284758/1‑93 (MQ=255)

                                                                  tttACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCAt                       >  1:2550086/1‑93 (MQ=255)

                                                                   ttACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCAtt                      >  2:4215137/1‑93 (MQ=255)

                                                                      cGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTg                   <  1:1677223/93‑1 (MQ=255)

                                                                         cGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGcc                <  1:3040615/93‑1 (MQ=255)

                                                                           tgtCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGt              <  2:1183644/93‑1 (MQ=255)

                                                                             tCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTg            >  1:1955566/1‑93 (MQ=255)

                                                                               ttCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAg          <  2:455548/93‑1 (MQ=255)

                                                                               ttCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGACGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAg          <  1:1749427/93‑1 (MQ=255)

                                                                                  gATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCa       >  1:4598117/1‑93 (MQ=255)

                                                                                   atatGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCAc      >  1:645578/1‑93 (MQ=255)

                                                                                     atGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTg    <  2:172829/93‑1 (MQ=255)

                                                                                       gggTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGaa  >  1:3184271/1‑93 (MQ=255)

AAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAA  >  NC_000913/3339611‑3339790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTT  >  NC_000913/3339608‑3339793

CAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTTGATATGGGT                                                                                              >  SRR4302535.297507/1‑94 (MQ=60)

CAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGT                                                                                              <  SRR4302535.4075240/94‑1 (MQ=60)

CAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGT                                                                                              >  SRR4302535.507021/1‑94 (MQ=60)

CAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGT                                                                                              >  SRR4302535.1994412/1‑94 (MQ=60)

CAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGT                                                                                              <  SRR4302535.1877539/94‑1 (MQ=60)

 AAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTG                                                                                             <  SRR4302535.1542923/94‑1 (MQ=60)

 AAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTG                                                                                             <  SRR4302535.2676153/94‑1 (MQ=60)

 AAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTG                                                                                             >  SRR4302535.4101489/1‑94 (MQ=60)

  AAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGT                                                                                            >  SRR4302535.1839711/1‑94 (MQ=60)

  AAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGT                                                                                            >  SRR4302535.2504049/1‑94 (MQ=60)

    AATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGG                                                                                          >  SRR4302535.3367393/1‑94 (MQ=60)

    AATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGG                                                                                          >  SRR4302535.1173421/1‑94 (MQ=60)

    AATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGG                                                                                          <  SRR4302535.4087169/94‑1 (MQ=60)

     ATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGA                                                                                         <  SRR4302535.4409191/94‑1 (MQ=60)

      TCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGAT                                                                                        >  SRR4302535.2300498/1‑94 (MQ=60)

      TCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGAT                                                                                        <  SRR4302535.170865/94‑1 (MQ=60)

      TCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGAT                                                                                        <  SRR4302535.1844741/94‑1 (MQ=60)

       CTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATG                                                                                       >  SRR4302535.2718494/1‑94 (MQ=60)

       CTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATG                                                                                       >  SRR4302535.2031563/1‑94 (MQ=60)

         TGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTT                                                                                     <  SRR4302535.3736713/94‑1 (MQ=60)

         TGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTT                                                                                     >  SRR4302535.3624867/1‑94 (MQ=60)

         TGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTT                                                                                     <  SRR4302535.182874/94‑1 (MQ=60)

          GGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTC                                                                                    >  SRR4302535.186459/1‑94 (MQ=60)

          GGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTC                                                                                    >  SRR4302535.2956385/1‑94 (MQ=60)

           GTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCG                                                                                   >  SRR4302535.3848406/1‑94 (MQ=60)

           GTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCG                                                                                   >  SRR4302535.103034/1‑94 (MQ=60)

           GTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCG                                                                                   <  SRR4302535.1166547/94‑1 (MQ=60)

             ATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTC                                                                                 >  SRR4302535.3595202/1‑94 (MQ=60)

              TGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCA                                                                                <  SRR4302535.1902882/94‑1 (MQ=60)

               GACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAG                                                                               >  SRR4302535.4138547/1‑94 (MQ=60)

               GACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAG                                                                               >  SRR4302535.3998263/1‑94 (MQ=60)

                ACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGT                                                                              >  SRR4302535.2591866/1‑94 (MQ=60)

                ACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGT                                                                              >  SRR4302535.601744/1‑94 (MQ=60)

                 CTGTCATTTGCTATGTCAATATGATGATTGAATGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTT                                                                             <  SRR4302535.3457295/94‑1 (MQ=60)

                 CTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTT                                                                             <  SRR4302535.2348927/94‑1 (MQ=60)

                 CTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTT                                                                             >  SRR4302535.143178/1‑94 (MQ=60)

                  TGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTA                                                                            >  SRR4302535.2716705/1‑94 (MQ=60)

                  TGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTA                                                                            >  SRR4302535.2226478/1‑94 (MQ=60)

                  TGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTA                                                                            <  SRR4302535.4202613/94‑1 (MQ=60)

                   GTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAA                                                                           <  SRR4302535.4707033/94‑1 (MQ=60)

                    TCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAG                                                                          >  SRR4302535.245728/1‑94 (MQ=60)

                    TCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAG                                                                          >  SRR4302535.3026373/1‑94 (MQ=60)

                     CATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGT                                                                         <  SRR4302535.3305160/94‑1 (MQ=60)

                     CATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGT                                                                         >  SRR4302535.1503566/1‑94 (MQ=60)

                     CATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGT                                                                         >  SRR4302535.1209404/1‑94 (MQ=60)

                     CATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGT                                                                         >  SRR4302535.4425548/1‑94 (MQ=60)

                     CATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGT                                                                         <  SRR4302535.1831901/94‑1 (MQ=60)

                      ATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTA                                                                        >  SRR4302535.4083590/1‑94 (MQ=60)

                      ATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTA                                                                        >  SRR4302535.2412830/1‑94 (MQ=60)

                      ATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTA                                                                        >  SRR4302535.1289065/1‑94 (MQ=60)

                       TTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTAT                                                                       <  SRR4302535.3660602/94‑1 (MQ=60)

                       TTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTAT                                                                       <  SRR4302535.361043/94‑1 (MQ=60)

                       TTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTAT                                                                       <  SRR4302535.2103833/94‑1 (MQ=60)

                        TTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATT                                                                      <  SRR4302535.1258547/94‑1 (MQ=60)

                         TGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTG                                                                     <  SRR4302535.373168/94‑1 (MQ=60)

                         TGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTG                                                                     <  SRR4302535.3005526/94‑1 (MQ=60)

                         TGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTG                                                                     >  SRR4302535.1050253/1‑94 (MQ=60)

                         TGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTG                                                                     <  SRR4302535.4244712/94‑1 (MQ=60)

                          GCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGC                                                                    <  SRR4302535.4384988/94‑1 (MQ=60)

                           CGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCC                                                                   >  SRR4302535.1814509/1‑94 (MQ=60)

                            GATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTCCGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCG                                                                  <  SRR4302535.4111577/94‑1 (MQ=60)

                            GATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCG                                                                  >  SRR4302535.2967242/1‑94 (MQ=60)

                            GATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCG                                                                  >  SRR4302535.1926770/1‑94 (MQ=60)

                              TGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGAT                                                                <  SRR4302535.2554229/94‑1 (MQ=60)

                                ACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGT                                                              <  SRR4302535.1708872/94‑1 (MQ=60)

                                  AATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGA                                                            >  SRR4302535.3463854/1‑94 (MQ=60)

                                  AATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGA                                                            >  SRR4302535.1028011/1‑94 (MQ=60)

                                  AATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGA                                                            >  SRR4302535.2039008/1‑94 (MQ=60)

                                  AATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGAATTGCCGATGTGA                                                            >  SRR4302535.4344390/1‑94 (MQ=60)

                                   ATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTGAGTATTGCCGATGTGAT                                                           <  SRR4302535.122430/94‑1 (MQ=60)

                                   ATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGAT                                                           >  SRR4302535.185234/1‑94 (MQ=60)

                                    TATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATG                                                          >  SRR4302535.3184798/1‑94 (MQ=60)

                                     ATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGA                                                         >  SRR4302535.474470/1‑94 (MQ=60)

                                      TGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGACGATGTGATGCC                                                        >  SRR4302535.351813/1‑94 (MQ=60)

                                      TGATGATTGAAGGAATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGGGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGAC                                                        >  SRR4302535.877817/1‑94 (MQ=60)

                                       GATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACG                                                       <  SRR4302535.1519169/94‑1 (MQ=60)

                                        ATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGC                                                      >  SRR4302535.307097/1‑94 (MQ=60)

                                         TGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCC                                                     >  SRR4302535.2591433/1‑94 (MQ=60)

                                          GATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCG                                                    >  SRR4302535.1147539/1‑94 (MQ=60)

                                          GATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCG                                                    <  SRR4302535.709591/94‑1 (MQ=60)

                                            TTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGG                                                  <  SRR4302535.2339942/94‑1 (MQ=60)

                                             TGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGG                                                 <  SRR4302535.4350889/94‑1 (MQ=60)

                                              GAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGG                                                >  SRR4302535.3876003/1‑94 (MQ=60)

                                              GAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGG                                                <  SRR4302535.4646607/94‑1 (MQ=60)

                                               AAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGG                                               <  SRR4302535.4244321/94‑1 (MQ=60)

                                               AAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGG                                               <  SRR4302535.366922/94‑1 (MQ=60)

                                                 GGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAA                                             >  SRR4302535.3677206/1‑94 (MQ=60)

                                                 GGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAA                                             >  SRR4302535.3117788/1‑94 (MQ=60)

                                                 GGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACACCGGGGGGAA                                             <  SRR4302535.2328939/94‑1 (MQ=60)

                                                   CATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATA                                           >  SRR4302535.2199506/1‑94 (MQ=60)

                                                   CATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATA                                           >  SRR4302535.3376324/1‑94 (MQ=60)

                                                    ATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGCATAC                                          >  SRR4302535.332905/1‑94 (MQ=60)

                                                    ATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATAC                                          <  SRR4302535.2248015/94‑1 (MQ=60)

                                                    ATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATAC                                          >  SRR4302535.1982623/1‑94 (MQ=60)

                                                    ATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATAC                                          >  SRR4302535.2926287/1‑94 (MQ=60)

                                                     TCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACG                                         <  SRR4302535.2234458/94‑1 (MQ=60)

                                                     TCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACG                                         >  SRR4302535.1427141/1‑94 (MQ=60)

                                                     TCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACG                                         >  SRR4302535.760319/1‑94 (MQ=60)

                                                      CTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGT                                        >  SRR4302535.2518089/1‑94 (MQ=60)

                                                       TTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTG                                       >  SRR4302535.1977474/1‑94 (MQ=60)

                                                        TTACCGACGGTAATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGT                                      <  SRR4302535.3897526/94‑1 (MQ=60)

                                                          ACCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGC                                    <  SRR4302535.2946448/94‑1 (MQ=60)

                                                           CCGACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCG                                   <  SRR4302535.2411952/94‑1 (MQ=60)

                                                              ACGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCC                                >  SRR4302535.1584192/1‑94 (MQ=60)

                                                               CGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCT                               >  SRR4302535.4669334/1‑94 (MQ=60)

                                                               CGGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCT                               <  SRR4302535.3773413/94‑1 (MQ=60)

                                                                GGTGATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTG                              >  SRR4302535.4324236/1‑94 (MQ=60)

                                                                   GATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCA                           >  SRR4302535.2885150/1‑94 (MQ=60)

                                                                   GATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCA                           >  SRR4302535.2145768/1‑94 (MQ=60)

                                                                   GATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCA                           >  SRR4302535.4149519/1‑94 (MQ=60)

                                                                    ATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGCATACGTGTGCGCCCTGGCAT                          >  SRR4302535.2301078/1‑94 (MQ=60)

                                                                    ATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCAT                          <  SRR4302535.1933284/94‑1 (MQ=60)

                                                                    ATTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCAT                          >  SRR4302535.2568443/1‑94 (MQ=60)

                                                                     TTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATT                         <  SRR4302535.1548911/94‑1 (MQ=60)

                                                                     TTTACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGCGCGCCCTCGCATT                         >  SRR4302535.798860/1‑94 (MQ=60)

                                                                        ACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTG                      <  SRR4302535.753506/94‑1 (MQ=60)

                                                                        ACGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTG                      <  SRR4302535.2324676/94‑1 (MQ=60)

                                                                         CGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGG                     <  SRR4302535.3990414/94‑1 (MQ=60)

                                                                         CGCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGG                     <  SRR4302535.1689368/94‑1 (MQ=60)

                                                                          GCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGC                    >  SRR4302535.1691588/1‑94 (MQ=60)

                                                                          GCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGC                    <  SRR4302535.596094/94‑1 (MQ=60)

                                                                          GCCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGC                    >  SRR4302535.3039287/1‑94 (MQ=60)

                                                                           CCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCC                   >  SRR4302535.385951/1‑94 (MQ=60)

                                                                           CCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCC                   <  SRR4302535.1963287/94‑1 (MQ=60)

                                                                           CCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCC                   <  SRR4302535.3485448/94‑1 (MQ=60)

                                                                           CCGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGAGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCC                   >  SRR4302535.2703151/1‑94 (MQ=60)

                                                                            TGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCG                  <  SRR4302535.2897101/94‑1 (MQ=60)

                                                                            CGTGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCG                  <  SRR4302535.3061915/94‑1 (MQ=60)

                                                                              TGTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGGCCTGGCATTCTGGCCGTT                >  SRR4302535.2861680/1‑94 (MQ=60)

                                                                               GTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTG               >  SRR4302535.1969644/1‑94 (MQ=60)

                                                                               GTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTG               >  SRR4302535.4581046/1‑94 (MQ=60)

                                                                               GTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTG               <  SRR4302535.2329566/94‑1 (MQ=60)

                                                                               GTCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTG               >  SRR4302535.231293/1‑94 (MQ=60)

                                                                                TCTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGA              >  SRR4302535.642964/1‑94 (MQ=60)

                                                                                 CTTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAG             <  SRR4302535.1909485/94‑1 (MQ=60)

                                                                                  TTCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGACGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGG            <  SRR4302535.1762081/94‑1 (MQ=60)

                                                                                   TCGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGC           <  SRR4302535.1321480/94‑1 (MQ=60)

                                                                                    CGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCA          <  SRR4302535.1090900/94‑1 (MQ=60)

                                                                                    CGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCA          <  SRR4302535.1731835/94‑1 (MQ=60)

                                                                                    CGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCA          <  SRR4302535.3103870/94‑1 (MQ=60)

                                                                                    CGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCA          >  SRR4302535.4629398/1‑94 (MQ=60)

                                                                                    CGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCA          >  SRR4302535.3642403/1‑94 (MQ=60)

                                                                                    CGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCA          >  SRR4302535.2231215/1‑94 (MQ=60)

                                                                                    CGATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCA          >  SRR4302535.4376983/1‑94 (MQ=60)

                                                                                     GATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCAC         >  SRR4302535.650083/1‑94 (MQ=60)

                                                                                     GATATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCAC         <  SRR4302535.2486163/94‑1 (MQ=60)

                                                                                       TATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTG       >  SRR4302535.4410303/1‑94 (MQ=60)

                                                                                        ATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGA      <  SRR4302535.3056219/94‑1 (MQ=60)

                                                                                        ATGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGA      >  SRR4302535.2862733/1‑94 (MQ=60)

                                                                                         TGGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAA     >  SRR4302535.3206283/1‑94 (MQ=60)

                                                                                          GGGTGTGTATTTTCGTCAGTTAAGTATTGCCAATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAAC    <  SRR4302535.2368311/94‑1 (MQ=60)

                                                                                          GGGTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAAC    >  SRR4302535.1103235/1‑94 (MQ=60)

                                                                                            GTGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTA  >  SRR4302535.2672505/1‑94 (MQ=60)

CAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTT  >  NC_000913/3339608‑3339793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`