Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,340,190	A→G	T93A (ACT→GCT)	yrbI →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,340,190	0	A	G	99.6%	730.9 / NA	231	T93A (ACT→GCT)	yrbI	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (104/126); minor base T (0/1); total (104/127)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 245 total aligned reads displayed.

CGTTGTGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCACTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTAT  >  NC_000913/3340100‑3340279

  ttGTGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTGAACTGGTAGAAGATCGTTGTGGCACATTGGGGGtcgctca                                                                                       >  1:4181892/1‑93 (MQ=255)

   tgtgCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGAtcgctcac                                                                                      <  1:4311719/93‑1 (MQ=255)

    gtgCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATcgctcact                                                                                     >  1:2264276/1‑93 (MQ=255)

     tgCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACtt                                                                                    <  2:3277569/93‑1 (MQ=255)

      gcgcTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTg                                                                                   <  1:3892664/93‑1 (MQ=255)

        gcTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTa                                                                                 <  2:3831655/93‑1 (MQ=255)

         cTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTAt                                                                                <  1:652984/93‑1 (MQ=255)

          tCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATc                                                                               <  1:1392063/93‑1 (MQ=255)

          tCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATc                                                                               >  1:2043082/1‑93 (MQ=255)

           cACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCa                                                                              <  1:4473906/93‑1 (MQ=255)

            aCCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGCATCAg                                                                             >  1:1061451/1‑93 (MQ=255)

             ccTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAgg                                                                            >  1:479910/1‑93 (MQ=255)

             ccTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAgg                                                                            >  1:1793693/1‑93 (MQ=255)

              ctctGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAggg                                                                           <  2:710164/93‑1 (MQ=255)

              ctctGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAggg                                                                           <  1:703344/93‑1 (MQ=255)

              ctctGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAggg                                                                           >  2:1531165/1‑93 (MQ=255)

              ctctGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAggg                                                                           <  2:2520330/93‑1 (MQ=255)

               tctGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAgggg                                                                          >  1:135734/1‑93 (MQ=255)

                 tGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCa                                                                        <  2:4210997/93‑1 (MQ=255)

                 tGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCa                                                                        >  1:2720939/1‑93 (MQ=255)

                 tGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCa                                                                        >  2:1372233/1‑93 (MQ=255)

                   atatTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGt                                                                      >  2:2145557/1‑93 (MQ=255)

                    tatTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTc                                                                     >  2:3522532/1‑93 (MQ=255)

                       tGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCATGGGCAGTcaaa                                                                  <  2:1453391/93‑1 (MQ=255)

                        gAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTcaaac                                                                 <  2:3406531/93‑1 (MQ=255)

                         aaGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTcaaaca                                                                <  2:1489469/93‑1 (MQ=255)

                            tCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCaaacaaac                                                             <  2:4080859/93‑1 (MQ=255)

                            tCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCaaacaaac                                                             <  2:2754495/93‑1 (MQ=255)

                            tCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCaaacaaac                                                             <  2:3094417/93‑1 (MQ=255)

                             cGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACt                                                            <  1:1853367/93‑1 (MQ=255)

                              gCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGTGGATCGCTCAATTGTATCAGGGGCAGTCAAACAAACTg                                                           >  1:3964980/1‑93 (MQ=255)

                               cTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGa                                                          >  2:2223840/1‑93 (MQ=255)

                                tATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATTGCTCACTTGTATCAGGGGCAGTCAAACAAACTGAt                                                         <  2:196536/93‑1 (MQ=255)

                                tATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGac                                                         <  2:543468/93‑2 (MQ=255)

                                tATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGAt                                                         <  1:955219/93‑1 (MQ=255)

                                tATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGAt                                                         <  1:2195565/93‑1 (MQ=255)

                                tATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGAt                                                         >  1:4116235/1‑93 (MQ=255)

                                 aTCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATc                                                        <  2:3311728/93‑1 (MQ=255)

                                 aTCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATc                                                        <  1:3398800/93‑1 (MQ=255)

                                   cATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGc                                                      <  1:3338385/93‑1 (MQ=255)

                                    aTTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGcc                                                     <  2:1650500/93‑1 (MQ=255)

                                        ccGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTa                                                 <  2:904383/93‑1 (MQ=255)

                                         cGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAg                                                >  1:1827074/1‑93 (MQ=255)

                                         cGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAg                                                <  2:2349099/93‑1 (MQ=255)

                                           ggCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCg                                              >  1:3005478/1‑93 (MQ=255)

                                            gCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGa                                             >  2:2812073/1‑93 (MQ=255)

                                               aaaGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATct                                          <  2:3481020/93‑1 (MQ=255)

                                               aaaGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATct                                          <  1:1941202/93‑1 (MQ=255)

                                                aaGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATctg                                         >  1:2331698/1‑93 (MQ=255)

                                                 aGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATctgc                                        <  1:2789423/93‑1 (MQ=255)

                                                 aGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATctgc                                        <  1:191845/93‑1 (MQ=255)

                                                 aGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATctgc                                        >  2:4375093/1‑93 (MQ=255)

                                                  ggCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATctgct                                       >  1:1527637/1‑93 (MQ=255)

                                                  ggCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATctgct                                       <  2:1508896/93‑1 (MQ=255)

                                                  ggCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATctgct                                       <  2:434590/93‑1 (MQ=255)

                                                  ggCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATctgcc                                       <  1:4422037/93‑2 (MQ=255)

                                                    cgaaaCTGGTAGAAGAGCGTGTAACCACATTGGGCATCGCTCACTTGTATCAGGGTCAGTCAAACAACCTGATCTGCTTTAGGTATCTGCTgg                                     <  2:1601796/91‑1 (MQ=255)

                                                    cTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTgg                                     <  1:594610/93‑1 (MQ=255)

                                                    cTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTgg                                     >  1:2900242/1‑93 (MQ=255)

                                                    cTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTgg                                     >  1:303308/1‑93 (MQ=255)

                                                      aaaCTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGaa                                   <  2:4194307/93‑1 (MQ=255)

                                                      aaaCTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGaa                                   >  1:922413/1‑93 (MQ=255)

                                                       aaCTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGaaa                                  >  2:4513558/1‑93 (MQ=255)

                                                        aCTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGaaaa                                 >  2:461449/1‑93 (MQ=255)

                                                         cTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGaaaaa                                >  1:3716190/1‑93 (MQ=255)

                                                          tGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAAc                               >  2:3055032/1‑93 (MQ=255)

                                                           ggTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACt                              <  2:1238754/93‑1 (MQ=255)

                                                             tAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTgg                            <  1:3645162/93‑1 (MQ=255)

                                                             tAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTgg                            <  2:2706906/93‑1 (MQ=255)

                                                             tAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTgg                            <  1:3874754/93‑1 (MQ=255)

                                                             tAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTgg                            >  1:3478236/1‑93 (MQ=255)

                                                               gaagaTCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCg                          >  1:3188674/1‑93 (MQ=255)

                                                               gaagaTCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCg                          >  2:1631440/1‑93 (MQ=255)

                                                               gaagaTCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCg                          >  2:2874653/1‑93 (MQ=255)

                                                                aagaTCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGa                         <  1:2644443/93‑1 (MQ=255)

                                                                aagaTCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGa                         <  2:2040115/93‑1 (MQ=255)

                                                                 agaTCGTTGTGCCACATAGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACGGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGAt                        <  1:3781048/93‑1 (MQ=255)

                                                                  gaTCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGAtt                       <  1:1240757/93‑1 (MQ=255)

                                                                  gaTCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGAtt                       >  1:3507285/1‑93 (MQ=255)

                                                                  gaTCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGAtt                       >  2:1501057/1‑93 (MQ=255)

                                                                    tCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGc                     >  2:39962/1‑93 (MQ=255)

                                                                      gTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGccc                   >  2:2231850/1‑93 (MQ=255)

                                                                      gTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGccc                   >  1:4551857/1‑93 (MQ=255)

                                                                      gTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGccc                   >  2:684208/1‑93 (MQ=255)

                                                                      gTTGTGCCACATGGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGccc                   <  1:4269472/93‑1 (MQ=255)

                                                                       ttGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGcccc                  <  1:3152158/93‑1 (MQ=255)

                                                                          tgCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGCTTGCCCCGGa               >  1:1895030/1‑93 (MQ=255)

                                                                          tgCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGa               >  1:3939485/1‑93 (MQ=255)

                                                                             cacaTTGGGGTTCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGaaaa            <  2:1029443/93‑1 (MQ=255)

                                                                             cacaTTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATTTGCTGGAAAAACTGGCGATTGCCCCGGaaaa            <  1:3258299/93‑1 (MQ=255)

                                                                             cacaTTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGaaaa            <  1:2413444/93‑1 (MQ=255)

                                                                              acaTTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAAt           <  2:1189072/93‑1 (MQ=255)

                                                                               caTTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGTAAAAtg          <  2:3903583/93‑1 (MQ=255)

                                                                               caTTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGCAAAtg          >  2:4105742/1‑93 (MQ=255)

                                                                               caTTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAAtg          <  2:2469691/93‑1 (MQ=255)

                                                                                 ttGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAAtgtg        <  1:3247475/93‑1 (MQ=255)

                                                                                 ttGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAAtgtg        <  2:3874103/93‑1 (MQ=255)

                                                                                 ttGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAAtgtg        >  1:2184608/1‑93 (MQ=255)

                                                                                   ggggATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAACTGAGGc      >  2:1924085/1‑93 (MQ=255)

                                                                                      gATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTa   <  2:378344/93‑1 (MQ=255)

CGTTGTGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCACTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTAT  >  NC_000913/3340100‑3340279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTCGTTGTGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCACTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTCG  >  NC_000913/3340097‑3340283

ATTCGTTGTGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCG                                                                                               >  SRR4302535.1119609/1‑94 (MQ=60)

ATTCGTTGTGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCG                                                                                               <  SRR4302535.1180819/94‑1 (MQ=60)

ATTCGTTGTGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCG                                                                                               <  SRR4302535.4289134/94‑1 (MQ=60)

ATTCGTTGTGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCG                                                                                               >  SRR4302535.216836/1‑94 (MQ=60)

ATTCGTTGTGCGCTCACCTCTGATATGGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCG                                                                                               >  SRR4302535.4611563/1‑94 (MQ=60)

    GTTGTGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTGAACTGGTAGAAGATCGTTGTGGCACATTGGGGGTCGCTCA                                                                                           >  SRR4302535.4210507/1‑94 (MQ=60)

      TGTGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACT                                                                                         >  SRR4302535.2280409/1‑94 (MQ=60)

      TGTGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACT                                                                                         <  SRR4302535.4341213/94‑1 (MQ=60)

        TGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTG                                                                                       >  SRR4302535.1118260/1‑94 (MQ=60)

         GCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGT                                                                                      <  SRR4302535.3919351/94‑1 (MQ=60)

          CGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTA                                                                                     >  SRR4302535.3706846/1‑94 (MQ=60)

            CTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATC                                                                                   >  SRR4302535.2545536/1‑94 (MQ=60)

            CTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATC                                                                                   <  SRR4302535.657539/94‑1 (MQ=60)

            CTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATC                                                                                   >  SRR4302535.2057801/1‑94 (MQ=60)

             TCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCA                                                                                  <  SRR4302535.1401999/94‑1 (MQ=60)

             TCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCA                                                                                  >  SRR4302535.2278061/1‑94 (MQ=60)

              CACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAG                                                                                 <  SRR4302535.4504605/94‑1 (MQ=60)

              CACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGCATCAG                                                                                 >  SRR4302535.1069009/1‑94 (MQ=60)

               ACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGG                                                                                >  SRR4302535.4564141/1‑94 (MQ=60)

               ACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGG                                                                                >  SRR4302535.1806660/1‑94 (MQ=60)

               ACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGG                                                                                >  SRR4302535.483278/1‑94 (MQ=60)

                 CTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGG                                                                              <  SRR4302535.4072236/94‑1 (MQ=60)

                 CTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGG                                                                              >  SRR4302535.2908327/1‑94 (MQ=60)

                 CTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGG                                                                              >  SRR4302535.136681/1‑94 (MQ=60)

                 CTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGG                                                                              <  SRR4302535.4639370/94‑1 (MQ=60)

                 CTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGG                                                                              <  SRR4302535.708276/94‑1 (MQ=60)

                   CTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCA                                                                            >  SRR4302535.2740376/1‑94 (MQ=60)

                    TGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAG                                                                           >  SRR4302535.2766192/1‑94 (MQ=60)

                     GATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGT                                                                          <  SRR4302535.3313673/94‑1 (MQ=60)

                         TTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCTCTCACTTGTATCAGGGGCAGTCAAA                                                                      <  SRR4302535.860912/94‑1 (MQ=60)

                            AAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAA                                                                   <  SRR4302535.1369417/94‑1 (MQ=60)

                             AGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAA                                                                  >  SRR4302535.3255039/1‑94 (MQ=60)

                                CGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGTGGATCGCTCAATTGTATCAGGGGCAGTCAAACAAACTG                                                               >  SRR4302535.3992066/1‑94 (MQ=60)

                                CGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTG                                                               <  SRR4302535.1866716/94‑1 (MQ=60)

                                  CTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGAT                                                             >  SRR4302535.2140824/1‑94 (MQ=60)

                                  CTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGAT                                                             >  SRR4302535.2210118/1‑94 (MQ=60)

                                  CTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGAT                                                             >  SRR4302535.2317010/1‑94 (MQ=60)

                                  CTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGAT                                                             >  SRR4302535.4144409/1‑94 (MQ=60)

                                   TATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATC                                                            <  SRR4302535.961988/94‑1 (MQ=60)

                                   TATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATC                                                            <  SRR4302535.2211212/94‑1 (MQ=60)

                                    ATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCG                                                           >  SRR4302535.4304212/1‑94 (MQ=60)

                                    ATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCG                                                           <  SRR4302535.3422448/94‑1 (MQ=60)

                                    ATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCG                                                           <  SRR4302535.2406913/94‑1 (MQ=60)

                                     TCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGC                                                          >  SRR4302535.3020793/1‑94 (MQ=60)

                                     TCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGC                                                          <  SRR4302535.645693/94‑1 (MQ=60)

                                      CATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCC                                                         <  SRR4302535.4065770/94‑1 (MQ=60)

                                      CATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCC                                                         >  SRR4302535.3847765/1‑94 (MQ=60)

                                      CATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCC                                                         <  SRR4302535.3361638/94‑1 (MQ=60)

                                       ATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCT                                                        >  SRR4302535.1391765/1‑94 (MQ=60)

                                        TTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTT                                                       <  SRR4302535.3595949/94‑1 (MQ=60)

                                         TACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTT                                                      <  SRR4302535.4375015/94‑1 (MQ=60)

                                         TACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTT                                                      <  SRR4302535.4178965/94‑1 (MQ=60)

                                           CCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAG                                                    <  SRR4302535.4232340/94‑1 (MQ=60)

                                           CCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAG                                                    <  SRR4302535.3183776/94‑1 (MQ=60)

                                           CCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAG                                                    <  SRR4302535.1286245/94‑1 (MQ=60)

                                           CCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAG                                                    >  SRR4302535.1840265/1‑94 (MQ=60)

                                            CGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGC                                                   <  SRR4302535.3313356/94‑1 (MQ=60)

                                             GGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCG                                                  >  SRR4302535.3026540/1‑94 (MQ=60)

                                             GGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCG                                                  >  SRR4302535.3273083/1‑94 (MQ=60)

                                               GCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGAT                                                <  SRR4302535.4583683/94‑1 (MQ=60)

                                               GCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGAT                                                <  SRR4302535.1504619/94‑1 (MQ=60)

                                               GCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGAT                                                <  SRR4302535.3855027/94‑1 (MQ=60)

                                               GCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGAT                                                >  SRR4302535.3523963/1‑94 (MQ=60)

                                               GCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGAT                                                <  SRR4302535.819360/94‑1 (MQ=60)

                                                CGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATC                                               <  SRR4302535.556390/94‑1 (MQ=60)

                                                CGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATC                                               >  SRR4302535.611120/1‑94 (MQ=60)

                                                CGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATC                                               >  SRR4302535.269433/1‑94 (MQ=60)

                                                 GAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCT                                              <  SRR4302535.1894414/94‑1 (MQ=60)

                                                 GAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCT                                              <  SRR4302535.3138681/94‑1 (MQ=60)

                                                 GAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCT                                              <  SRR4302535.3421085/94‑1 (MQ=60)

                                                  AAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTG                                             >  SRR4302535.2348376/1‑94 (MQ=60)

                                                  AAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTG                                             <  SRR4302535.1955188/94‑1 (MQ=60)

                                                    AGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCT                                           <  SRR4302535.3929464/94‑1 (MQ=60)

                                                    AGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCT                                           >  SRR4302535.1538642/1‑94 (MQ=60)

                                                    AGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCT                                           <  SRR4302535.1725129/94‑1 (MQ=60)

                                                    AGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCT                                           <  SRR4302535.2809273/94‑1 (MQ=60)

                                                    AGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCT                                           <  SRR4302535.193170/94‑1 (MQ=60)

                                                     GGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTG                                          >  SRR4302535.985597/1‑94 (MQ=60)

                                                     GGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCCG                                          <  SRR4302535.4452321/94‑1 (MQ=60)

                                                      GCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGG                                         >  SRR4302535.305416/1‑94 (MQ=60)

                                                      GCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGG                                         >  SRR4302535.2920745/1‑94 (MQ=60)

                                                       CTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGA                                        <  SRR4302535.598778/94‑1 (MQ=60)

                                                        TAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAA                                       >  SRR4302535.928951/1‑94 (MQ=60)

                                                           ACTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAA                                    >  SRR4302535.3741934/1‑94 (MQ=60)

                                                            CTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAAC                                   >  SRR4302535.1813888/1‑94 (MQ=60)

                                                            CTGGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAAC                                   >  SRR4302535.3693479/1‑94 (MQ=60)

                                                              GGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTG                                 <  SRR4302535.2269376/94‑1 (MQ=60)

                                                              GGTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTG                                 <  SRR4302535.3213743/94‑1 (MQ=60)

                                                               GTAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGG                                >  SRR4302535.3502405/1‑94 (MQ=60)

                                                                TAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGC                               <  SRR4302535.3670406/94‑1 (MQ=60)

                                                                TAGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGC                               <  SRR4302535.3901377/94‑1 (MQ=60)

                                                                 AGAAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCG                              >  SRR4302535.3210725/1‑94 (MQ=60)

                                                                   AAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGAT                            <  SRR4302535.2663383/94‑1 (MQ=60)

                                                                   AAGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGAT                            >  SRR4302535.3054170/1‑94 (MQ=60)

                                                                    AGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGTGATT                           >  SRR4302535.2026935/1‑94 (MQ=60)

                                                                    AGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATT                           >  SRR4302535.1915850/1‑94 (MQ=60)

                                                                    AGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATT                           >  SRR4302535.2113152/1‑94 (MQ=60)

                                                                    AGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATT                           >  SRR4302535.3531660/1‑94 (MQ=60)

                                                                    AGATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATT                           >  SRR4302535.3431689/1‑94 (MQ=60)

                                                                    AGATCGTTGTGCCACATAGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACGGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATT                           <  SRR4302535.3807144/94‑1 (MQ=60)

                                                                     GATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTG                          <  SRR4302535.1249616/94‑1 (MQ=60)

                                                                      ATCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGC                         >  SRR4302535.4277460/1‑94 (MQ=60)

                                                                       TCGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCC                        >  SRR4302535.672719/1‑94 (MQ=60)

                                                                        CGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAACCAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCC                       >  SRR4302535.2718435/1‑94 (MQ=60)

                                                                        CGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCC                       >  SRR4302535.4582964/1‑94 (MQ=60)

                                                                        CGTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCC                       >  SRR4302535.4454934/1‑94 (MQ=60)

                                                                         GTTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCC                      <  SRR4302535.4495291/94‑1 (MQ=60)

                                                                         GTTGTGCCACATGGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCC                      <  SRR4302535.4298704/94‑1 (MQ=60)

                                                                          TTGTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCG                     <  SRR4302535.3174063/94‑1 (MQ=60)

                                                                            GTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGCTTGCCCCGGA                   >  SRR4302535.1908668/1‑94 (MQ=60)

                                                                            GTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGA                   >  SRR4302535.3966370/1‑94 (MQ=60)

                                                                            GTGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGA                   <  SRR4302535.3932124/94‑1 (MQ=60)

                                                                             TGCCACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAA                  <  SRR4302535.2355134/94‑1 (MQ=60)

                                                                                CACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATTTGCTGGAAAAACTGGCGATTGCCCCGGAAAAT               <  SRR4302535.3280942/94‑1 (MQ=60)

                                                                                CACATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAAT               <  SRR4302535.2430819/94‑1 (MQ=60)

                                                                                  CATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAGAATGG             >  SRR4302535.3916981/1‑94 (MQ=60)

                                                                                  CATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGT             >  SRR4302535.3155598/1‑94 (MQ=60)

                                                                                   ATTGGGGATGGCTCACTTGTATCAGGGGCAGTCAATCAAACTGATCACCTTTAGCGATCTGCTGGAAAAGCTGGCGATTGCCCCGGAAAATGTG            <  SRR4302535.1929368/94‑1 (MQ=60)

                                                                                   ATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTG            <  SRR4302535.1840417/94‑1 (MQ=60)

                                                                                   ATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTG            >  SRR4302535.1779063/1‑94 (MQ=60)

                                                                                   ATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTG            <  SRR4302535.3778564/94‑1 (MQ=60)

                                                                                   ATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTG            >  SRR4302535.2200183/1‑94 (MQ=60)

                                                                                   ATTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTG            <  SRR4302535.184339/94‑1 (MQ=60)

                                                                                    TTGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGG           <  SRR4302535.3270031/94‑1 (MQ=60)

                                                                                     TGGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGC          <  SRR4302535.1934816/94‑1 (MQ=60)

                                                                                      GGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCT         <  SRR4302535.943585/94‑1 (MQ=60)

                                                                                      GGGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCT         <  SRR4302535.3472771/94‑1 (MQ=60)

                                                                                       GGGATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTT        >  SRR4302535.3983919/1‑94 (MQ=60)

                                                                                          ATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATG     <  SRR4302535.2827642/94‑1 (MQ=60)

                                                                                          ATCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATG     >  SRR4302535.3002337/1‑94 (MQ=60)

                                                                                           TCGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGT    <  SRR4302535.1269505/94‑1 (MQ=60)

                                                                                            CGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTC   >  SRR4302535.3420963/1‑94 (MQ=60)

                                                                                            CGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTC   >  SRR4302535.1597940/1‑94 (MQ=60)

                                                                                            CGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTC   <  SRR4302535.3670655/94‑1 (MQ=60)

                                                                                            CGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTC   <  SRR4302535.3988148/94‑1 (MQ=60)

                                                                                            CGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTC   <  SRR4302535.2356456/94‑1 (MQ=60)

                                                                                            CGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTC   <  SRR4302535.2074499/94‑1 (MQ=60)

                                                                                            CGCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTC   >  SRR4302535.1995473/1‑94 (MQ=60)

                                                                                            CGCTCACTTGTATCAGGAGCAGTCAAACACACTGATCGCCTTTAGCGATCTGCTGAAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTC   <  SRR4302535.1926768/94‑1 (MQ=60)

                                                                                             GCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTCG  >  SRR4302535.644418/1‑94 (MQ=60)

                                                                                             GCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTCG  <  SRR4302535.3157992/94‑1 (MQ=60)

                                                                                             GCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTCG  <  SRR4302535.1648756/94‑1 (MQ=60)

                                                                                             GCTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTCG  <  SRR4302535.1358432/94‑1 (MQ=60)

ATTCGTTGTGCGCTCACCTCTGATATTGAAGTCGCTATCATTACCGGGCGAAAGGCTAAACTGGTAGAAGATCGTTGTGCCACATTGGGGATCACTCACTTGTATCAGGGGCAGTCAAACAAACTGATCGCCTTTAGCGATCTGCTGGAAAAACTGGCGATTGCCCCGGAAAATGTGGCTTATGTCG  >  NC_000913/3340097‑3340283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`