Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,410,534 |
(G)5→6 |
coding (569/663 nt) |
envR ← |
putative transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,410,529 | 1 | . | G | 98.4%
| 398.6
/ ‑1.4
| 128 | coding (574/663 nt) | envR | putative transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base G (90/36); total (90/38) |
| Fisher's exact test for biased strand distribution p-value = 8.65e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 185 total aligned reads displayed.
ATTTACATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GC‑GGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCAT > NC_000913/3410438‑3410616
|
tttACATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GC‑gg < 2:553548/93‑1 (MQ=255)
tttACATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GC‑gg > 2:1899323/1‑93 (MQ=255)
ttACATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GC‑ggg < 2:526061/93‑1 (MQ=255)
ttACATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GC‑ggg < 1:4169304/93‑1 (MQ=255)
ttACATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GC‑ggg > 1:2128587/1‑93 (MQ=255)
cATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GC‑gggg‑gg < 2:1743081/93‑2 (MQ=255)
aTGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GC‑gggg‑ggc > 2:4140624/1‑91 (MQ=255)
tGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GC‑gggg‑ggct > 1:1456855/1‑90 (MQ=255)
cacTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGt > 1:1024961/1‑93 (MQ=255)
acTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGtt > 2:2953467/1‑93 (MQ=255)
acTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGtt > 1:1530764/1‑93 (MQ=255)
acTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGtt < 2:4304182/93‑1 (MQ=255)
acTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGtt > 2:1294992/1‑93 (MQ=255)
acTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGtt < 2:2271623/93‑1 (MQ=255)
cTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGttt > 1:2175233/1‑93 (MQ=255)
cTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGttt < 2:4618929/93‑1 (MQ=255)
ttAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTta > 1:98055/1‑93 (MQ=255)
tAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTtat > 2:181577/1‑93 (MQ=255)
aaTTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTtata > 1:729141/1‑93 (MQ=255)
aaTTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTtata > 1:44552/1‑93 (MQ=255)
aaTTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTtata < 1:2475570/93‑1 (MQ=255)
attcattcGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATaa > 2:4677745/1‑93 (MQ=255)
attcattcGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATaa < 1:3822087/93‑1 (MQ=255)
attcattcGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATaa > 1:744132/1‑93 (MQ=255)
attcattcGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATaa < 2:645583/93‑1 (MQ=255)
ttcattcGTTTGATGAGTTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATaaa < 2:287175/93‑1 (MQ=255)
ttcattcGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATaaa > 1:2708781/1‑93 (MQ=255)
tcattcGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAg > 2:2938107/1‑93 (MQ=255)
tcattcGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAg > 2:1975684/1‑93 (MQ=255)
cattcGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGa > 1:2071211/1‑93 (MQ=255)
attcGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGAt < 2:139459/93‑1 (MQ=255)
ttcGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATc < 1:1684617/93‑1 (MQ=255)
cGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCGTGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCAt < 1:777233/93‑1 (MQ=255)
gTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATa > 2:173537/1‑93 (MQ=255)
tttGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATaa > 1:3870381/1‑93 (MQ=255)
tttGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATaa < 1:899727/93‑1 (MQ=255)
ttGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAAc > 1:3198317/1‑93 (MQ=255)
tgatgaATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAAcc < 2:2324185/93‑1 (MQ=255)
gatgaATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAAccc < 1:3151221/93‑1 (MQ=255)
atgaATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCg > 2:3358113/1‑93 (MQ=255)
tgaATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGc > 1:4265737/1‑93 (MQ=255)
aattaattTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCa > 2:410079/1‑93 (MQ=255)
aattaattTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCa > 2:3512398/1‑93 (MQ=255)
attatttGCGTTATTTTTTCATCTGGCATGAACTTTCTTAATCCGTTATCGACA‑A‑GG‑GCGGGGG‑G‑CTTGTTAATAAAGATCATACCCCGCCat < 2:2716791/93‑1 (MQ=255)
attaattTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCat > 1:872467/1‑93 (MQ=255)
ttaattTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCata > 2:453776/1‑93 (MQ=255)
ttaattTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCata < 1:2929679/93‑1 (MQ=255)
ttaattTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCata > 1:3993556/1‑93 (MQ=255)
tgaattTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTCTATAAAGATCATAACCCGCCata < 1:1319140/91‑1 (MQ=255)
taattTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCatat > 1:1763070/1‑93 (MQ=255)
taattTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCatat < 1:582329/93‑1 (MQ=255)
aattTCTTTAGTTTTTCATCGGGAATAAAATTTTTTAAAACGTTATCGACC‑G‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATACCCCGCCATAtt < 2:1826485/93‑1 (MQ=255)
tttCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATAttaa > 1:3754533/1‑91 (MQ=255)
tttCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCa > 1:4320091/1‑93 (MQ=255)
tttCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCa > 1:1885867/1‑93 (MQ=255)
ttCTTTTTGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGCCC‑A‑GA‑GCGGGGG‑G‑TTTGTTTATAAAGATCATACCCCGCCATATTCAt < 2:1385319/93‑1 (MQ=255)
tCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑TTTGTTTATAAAGATCATAACCCGCCATATTCAtt < 1:3406893/93‑1 (MQ=255)
gTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTaa > 1:542565/1‑93 (MQ=255)
ttATTTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATACCCCGCCATATTCATTAAc < 1:1111142/93‑1 (MQ=255)
ttATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAAc > 1:4601176/1‑93 (MQ=255)
tATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAAcc > 1:4008192/1‑93 (MQ=255)
ttGTTTTCATCTGGAATGAACTTTCTTAATACGTTATCGACC‑A‑GA‑GC‑GGGG‑GTCTTTTTTATAAAGATCATAACCCGCCATATTCATTAACCa < 1:2313355/92‑1 (MQ=255)
tGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAg > 2:3152488/1‑93 (MQ=255)
tttttCATCTGGCATGAACATTCTTAATACGTTATCGCCC‑A‑GA‑GCGGGGG‑G‑TTTTTTTATAAAGATCATACCCCGCCATATTCATTAACCAGt < 2:483531/92‑1 (MQ=255)
gTTTTCATCTGGCATAAACATTCTTAATCCGTTATCGACC‑A‑GA‑GCGGGGG‑G‑TTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGt < 1:3567331/93‑1 (MQ=255)
ttCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGtttt > 1:1687012/1‑93 (MQ=255)
cATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGa > 2:1085679/1‑93 (MQ=255)
cATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGa > 2:4212982/1‑93 (MQ=255)
cATCTGGAAAAAACATTCTTAATACGTTATCGACC‑A‑GAGGG‑GGGG‑G‑CTTGTTTAAAAAGATAATACCCCGCCATATTCATTAACCAGTTTTGa < 2:2931027/93‑1 (MQ=255)
aTCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGaa > 1:2240146/1‑93 (MQ=255)
aTCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGaa > 2:4378178/1‑93 (MQ=255)
aTCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGaa > 2:2056699/1‑93 (MQ=255)
aTCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGaa > 2:3186523/1‑93 (MQ=255)
aTCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGaa > 2:339137/1‑93 (MQ=255)
ggaaTGACCATTCTTAATAGTTTTACGACC‑A‑GG‑GC‑GGGGTG‑CTTTTTTATAAAAATCATAACCCGCCATATTCATTAACCAGTTTTGAACAAt < 2:706356/90‑1 (MQ=255)
gCATGAACATTCTTAATACGTTATCGCCC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAAtt < 1:3673225/93‑1 (MQ=255)
gCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAAtt > 2:944878/1‑93 (MQ=255)
cATGAATTTTGTTAACACGTTACCCACC‑C‑GA‑GCGGGGG‑G‑CTTGTTTATAAACATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTc < 2:2458777/93‑1 (MQ=255)
aTGAACATTCTTAATAGTTTATCGACG‑A‑GA‑GC‑GGGG‑GTTTTGTTTAAAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTcc < 2:524915/93‑1 (MQ=255)
tGAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑TTTGTTTATAAAAATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCg < 2:635777/93‑1 (MQ=255)
aaaaCATTTTTAATAATTTAACAACG‑A‑GG‑GC‑GGGG‑GTTTTTTTTATAAAAATCACACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCg < 2:3185709/91‑1 (MQ=255)
gAACATTCTTAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGc > 1:3280399/1‑93 (MQ=255)
tttttAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑TTTGTTTAAAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAg < 1:1034105/90‑1 (MQ=255)
ttCTTAATCCGTTATCGACCGG‑GG‑GG‑GGGG‑G‑CTTGTTTAAAAAGATAATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAg < 2:3570938/93‑1 (MQ=255)
ttCTTAATACTTTATCGACG‑A‑GA‑GC‑GGGGTG‑TTTTTTTATAAAGATCAAACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAg < 2:389653/93‑1 (MQ=255)
ttAATACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCa > 1:2789620/1‑93 (MQ=255)
aTACGTTATCGACC‑A‑GA‑GG‑GGGG‑GTTTTGTTTAAAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCa < 2:3468662/93‑1 (MQ=255)
aTACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCa > 1:1994257/1‑93 (MQ=255)
tACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTTTTTAAAAAAATAATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCAt < 2:3830278/93‑1 (MQ=255)
tACGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCAt > 2:2172805/1‑93 (MQ=255)
cGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTTCGCTGAAGGCACCATCa > 2:4472798/1‑93 (MQ=255)
cGTTATCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCa > 1:2646363/1‑93 (MQ=255)
ttATCGACC‑AGGG‑GG‑GGGG‑G‑CTTGTTTATAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCaat < 2:2245651/93‑1 (MQ=255)
tATCGACC‑A‑GG‑GC‑GGGG‑GTCTTTTTTATAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCaata < 2:2578741/93‑1 (MQ=255)
tCGACC‑A‑GA‑GG‑GGGG‑GTTTTTTTTAAAAAAATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCaataat < 2:3968497/93‑1 (MQ=255)
tCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCaataat > 1:3043921/1‑93 (MQ=255)
tCGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCaataat > 1:4070086/1‑93 (MQ=255)
gcGACC‑A‑GA‑GCGGGGG‑G‑CTTGTTAATAAAGACCAAAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCaataat < 2:2643282/92‑1 (MQ=255)
a‑ga‑gCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAatcat > 1:3585671/1‑93 (MQ=255)
a‑ga‑gCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAatcat > 1:3947175/1‑93 (MQ=255)
|
ATTTACATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACC‑A‑GA‑GC‑GGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCAT > NC_000913/3410438‑3410616
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TACATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GC‑GGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCATCACAACATCT > NC_000913/3410441‑3410626
|
TACATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GC‑GGGG‑G < SRR4302535.3789566/94‑1 (MQ=60)
CATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GC‑GGGG‑Ggc < SRR4302535.4273229/94‑3 (MQ=60)
CATGACACTTAATTCATTCGATTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GC‑GGGG‑Ggc > SRR4302535.2415289/1‑92 (MQ=60)
ATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GC‑GGGG‑Ggct > SRR4302535.1467281/1‑91 (MQ=60)
TGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTT < SRR4302535.1666576/94‑1 (MQ=60)
ACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGT > SRR4302535.1032243/1‑94 (MQ=60)
CACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTT > SRR4302535.1541791/1‑94 (MQ=60)
CACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATGCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTT > SRR4302535.1174757/1‑94 (MQ=60)
CCTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GC‑GGGG‑Ggtttgttt > SRR4302535.3819672/1‑86 (MQ=60)
ACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTT > SRR4302535.2190786/1‑94 (MQ=60)
ACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTT < SRR4302535.3342851/94‑1 (MQ=60)
CTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTA > SRR4302535.98749/1‑94 (MQ=60)
CTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTA > SRR4302535.3938036/1‑94 (MQ=60)
TAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATA > SRR4302535.44889/1‑94 (MQ=60)
TAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATA > SRR4302535.734254/1‑94 (MQ=60)
TAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATA > SRR4302535.4319146/1‑94 (MQ=60)
AATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAA < SRR4302535.1769440/94‑1 (MQ=60)
AATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAA > SRR4302535.749356/1‑94 (MQ=60)
AATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAA < SRR4302535.2493425/94‑1 (MQ=60)
ATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAA > SRR4302535.2728139/1‑94 (MQ=60)
ATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAA < SRR4302535.3848454/94‑1 (MQ=60)
TCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGA > SRR4302535.2086138/1‑94 (MQ=60)
TTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCA < SRR4302535.1696816/94‑1 (MQ=60)
TTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCA < SRR4302535.2127721/94‑1 (MQ=60)
CGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCGTGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATA < SRR4302535.782693/94‑1 (MQ=60)
GTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTTTAAAGATCATAA > SRR4302535.758659/1‑94 (MQ=60)
GTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAA > SRR4302535.3896981/1‑94 (MQ=60)
TTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAAC < SRR4302535.906098/94‑1 (MQ=60)
TTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAAC > SRR4302535.3220447/1‑94 (MQ=60)
TGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCC > SRR4302535.977925/1‑94 (MQ=60)
GATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCG < SRR4302535.3173121/94‑1 (MQ=60)
ATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGC > SRR4302535.4294948/1‑94 (MQ=60)
ATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGC > SRR4302535.4393709/1‑94 (MQ=60)
AATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCAT > SRR4302535.878648/1‑94 (MQ=60)
ATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATA > SRR4302535.4009532/1‑94 (MQ=60)
ATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATA > SRR4302535.4020875/1‑94 (MQ=60)
TTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATAT < SRR4302535.2950318/94‑1 (MQ=60)
TTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATAT > SRR4302535.1775841/1‑94 (MQ=60)
TTAATTTCCTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATAT < SRR4302535.1939612/94‑1 (MQ=60)
TGAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTCTATAAAGATCATAACCCGCCATAT < SRR4302535.1328568/94‑1 (MQ=60)
TAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATT < SRR4302535.586414/94‑1 (MQ=60)
AATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGACATATTC > SRR4302535.27814/1‑94 (MQ=60)
ATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCA > SRR4302535.4349643/1‑94 (MQ=60)
ATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCA > SRR4302535.1899453/1‑94 (MQ=60)
ATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTAA > SRR4302535.3780507/1‑94 (MQ=60)
TTTCTTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCAT < SRR4302535.3849617/94‑1 (MQ=60)
TTCTTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GC‑GGGG‑GTCTTGTTTATAAAGATCATAACCCGCCATATTCATT < SRR4302535.1779454/94‑1 (MQ=60)
TCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑TTTGTTTATAAAGATCATAACCCGCCATATTCATTA < SRR4302535.3430605/94‑1 (MQ=60)
TGTTATGTTTTCATCTGGCATGAACATTCTTAATACTTTATCGACCAGA‑GCGGGGG‑G‑TTTTTTTATAAAAATCATACCCCGCCATATTCATTAA < SRR4302535.3449794/94‑1 (MQ=60)
CGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAA > SRR4302535.546357/1‑94 (MQ=60)
GTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAAC > SRR4302535.4632466/1‑94 (MQ=60)
TTATTTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATACCCCGCCATATTCATTAACC < SRR4302535.1119072/94‑1 (MQ=60)
TTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACC > SRR4302535.4626311/1‑94 (MQ=60)
TTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACC > SRR4302535.4035614/1‑94 (MQ=60)
TATTTTTTCATCGGGCATGAACATTCTTAATACGTTATCGACCAGA‑GC‑GGGG‑GTCTTTTTTATAAAGATCATAACCCGCCATATTCATTAACCA < SRR4302535.2579778/94‑1 (MQ=60)
TATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCA > SRR4302535.1087296/1‑94 (MQ=60)
tttTTTTCATCTGGCATGAACATTCTTAATCCGTTACCGCCCAGA‑GCGGGGG‑G‑CTTTTTTATAAAGATCATACCCCGCCATATTCATTAACCAG < SRR4302535.151300/91‑1 (MQ=60)
TTGTTTTCATCTGGCATGAACATTCTTAATGCTTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTAAAAAGATCAAAACCCGCCATATTCATTAACCAG < SRR4302535.2767998/94‑1 (MQ=60)
TTGTTTTCATCTGGAATGAACTTTCTTAATACGTTATCGACCAGA‑GC‑GGGG‑GTCTTTTTTATAAAGATCATAACCCGCCATATTCATTAACCAG < SRR4302535.2329910/94‑1 (MQ=60)
GTTTTCATCTGGCATAAACATTCTTAATCCGTTATCGACCAGA‑GCGGGGG‑G‑TTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTT < SRR4302535.3592065/94‑1 (MQ=60)
TTTTCATCGGGCATAAACATTCTTAATCCGTTATCGACCAGAGGG‑GGGG‑G‑TTTGTTTAAAAAGATCATACCCCGCCATATTCATTAACCAGTTT < SRR4302535.830600/94‑1 (MQ=57)
TTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTT > SRR4302535.1699224/1‑94 (MQ=60)
CATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAA > SRR4302535.2708997/1‑94 (MQ=60)
CATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAA > SRR4302535.2256081/1‑94 (MQ=60)
TCTGACATGAGCATTTTTAATACGTTATCGCCCAGAGGG‑GGGG‑G‑TTTGTTTATAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACA < SRR4302535.4017081/94‑1 (MQ=57)
GCATGAACATTCTTAATACGTTATCGCCCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTC < SRR4302535.3698659/94‑1 (MQ=60)
aataacCATTCTAAATACGTTATCGACGAGAGGG‑GGGG‑G‑CTTGTTTATAAAGATCAAAACCCGCCATATTCATTAACCAGTTTTGAACAATTCC < SRR4302535.4315859/88‑1 (MQ=60)
CATGAACATTTTTAATACGTTATCGACCAGAGGG‑GGGG‑G‑TTTTTTTATAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCC < SRR4302535.3672208/94‑1 (MQ=60)
ATGACAATTCTAAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTAAAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCG < SRR4302535.190917/94‑1 (MQ=60)
ATGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCG > SRR4302535.1372797/1‑94 (MQ=60)
TGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGC > SRR4302535.627920/1‑94 (MQ=60)
TGAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGC > SRR4302535.3303183/1‑94 (MQ=60)
GAACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑TTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCT < SRR4302535.3714518/94‑1 (MQ=60)
ACATTCTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGA > SRR4302535.4070511/1‑94 (MQ=60)
TTTTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑TTTGTTTAAAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGG < SRR4302535.1041450/94‑1 (MQ=60)
TTTTAATACGTTATCGACAAGA‑GG‑GGGGTG‑TTTTTTTAAAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGC < SRR4302535.841902/94‑1 (MQ=60)
TCTTAATCCTTTACCGCCCAGA‑GCGGGGG‑G‑TTTGTTTAAAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGC < SRR4302535.3562747/94‑1 (MQ=60)
CTTAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCA > SRR4302535.2809473/1‑94 (MQ=60)
TTAATGCGTTATCGACCAGG‑GC‑GGGG‑GTCTTGTTTATAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCAC < SRR4302535.3237/94‑1 (MQ=60)
TTAATACGTTATCGCCCAGA‑GG‑GGGG‑GTTTTGTTTAAAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCAC < SRR4302535.3218554/94‑1 (MQ=60)
TAATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACC > SRR4302535.2540347/1‑94 (MQ=60)
AATACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCA > SRR4302535.2008619/1‑94 (MQ=60)
TCGTTCTCGACCAGA‑GC‑GGGG‑GTCTTTTTTATAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCA < SRR4302535.573655/94‑1 (MQ=60)
ACGTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCA > SRR4302535.2665316/1‑94 (MQ=60)
CGTTATCGACCAGAGGG‑GGGG‑G‑TTTGTTTATAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAA < SRR4302535.2876763/94‑1 (MQ=60)
GTTATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAAT > SRR4302535.3065920/1‑94 (MQ=60)
TATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAA > SRR4302535.2061527/1‑94 (MQ=60)
ATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAAT > SRR4302535.4097939/1‑94 (MQ=60)
ATCGACCAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAAT > SRR4302535.3065244/1‑94 (MQ=60)
CAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCAT > SRR4302535.3610545/1‑94 (MQ=60)
CAGA‑GCGGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCAT > SRR4302535.3974126/1‑94 (MQ=60)
AGA‑GCGGGGG‑G‑CTTGTTTATAAAGATTATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCATC > SRR4302535.789927/1‑94 (MQ=60)
GA‑GCGGGGG‑G‑TTTTTTTATAAAAATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCATCA < SRR4302535.182835/94‑1 (MQ=60)
GA‑GCGGGGG‑G‑TTTGTTTATAAAAATCAAACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCATCA < SRR4302535.435710/94‑1 (MQ=60)
cgGGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCATCACAA > SRR4302535.4488559/3‑94 (MQ=60)
G‑GGGG‑G‑CTTTTTTAAAAATATAATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCATCACAAC < SRR4302535.1503288/94‑1 (MQ=60)
GGGG‑G‑TTTTTTTAAAAAGATAATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCATCACAACA < SRR4302535.4478200/94‑1 (MQ=60)
GGG‑G‑CTTGTTTATAAAGATCATACCCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCATCACAACAT < SRR4302535.4429270/94‑1 (MQ=60)
GG‑G‑TTTTTTTATAAAGATCATACGCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCATCACAACATC < SRR4302535.7273/94‑1 (MQ=60)
G‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCATCACAACATCT > SRR4302535.4655821/1‑94 (MQ=60)
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TACATGACACTTAATTCATTCGTTTGATGAATTAATTTCGTTATGTTTTCATCTGGCATGAACATTCTTAATACGTTATCGACCAGA‑GC‑GGGG‑G‑CTTGTTTATAAAGATCATAACCCGCCATATTCATTAACCAGTTTTGAACAATTCCGCTGAAGGCACCATCAATAATAATCATCACAACATCT > NC_000913/3410441‑3410626
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
