Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,439,191 T→C H41R (CAC→CGC)  rpsD ← 30S ribosomal subunit protein S4

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,439,1910TC100.0% 726.4 / NA 230H41R (CAC→CGC) rpsD30S ribosomal subunit protein S4
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (110/120);  total (110/120)

Only 100 of 240 total aligned reads displayed.

TGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGCTC  >  NC_000913/3439101‑3439280
                                                                                          |                                                                                         
tGACGCTCCAGCACACCATATATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCgcgc                                                                                         <  2:4217574/93‑1 (MQ=255)
tGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCgcgc                                                                                         >  1:3912060/1‑93 (MQ=255)
 gACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCt                                                                                        <  2:1907657/93‑1 (MQ=255)
    gCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGc                                                                                     >  1:1767836/1‑93 (MQ=255)
      tCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCa                                                                                   <  2:453591/93‑1 (MQ=255)
      tCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCa                                                                                   <  1:3073342/93‑1 (MQ=255)
       ccAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAg                                                                                  >  2:4510656/1‑93 (MQ=255)
        cAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAgg                                                                                 <  2:1388779/93‑1 (MQ=255)
        cAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAgg                                                                                 <  1:3925107/93‑1 (MQ=255)
         aGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGa                                                                                <  2:681551/93‑1 (MQ=255)
         aGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGa                                                                                >  1:3433377/1‑93 (MQ=255)
          gCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAg                                                                               <  1:4225364/93‑1 (MQ=255)
          gCACACCATAGATACGGCGAACTTTTTGCTTGTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAg                                                                               <  1:3249286/93‑1 (MQ=255)
          gCACACCACAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAg                                                                               <  2:2872867/93‑1 (MQ=255)
           cacaCCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGc                                                                              <  2:4077909/93‑1 (MQ=255)
            acacCATAGATACGGCGAAATTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCt                                                                             >  2:815070/1‑93 (MQ=255)
             cacCATAGATACGGCGAGCTTTTTGCTTTTCACGCAACGGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCtt                                                                            <  1:387184/93‑1 (MQ=255)
             cacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCtt                                                                            <  2:2134328/93‑1 (MQ=255)
             cacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCtt                                                                            <  1:3749770/93‑1 (MQ=255)
              acCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTg                                                                           >  2:3946988/1‑93 (MQ=255)
              acCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTg                                                                           >  2:2560367/1‑93 (MQ=255)
                cATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGtt                                                                         >  1:4227265/1‑93 (MQ=255)
                 aTAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTc                                                                        <  1:2798671/93‑1 (MQ=255)
                  tAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCa                                                                       >  1:4150227/1‑93 (MQ=255)
                  tAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCa                                                                       >  2:4110736/1‑93 (MQ=255)
                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     >  1:4414585/1‑93 (MQ=255)
                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     >  1:3779602/1‑93 (MQ=255)
                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     <  1:3591188/93‑1 (MQ=255)
                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     >  2:1534732/1‑93 (MQ=255)
                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     <  1:760081/93‑1 (MQ=255)
                      tACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAttt                                                                   <  2:2336821/93‑1 (MQ=255)
                         ggCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTac                                                                <  1:1136155/93‑1 (MQ=255)
                         ggCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTac                                                                >  2:1240784/1‑93 (MQ=255)
                          gCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTaca                                                               <  2:1619364/93‑1 (MQ=255)
                            gAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACt                                                             >  2:2497099/1‑93 (MQ=255)
                            gAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACt                                                             >  1:609337/1‑93 (MQ=255)
                             aaCTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACtt                                                            <  2:2793125/93‑1 (MQ=255)
                               cTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTgg                                                          <  1:2004826/93‑1 (MQ=255)
                               cTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTgg                                                          <  2:3079622/93‑1 (MQ=255)
                                tttttGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGt                                                         <  1:1917435/93‑1 (MQ=255)
                                 ttttGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTa                                                        <  2:3462278/93‑1 (MQ=255)
                                  tttGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTat                                                       >  1:1467944/1‑93 (MQ=255)
                                    tGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGGTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcg                                                     >  2:2050860/1‑93 (MQ=255)
                                     tcTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcga                                                    <  1:1295728/92‑1 (MQ=255)
                                     gCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcga                                                    <  2:3109361/93‑1 (MQ=255)
                                      cTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcgat                                                   <  1:687850/93‑1 (MQ=255)
                                       ttttCACACAACTGCACACCATAGTGAGACAGACGCGCTTTACGCGCAGCGCGCGGGCCAGGAGCTTTTTCAATTGTCCGCGTGGTatggatc                                                  <  2:3401498/93‑1 (MQ=255)
                                        tttCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcgatcg                                                 <  1:2112431/93‑1 (MQ=255)
                                        tttCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcgatcg                                                 <  2:1695389/93‑1 (MQ=255)
                                        tttCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcgatcg                                                 <  2:381166/93‑1 (MQ=255)
                                         ttCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATcgc                                                >  2:1150113/1‑93 (MQ=255)
                                            aCGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATcgcgcg                                             >  1:4584329/1‑93 (MQ=255)
                                            aCGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATcgcgcg                                             >  2:4274628/1‑93 (MQ=255)
                                              gCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGaa                                           <  2:3862262/93‑1 (MQ=255)
                                              gCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGaa                                           <  2:3513782/93‑1 (MQ=255)
                                               cAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAAc                                          <  1:2292393/93‑1 (MQ=255)
                                                aaCTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACg                                         >  2:1922230/1‑93 (MQ=255)
                                                 aCTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGc                                        >  1:815303/1‑93 (MQ=255)
                                                  cTGCACACCATAGTCAGACAGACGCGGTTTACGCTCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGcc                                       <  1:2328978/93‑1 (MQ=255)
                                                  cTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGcc                                       <  1:4411059/93‑1 (MQ=255)
                                                  cTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGcc                                       >  1:3952397/1‑93 (MQ=255)
                                                   tGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCa                                      <  1:1105275/93‑1 (MQ=255)
                                                   tGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCa                                      <  1:2427352/93‑1 (MQ=255)
                                                      acgccATAGTCGGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACCCTTGGTATCGATCGCGCGAACGCCAGAc                                   <  2:629363/90‑1 (MQ=255)
                                                       cacCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACt                                  >  1:141491/1‑93 (MQ=255)
                                                       cacCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACt                                  >  1:224911/1‑93 (MQ=255)
                                                       cacCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACt                                  <  1:3050408/93‑1 (MQ=255)
                                                         ccATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTa                                >  2:925683/1‑93 (MQ=255)
                                                         ccATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTa                                <  1:2099921/93‑1 (MQ=255)
                                                          cATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTaa                               <  2:4438035/93‑1 (MQ=255)
                                                           aTAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCCAACGCCAGACTTAAg                              >  1:2639721/1‑93 (MQ=255)
                                                           aTAGTCAGACAGACGCGGGTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAg                              <  1:3844041/93‑1 (MQ=255)
                                                            tAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAgg                             >  2:2987112/1‑93 (MQ=255)
                                                              gTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGGCCCAACGCCAGACTTAAGGaa                           >  2:1498178/1‑93 (MQ=255)
                                                              gTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGaa                           <  1:12235/93‑1 (MQ=255)
                                                               tCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAAt                          >  1:3166587/1‑93 (MQ=255)
                                                                cagacagaCGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATa                         >  2:3654809/1‑93 (MQ=255)
                                                                cagacagaCGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATa                         >  1:527074/1‑93 (MQ=255)
                                                                  gacagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAg                       >  2:2597590/1‑93 (MQ=255)
                                                                  gacagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAg                       <  2:2171173/93‑1 (MQ=255)
                                                                  gacagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAg                       <  1:936792/93‑1 (MQ=255)
                                                                  gacagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAg                       <  1:4492288/93‑1 (MQ=255)
                                                                   acagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGt                      <  1:2905244/93‑1 (MQ=255)
                                                                    cagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTc                     <  1:3764275/93‑1 (MQ=255)
                                                                    cagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTc                     <  1:2545176/93‑1 (MQ=255)
                                                                    cagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTc                     >  2:507334/1‑93 (MQ=255)
                                                                      gacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCgg                   >  2:3585408/1‑93 (MQ=255)
                                                                      gacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCgg                   >  1:1834205/1‑93 (MQ=255)
                                                                      gacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCgg                   >  2:1072851/1‑93 (MQ=255)
                                                                      gacGCGGTTTACGCGCACCGCGCTGGCCAGGAGATTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCgg                   >  1:101227/1‑93 (MQ=255)
                                                                       acGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGt                  >  1:4085275/1‑93 (MQ=255)
                                                                           ggTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGccc              <  2:1962157/93‑1 (MQ=255)
                                                                            gTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCt             >  2:1259781/1‑93 (MQ=255)
                                                                             tttACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTc            <  2:2266671/93‑1 (MQ=255)
                                                                             tttACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTc            >  1:1526814/1‑93 (MQ=255)
                                                                              ttACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCa           <  1:4045233/93‑1 (MQ=255)
                                                                                 cgcgCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCacga        <  1:1651570/93‑1 (MQ=255)
                                                                                  gcgcACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCacgac       <  1:4553619/93‑1 (MQ=255)
                                                                                      aCCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGCt   <  1:3544130/93‑1 (MQ=255)
                                                                                       ccGCGCTGGCGAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAACAAGTCGGTGCCCTCACGACGGCTc  <  2:202811/93‑1 (MQ=255)
                                                                                          |                                                                                         
TGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGCTC  >  NC_000913/3439101‑3439280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGCTCAGCT  >  NC_000913/3439098‑3439284
                                                                                             |                                                                                             
AACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGC                                                                                               <  SRR4302535.2729513/94‑1 (MQ=60)
AACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGC                                                                                               >  SRR4302535.2579963/1‑94 (MQ=60)
AACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGC                                                                                               >  SRR4302535.2461196/1‑94 (MQ=60)
AACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGC                                                                                               >  SRR4302535.3214909/1‑94 (MQ=60)
 ACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCG                                                                                              >  SRR4302535.1099760/1‑94 (MQ=60)
 ACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCG                                                                                              <  SRR4302535.1541834/94‑1 (MQ=60)
 ACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCG                                                                                              >  SRR4302535.430436/1‑94 (MQ=60)
  CTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGC                                                                                             >  SRR4302535.3938840/1‑94 (MQ=60)
   TGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCT                                                                                            <  SRR4302535.4316192/94‑1 (MQ=60)
    GACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTG                                                                                           >  SRR4302535.4443177/1‑94 (MQ=60)
    GACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTG                                                                                           <  SRR4302535.3076168/94‑1 (MQ=60)
     ACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGG                                                                                          <  SRR4302535.2166358/94‑1 (MQ=60)
      CGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGC                                                                                         >  SRR4302535.341/1‑94 (MQ=60)
      CGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGC                                                                                         >  SRR4302535.1780654/1‑94 (MQ=60)
      CGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGC                                                                                         >  SRR4302535.2368259/1‑94 (MQ=60)
      CGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGC                                                                                         <  SRR4302535.4255369/94‑1 (MQ=60)
       GCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCC                                                                                        >  SRR4302535.356/1‑94 (MQ=60)
       GCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCC                                                                                        >  SRR4302535.1770166/1‑94 (MQ=60)
       GCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCC                                                                                        >  SRR4302535.943330/1‑94 (MQ=60)
         TCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAG                                                                                      >  SRR4302535.1467512/1‑94 (MQ=60)
         TCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAG                                                                                      <  SRR4302535.3094796/94‑1 (MQ=60)
          CCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGG                                                                                     <  SRR4302535.1153969/94‑1 (MQ=60)
           CAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGA                                                                                    >  SRR4302535.3457234/1‑94 (MQ=60)
           CAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGA                                                                                    <  SRR4302535.3951928/94‑1 (MQ=60)
            AGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAG                                                                                   <  SRR4302535.4188027/94‑1 (MQ=60)
            AGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAG                                                                                   >  SRR4302535.2105097/1‑94 (MQ=60)
             GCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGC                                                                                  <  SRR4302535.4254274/94‑1 (MQ=60)
             GCACACCATAGATACGGCGAACTTTTTGCTTGTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGC                                                                                  <  SRR4302535.3271860/94‑1 (MQ=60)
              CACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCT                                                                                 >  SRR4302535.2930139/1‑94 (MQ=60)
              CACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCT                                                                                 >  SRR4302535.2067826/1‑94 (MQ=60)
              CACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACACACCCGGTTTACGCGCACCGCGCTGCCCAGGAGCT                                                                                 >  SRR4302535.1405620/1‑94 (MQ=60)
                CACCATAGATACGGCGAGCTTTTTGCTTTTCACGCAACGGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTG                                                                               <  SRR4302535.389875/94‑1 (MQ=60)
                CACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTG                                                                               <  SRR4302535.3775715/94‑1 (MQ=60)
                CACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTG                                                                               <  SRR4302535.3936422/94‑1 (MQ=60)
                  CCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTT                                                                             <  SRR4302535.2117067/94‑1 (MQ=60)
                  CCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTT                                                                             <  SRR4302535.3798269/94‑1 (MQ=60)
                  CCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTT                                                                             >  SRR4302535.4256192/1‑94 (MQ=60)
                  CCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTT                                                                             >  SRR4302535.4556608/1‑94 (MQ=60)
                   CATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTC                                                                            >  SRR4302535.1619944/1‑94 (MQ=60)
                    ATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCA                                                                           >  SRR4302535.4178647/1‑94 (MQ=60)
                    ATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCA                                                                           <  SRR4302535.2924228/94‑1 (MQ=60)
                    ATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCA                                                                           <  SRR4302535.2818587/94‑1 (MQ=60)
                    ATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCA                                                                           >  SRR4302535.4513697/1‑94 (MQ=60)
                      AGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAT                                                                         >  SRR4302535.824188/1‑94 (MQ=60)
                      AGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAT                                                                         >  SRR4302535.3867760/1‑94 (MQ=60)
                      AGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAT                                                                         >  SRR4302535.4444799/1‑94 (MQ=60)
                      AGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAT                                                                         >  SRR4302535.3805688/1‑94 (MQ=60)
                      AGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAT                                                                         >  SRR4302535.3595400/1‑94 (MQ=60)
                       GATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATT                                                                        <  SRR4302535.765435/94‑1 (MQ=60)
                       GATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATT                                                                        <  SRR4302535.3616098/94‑1 (MQ=60)
                        ATACGGCGATCTTTTTGCTTTTCACGCAACTGCACACCAGAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTT                                                                       <  SRR4302535.4135861/94‑1 (MQ=60)
                         TACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTT                                                                      >  SRR4302535.1092180/1‑94 (MQ=60)
                           CGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTAC                                                                    <  SRR4302535.1984447/94‑1 (MQ=60)
                            GGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACA                                                                   <  SRR4302535.1144255/94‑1 (MQ=60)
                             GCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACAC                                                                  >  SRR4302535.790848/1‑94 (MQ=60)
                              CGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACT                                                                 >  SRR4302535.2666178/1‑94 (MQ=60)
                              CGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACT                                                                 >  SRR4302535.37890/1‑94 (MQ=60)
                              CGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACT                                                                 >  SRR4302535.691539/1‑94 (MQ=60)
                              CGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACT                                                                 >  SRR4302535.613586/1‑94 (MQ=60)
                               GAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTT                                                                >  SRR4302535.4591882/1‑94 (MQ=60)
                                AACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTG                                                               <  SRR4302535.1142593/94‑1 (MQ=60)
                                 ACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGG                                                              <  SRR4302535.630288/94‑1 (MQ=60)
                                 ACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGG                                                              <  SRR4302535.3957023/94‑1 (MQ=60)
                                  CTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGT                                                             <  SRR4302535.2019269/94‑1 (MQ=60)
                                   TTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTA                                                            <  SRR4302535.1931251/94‑1 (MQ=60)
                                    TTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTAT                                                           >  SRR4302535.1478459/1‑94 (MQ=60)
                                        TCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGAT                                                       <  SRR4302535.1304971/94‑1 (MQ=60)
                                        GCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGAT                                                       >  SRR4302535.1662738/1‑94 (MQ=60)
                                        GCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGAT                                                       >  SRR4302535.1309242/1‑94 (MQ=60)
                                        GCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGAT                                                       <  SRR4302535.395032/94‑1 (MQ=60)
                                        GCTTTTCACGCAACTGCACACCACAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGAT                                                       <  SRR4302535.3122516/94‑1 (MQ=60)
                                         CTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATC                                                      <  SRR4302535.692669/94‑1 (MQ=60)
                                          TTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCG                                                     <  SRR4302535.2417494/94‑1 (MQ=60)
                                           TTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGC                                                    <  SRR4302535.2127678/94‑1 (MQ=60)
                                              CACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCG                                                 <  SRR4302535.2270686/94‑1 (MQ=60)
                                              CACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCG                                                 >  SRR4302535.4615547/1‑94 (MQ=60)
                                                 GCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAAC                                              <  SRR4302535.4000808/94‑1 (MQ=60)
                                                  CAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACG                                             >  SRR4302535.2583363/1‑94 (MQ=60)
                                                  CAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACG                                             <  SRR4302535.2308790/94‑1 (MQ=60)
                                                   AACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGC                                            >  SRR4302535.821020/1‑94 (MQ=60)
                                                    ACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCC                                           >  SRR4302535.3979382/1‑94 (MQ=60)
                                                     CTGCACACCATAGTCAGACAGACGCGGTTTACGCTCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCA                                          <  SRR4302535.2345636/94‑1 (MQ=60)
                                                     CTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCA                                          <  SRR4302535.3766432/94‑1 (MQ=60)
                                                     CTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCA                                          <  SRR4302535.4441249/94‑1 (MQ=60)
                                                     CTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGGATCGATCGCGCGAACGCCA                                          >  SRR4302535.1527872/1‑94 (MQ=60)
                                                      TGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAG                                         <  SRR4302535.1113173/94‑1 (MQ=60)
                                                      TGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAG                                         <  SRR4302535.3069529/94‑1 (MQ=60)
                                                      TGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAG                                         <  SRR4302535.2444844/94‑1 (MQ=60)
                                                         ACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACT                                      >  SRR4302535.1837214/1‑94 (MQ=60)
                                                         ACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACT                                      >  SRR4302535.4334214/1‑94 (MQ=60)
                                                         ACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACT                                      >  SRR4302535.142483/1‑94 (MQ=60)
                                                         ACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACT                                      >  SRR4302535.226460/1‑94 (MQ=60)
                                                          CACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTT                                     <  SRR4302535.3071775/94‑1 (MQ=60)
                                                           ACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTA                                    >  SRR4302535.2329731/1‑94 (MQ=60)
                                                            CCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAA                                   <  SRR4302535.2115066/94‑1 (MQ=60)
                                                            CCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAA                                   >  SRR4302535.1219902/1‑94 (MQ=60)
                                                             CATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAG                                  <  SRR4302535.3850886/94‑1 (MQ=60)
                                                             CATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCCAACGCCAGACTTAAG                                  >  SRR4302535.2658630/1‑94 (MQ=60)
                                                              ATAGTCAGACAGACGCGGGTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGG                                 <  SRR4302535.3870517/94‑1 (MQ=60)
                                                                 GTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAAT                              >  SRR4302535.3188531/1‑94 (MQ=60)
                                                                 GTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAAT                              <  SRR4302535.12328/94‑1 (MQ=60)
                                                                  TCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATA                             >  SRR4302535.530755/1‑94 (MQ=60)
                                                                    AGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAG                           <  SRR4302535.4140587/94‑1 (MQ=60)
                                                                     GACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGT                          <  SRR4302535.4523124/94‑1 (MQ=60)
                                                                     GACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGT                          <  SRR4302535.943428/94‑1 (MQ=60)
                                                                      ACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTC                         <  SRR4302535.1298367/94‑1 (MQ=60)
                                                                      ACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTC                         >  SRR4302535.2243245/1‑94 (MQ=60)
                                                                      ACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTC                         <  SRR4302535.2925781/94‑1 (MQ=60)
                                                                       CAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCG                        <  SRR4302535.2563499/94‑1 (MQ=60)
                                                                       CAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCG                        <  SRR4302535.3790279/94‑1 (MQ=60)
                                                                        AGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGG                       <  SRR4302535.601403/94‑1 (MQ=60)
                                                                        AGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGG                       >  SRR4302535.1847439/1‑94 (MQ=60)
                                                                        AGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGATTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGG                       >  SRR4302535.101942/1‑94 (MQ=60)
                                                                         GACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGT                      >  SRR4302535.4113224/1‑94 (MQ=60)
                                                                         GACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGT                      >  SRR4302535.4487545/1‑94 (MQ=60)
                                                                             CGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCC                  >  SRR4302535.2502554/1‑94 (MQ=60)
                                                                               GTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTC                >  SRR4302535.3236870/1‑94 (MQ=60)
                                                                               GTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTC                >  SRR4302535.1537815/1‑94 (MQ=60)
                                                                                 TTACGCGCGCCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCAC              <  SRR4302535.1786499/94‑1 (MQ=60)
                                                                                 TTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCAC              <  SRR4302535.3496379/94‑1 (MQ=60)
                                                                                 TTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCAC              <  SRR4302535.743305/94‑1 (MQ=60)
                                                                                 TTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCAC              <  SRR4302535.3649650/94‑1 (MQ=60)
                                                                                 TTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCAC              <  SRR4302535.1855672/94‑1 (MQ=60)
                                                                                 TTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCAC              <  SRR4302535.4072927/94‑1 (MQ=60)
                                                                                  TACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACG             <  SRR4302535.516711/94‑1 (MQ=60)
                                                                                  TACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACG             <  SRR4302535.3877577/94‑1 (MQ=60)
                                                                                    CGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGAC           <  SRR4302535.1663513/94‑1 (MQ=60)
                                                                                    CGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGAC           <  SRR4302535.483448/94‑1 (MQ=60)
                                                                                    CGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGAC           >  SRR4302535.2590001/1‑94 (MQ=60)
                                                                                    CGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGAC           >  SRR4302535.3181331/1‑94 (MQ=60)
                                                                                     GCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACG          <  SRR4302535.4584730/94‑1 (MQ=60)
                                                                                     GCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACG          <  SRR4302535.4092282/94‑1 (MQ=60)
                                                                                      CGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGG         >  SRR4302535.4055836/1‑94 (MQ=60)
                                                                                       GCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGC        >  SRR4302535.3933149/1‑94 (MQ=60)
                                                                                         ACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGCTC      <  SRR4302535.3568745/94‑1 (MQ=60)
                                                                                           CGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGCTCAG    <  SRR4302535.49608/94‑1 (MQ=60)
                                                                                             CGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTACCCTCACGACGGCTCAGCT  <  SRR4302535.2824223/94‑1 (MQ=60)
                                                                                             |                                                                                             
AACTGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGCTCAGCT  >  NC_000913/3439098‑3439284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑