Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,471,960	T→C	H77R (CAC→CGC)	rpsL ←	30S ribosomal subunit protein S12

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,471,960	0	T	C	100.0%	625.7 / NA	201	H77R (CAC→CGC)	rpsL	30S ribosomal subunit protein S12
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (99/102); total (99/102)

Only 100 of 212 total aligned reads displayed.

ACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCG  >  NC_000913/3471870‑3472049

aCGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAgcgc                                                                                         >  2:534256/1‑93 (MQ=255)

  gCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTc                                                                                       <  1:2718720/93‑1 (MQ=255)

      gAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGc                                                                                   >  1:4522448/1‑93 (MQ=255)

        gCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAg                                                                                 <  2:3837490/93‑1 (MQ=255)

        gCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAg                                                                                 <  1:3796243/93‑1 (MQ=255)

         cAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAgg                                                                                <  2:176095/93‑1 (MQ=255)

         cAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAgg                                                                                <  1:3550373/93‑1 (MQ=255)

           gTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGtt                                                                              >  2:3423463/1‑93 (MQ=255)

           gTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGtt                                                                              >  1:3056348/1‑93 (MQ=255)

           gTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGtt                                                                              >  2:784838/1‑93 (MQ=255)

           gTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGtt                                                                              >  2:1388564/1‑93 (MQ=255)

            tCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTtg                                                                             >  1:3743102/1‑93 (MQ=255)

            tCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTtg                                                                             <  1:2839536/93‑1 (MQ=255)

              aaGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTTTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTtgtg                                                                           >  1:4687206/1‑93 (MQ=255)

              aaGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACTACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTtgtg                                                                           <  1:3300478/93‑1 (MQ=255)

              aaGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTtgtg                                                                           <  2:3480266/93‑1 (MQ=255)

               aGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGa                                                                          <  2:690812/93‑1 (MQ=255)

                  gcACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCt                                                                       >  2:1408249/1‑93 (MQ=255)

                  gcACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCt                                                                       >  1:4130136/1‑93 (MQ=255)

                   caccacGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCtt                                                                      <  1:4598723/93‑1 (MQ=255)

                     ccacGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTca                                                                    >  1:2151695/1‑93 (MQ=255)

                      cacGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTcac                                                                   >  2:17741/1‑93 (MQ=255)

                         gTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTcaccac                                                                <  1:4327228/93‑1 (MQ=255)

                         gTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTcaccac                                                                >  2:4203267/1‑93 (MQ=255)

                         gTACGGTGTGGTAACGAACACCCGGGAGGGCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTcaccac                                                                >  2:3455543/1‑93 (MQ=255)

                             ggTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGAt                                                            <  1:1629209/93‑1 (MQ=255)

                             ggTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGAt                                                            <  1:1868565/93‑1 (MQ=255)

                              gtgtGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATg                                                           >  1:2014171/1‑93 (MQ=255)

                              gtgtGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATg                                                           >  1:4254818/1‑93 (MQ=255)

                              gtgtGGTAACGAACACCCGGGAGGGCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGCTg                                                           >  2:1533693/1‑93 (MQ=255)

                                gtgGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTa                                                         <  2:4098740/93‑1 (MQ=255)

                                gtgGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTa                                                         <  2:3932143/93‑1 (MQ=255)

                                 tgGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAg                                                        <  1:1998698/93‑1 (MQ=255)

                                  ggTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAgg                                                       >  1:2632061/1‑93 (MQ=255)

                                   gTAGCGAACACCCGGGAGGTCTTTAACGCGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGa                                                      <  1:1287359/93‑1 (MQ=255)

                                   gTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGa                                                      <  1:687226/93‑1 (MQ=255)

                                   gTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGa                                                      >  1:442207/1‑93 (MQ=255)

                                   gTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGa                                                      >  1:2311649/1‑93 (MQ=255)

                                        gAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCa                                                 >  2:1226356/1‑93 (MQ=255)

                                        gAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCa                                                 >  2:3668967/1‑93 (MQ=255)

                                         aaCACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCAc                                                <  2:280538/93‑1 (MQ=255)

                                           cacCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACtt                                              >  1:1490839/1‑93 (MQ=255)

                                            acCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTc                                             >  1:2489864/1‑93 (MQ=255)

                                               cGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACAGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGaa                                          >  1:3354162/1‑93 (MQ=255)

                                                gggAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGaaa                                         <  1:288466/93‑1 (MQ=255)

                                                  gAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGACAcc                                       >  2:59907/1‑93 (MQ=255)

                                                  gAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAAcc                                       <  2:965624/93‑1 (MQ=255)

                                                  gAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAAcc                                       <  1:1239432/93‑1 (MQ=255)

                                                  gAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAAcc                                       >  1:1802530/1‑93 (MQ=255)

                                                   aGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCg                                      >  1:1328869/1‑93 (MQ=255)

                                                    ggTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGt                                     >  2:1942782/1‑93 (MQ=255)

                                                    ggTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGt                                     >  1:2773118/1‑93 (MQ=255)

                                                    ggTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGt                                     >  2:89771/1‑93 (MQ=255)

                                                    ggTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGt                                     >  1:3930984/1‑93 (MQ=255)

                                                      tCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTa                                   <  1:1982584/93‑1 (MQ=255)

                                                      tCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTa                                   >  2:2418251/1‑93 (MQ=255)

                                                      tCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTa                                   >  1:2579085/1‑93 (MQ=255)

                                                      tCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTa                                   <  1:2649027/93‑1 (MQ=255)

                                                      tCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTa                                   <  1:791892/93‑1 (MQ=255)

                                                      tCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTa                                   <  2:4187747/93‑1 (MQ=255)

                                                       cTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAg                                  >  2:495887/1‑93 (MQ=255)

                                                       cTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAg                                  <  1:3473481/93‑1 (MQ=255)

                                                       cTTGAACACGACCGCCACGGATGAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAg                                  <  2:295718/93‑1 (MQ=255)

                                                        tttAACACGACCGCCACGGATCAGGCTCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGt                                 >  2:2219877/1‑93 (MQ=255)

                                                        tttAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGt                                 >  1:104818/1‑93 (MQ=255)

                                                        tttAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGt                                 <  2:2173280/93‑1 (MQ=255)

                                                        tttAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGt                                 >  1:4101334/1‑93 (MQ=255)

                                                         ttAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTc                                >  2:1027531/1‑93 (MQ=255)

                                                          tAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCa                               <  1:1002357/93‑1 (MQ=255)

                                                          tAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCa                               <  2:257937/93‑1 (MQ=255)

                                                            acacGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGa                             <  1:3113702/93‑1 (MQ=255)

                                                            acacGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGa                             <  1:3663243/93‑1 (MQ=255)

                                                            acacGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGa                             >  1:530907/1‑93 (MQ=255)

                                                             cacGACCGCCCCGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGAc                            <  2:3108926/93‑1 (MQ=255)

                                                             cacGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGAc                            <  1:3156430/93‑1 (MQ=255)

                                                                 aCCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAac                        >  1:136307/1‑93 (MQ=255)

                                                                   cGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAacac                      <  2:3281339/93‑1 (MQ=255)

                                                                    gCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTGGGCCGAACACg                     >  1:3895337/1‑93 (MQ=255)

                                                                    gCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACg                     <  1:331112/93‑1 (MQ=255)

                                                                    gCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACg                     <  1:4467224/93‑1 (MQ=255)

                                                                      cACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGc                   >  1:841505/1‑93 (MQ=255)

                                                                      cACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGc                   >  2:4365212/1‑93 (MQ=255)

                                                                      cACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGc                   >  2:2757023/1‑93 (MQ=255)

                                                                       aCGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCa                  >  2:1274342/1‑93 (MQ=255)

                                                                       aCGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCa                  <  2:4302940/93‑1 (MQ=255)

                                                                       aCGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCa                  >  2:3048857/1‑93 (MQ=255)

                                                                       aCGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCa                  <  2:3982192/93‑1 (MQ=255)

                                                                       aCGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCa                  >  1:4046315/1‑93 (MQ=255)

                                                                        cGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCAt                 <  2:3406390/93‑1 (MQ=255)

                                                                         ggatcaggatcaCGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATa                <  1:1832320/93‑1 (MQ=255)

                                                                           atcaggatcaCGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACt              >  2:4019271/1‑93 (MQ=255)

                                                                           atcaggatcaCGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACt              <  2:771527/93‑1 (MQ=255)

                                                                           atcaggatcaCGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACt              >  1:750721/1‑93 (MQ=255)

                                                                           atcaggatcaCGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACt              <  2:3277151/93‑1 (MQ=255)

                                                                             caggatcaCGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACttt            >  2:1903865/1‑93 (MQ=255)

                                                                              aggatcaCGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTa           <  2:1357048/93‑1 (MQ=255)

                                                                               ggatcaCGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTAc          >  2:3738451/1‑93 (MQ=255)

                                                                                gatcaCGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACg         >  1:2113374/1‑93 (MQ=255)

                                                                                  tcaCGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGCTGTAGGAACTCACTTCGAAACCGTTAGTCAGACGACAACGGCATCATTTACGCa       >  2:1576767/1‑93 (MQ=255)

                                                                                      ggAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAgcgc   <  2:2851391/93‑1 (MQ=255)

ACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCG  >  NC_000913/3471870‑3472049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGT  >  NC_000913/3471869‑3472053

AACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGC                                                                                             >  SRR4302535.245892/1‑94 (MQ=60)

 ACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCT                                                                                            <  SRR4302535.4473639/94‑1 (MQ=60)

 ACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCT                                                                                            <  SRR4302535.2134832/94‑1 (MQ=60)

  CGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTC                                                                                           <  SRR4302535.2964804/94‑1 (MQ=60)

   GCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCC                                                                                          <  SRR4302535.2738137/94‑1 (MQ=60)

   GCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCC                                                                                          <  SRR4302535.392256/94‑1 (MQ=60)

    CCGGAGCAGTCAAGCGCACCACGTACGGTGTTGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCT                                                                                         <  SRR4302535.2028498/94‑1 (MQ=60)

     CGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTG                                                                                        >  SRR4302535.4640127/1‑94 (MQ=60)

      GGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGC                                                                                       >  SRR4302535.4553437/1‑94 (MQ=60)

       GAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCA                                                                                      >  SRR4302535.3209834/1‑94 (MQ=60)

         GCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGG                                                                                    <  SRR4302535.3822412/94‑1 (MQ=60)

          CAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGT                                                                                   <  SRR4302535.3575012/94‑1 (MQ=60)

           AGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTT                                                                                  >  SRR4302535.4108451/1‑94 (MQ=60)

           AGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTT                                                                                  >  SRR4302535.3077739/1‑94 (MQ=60)

           AGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTT                                                                                  >  SRR4302535.2795664/1‑94 (MQ=60)

           AGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTG                                                                                  >  SRR4302535.115537/1‑94 (MQ=60)

           AGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTGAACACGACCGCCACGGATCAGGATCACTGAGCGCCCCTGCAGGTT                                                                                  <  SRR4302535.2088036/94‑1 (MQ=60)

            GTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTG                                                                                 >  SRR4302535.1993779/1‑94 (MQ=60)

            GTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTG                                                                                 <  SRR4302535.3154013/94‑1 (MQ=60)

            GTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTG                                                                                 >  SRR4302535.3768998/1‑94 (MQ=60)

             TCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGT                                                                                <  SRR4302535.2859678/94‑1 (MQ=60)

              CAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTTTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTG                                                                               >  SRR4302535.4719022/1‑94 (MQ=60)

              CAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTG                                                                               >  SRR4302535.1332991/1‑94 (MQ=60)

               AAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACTACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGA                                                                              <  SRR4302535.3323430/94‑1 (MQ=60)

               AAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGA                                                                              >  SRR4302535.3736367/1‑94 (MQ=60)

                AGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGGCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGAC                                                                             >  SRR4302535.45149/1‑94 (MQ=60)

                  CGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCT                                                                           >  SRR4302535.4158397/1‑94 (MQ=60)

                   GCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTT                                                                          <  SRR4302535.754612/94‑1 (MQ=60)

                    CACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTC                                                                         >  SRR4302535.2764237/1‑94 (MQ=60)

                    CACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTC                                                                         <  SRR4302535.4630005/94‑1 (MQ=60)

                     ACCACGTACGGTGTGGTAACGAGCACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCA                                                                        <  SRR4302535.3883641/94‑1 (MQ=60)

                     ACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCA                                                                        >  SRR4302535.2167163/1‑94 (MQ=60)

                     ACCACGTACGGTGTGGTAACGAACACCCGGGAGGCCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCA                                                                        >  SRR4302535.3785352/1‑94 (MQ=60)

                          GTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACC                                                                   <  SRR4302535.4356820/94‑1 (MQ=60)

                          GTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACC                                                                   <  SRR4302535.3654385/94‑1 (MQ=60)

                          CTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACC                                                                   <  SRR4302535.2700583/94‑1 (MQ=60)

                           TACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCG                                                                  >  SRR4302535.3012503/1‑94 (MQ=60)

                            ACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGA                                                                 >  SRR4302535.1873830/1‑94 (MQ=60)

                              GGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATG                                                               >  SRR4302535.2028680/1‑94 (MQ=60)

                              GGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATG                                                               >  SRR4302535.4283966/1‑94 (MQ=60)

                              GGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATG                                                               <  SRR4302535.803171/94‑1 (MQ=60)

                              GGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATG                                                               <  SRR4302535.1640973/94‑1 (MQ=60)

                              GGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATG                                                               <  SRR4302535.1882036/94‑1 (MQ=60)

                                 GTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAG                                                            >  SRR4302535.581489/1‑94 (MQ=60)

                                  TGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGG                                                           <  SRR4302535.223645/94‑1 (MQ=60)

                                  TGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGG                                                           <  SRR4302535.2013096/94‑1 (MQ=60)

                                  TGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGG                                                           >  SRR4302535.2650923/1‑94 (MQ=60)

                                   GGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGA                                                          >  SRR4302535.2328196/1‑94 (MQ=60)

                                   GGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGA                                                          >  SRR4302535.445303/1‑94 (MQ=60)

                                    GTAGCGAACACCCGGGAGGTCTTTAACGCGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAA                                                         <  SRR4302535.1296535/94‑1 (MQ=60)

                                    GTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAA                                                         <  SRR4302535.692039/94‑1 (MQ=60)

                                     TAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAG                                                        <  SRR4302535.4138594/94‑1 (MQ=60)

                                       ACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTC                                                      >  SRR4302535.4328245/1‑94 (MQ=60)

                                         GAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCAC                                                    <  SRR4302535.309631/94‑1 (MQ=60)

                                           ACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTT                                                  >  SRR4302535.1501544/1‑94 (MQ=60)

                                           ACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTT                                                  <  SRR4302535.2570759/94‑1 (MQ=60)

                                            CACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCTCCACCGATGTAGGAAGTCACTTC                                                 <  SRR4302535.3328065/94‑1 (MQ=60)

                                            CACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTC                                                 >  SRR4302535.2507822/1‑94 (MQ=60)

                                            CACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTC                                                 <  SRR4302535.710228/94‑1 (MQ=60)

                                               CCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACAGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAA                                              >  SRR4302535.3377518/1‑94 (MQ=60)

                                                 GGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAAC                                            <  SRR4302535.290487/94‑1 (MQ=60)

                                                 GGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAAC                                            <  SRR4302535.2338882/94‑1 (MQ=60)

                                                  GGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCGCCACCGATGTAGGAAGTCTCTTCGAAACC                                           <  SRR4302535.4016243/94‑1 (MQ=60)

                                                  GGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACC                                           >  SRR4302535.1815561/1‑94 (MQ=60)

                                                   GAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCG                                          >  SRR4302535.1338349/1‑94 (MQ=60)

                                                   GAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCG                                          <  SRR4302535.1248279/94‑1 (MQ=60)

                                                    AGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGT                                         <  SRR4302535.4326328/94‑1 (MQ=60)

                                                    AGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGT                                         >  SRR4302535.3957824/1‑94 (MQ=60)

                                                    AGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGT                                         >  SRR4302535.2792864/1‑94 (MQ=60)

                                                      GTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTA                                       <  SRR4302535.1479273/94‑1 (MQ=60)

                                                      GTCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTA                                       >  SRR4302535.2597616/1‑94 (MQ=60)

                                                       TCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAG                                      <  SRR4302535.797452/94‑1 (MQ=60)

                                                       TCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAG                                      <  SRR4302535.1996859/94‑1 (MQ=60)

                                                       TCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAG                                      <  SRR4302535.2667999/94‑1 (MQ=60)

                                                       TCTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAG                                      <  SRR4302535.2667998/94‑1 (MQ=60)

                                                        CTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGT                                     <  SRR4302535.3497615/94‑1 (MQ=60)

                                                        CTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGT                                     >  SRR4302535.105563/1‑94 (MQ=60)

                                                        CTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGT                                     >  SRR4302535.4129414/1‑94 (MQ=60)

                                                        CTTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGT                                     >  SRR4302535.2012302/1‑94 (MQ=60)

                                                         TTTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTC                                    <  SRR4302535.337301/94‑1 (MQ=60)

                                                          TTAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCA                                   >  SRR4302535.1823144/1‑94 (MQ=60)

                                                           TAACACGGCCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAG                                  <  SRR4302535.3409249/94‑1 (MQ=60)

                                                           TAACACGCCCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAG                                  <  SRR4302535.1820040/94‑1 (MQ=60)

                                                           TAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAG                                  <  SRR4302535.2900054/94‑1 (MQ=60)

                                                           TAACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAG                                  <  SRR4302535.1009475/94‑1 (MQ=60)

                                                            AACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGA                                 >  SRR4302535.4209123/1‑94 (MQ=60)

                                                            AACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGA                                 >  SRR4302535.534623/1‑94 (MQ=60)

                                                             ACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGAC                                <  SRR4302535.3135376/94‑1 (MQ=60)

                                                             ACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGAC                                <  SRR4302535.1278727/94‑1 (MQ=60)

                                                             ACACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGAC                                <  SRR4302535.3688605/94‑1 (MQ=60)

                                                              CACGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG                               <  SRR4302535.3178347/94‑1 (MQ=60)

                                                              CACGACCGCCACCGATCAGGATCACGGAGCGCTCCTGCAGGTTGCGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACG                               <  SRR4302535.1541247/94‑1 (MQ=60)

                                                                CGACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAA                             >  SRR4302535.1784899/1‑94 (MQ=60)

                                                                 GACCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAAC                            >  SRR4302535.137259/1‑94 (MQ=60)

                                                                   CCGCCGCGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACAC                          <  SRR4302535.1041025/94‑1 (MQ=60)

                                                                   CCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGGACAC                          >  SRR4302535.2607576/1‑94 (MQ=60)

                                                                   CCGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACAC                          <  SRR4302535.484244/94‑1 (MQ=60)

                                                                    CGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTGGGCCGAACACG                         >  SRR4302535.3922033/1‑94 (MQ=60)

                                                                    CGCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACG                         <  SRR4302535.3500576/94‑1 (MQ=60)

                                                                     GCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGG                        >  SRR4302535.375293/1‑94 (MQ=60)

                                                                     GCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGG                        <  SRR4302535.333408/94‑1 (MQ=60)

                                                                     GCCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGG                        <  SRR4302535.4497873/94‑1 (MQ=60)

                                                                      CCACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGC                       >  SRR4302535.847410/1‑94 (MQ=60)

                                                                       CACGGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCA                      >  SRR4302535.4074014/1‑94 (MQ=60)

                                                                          GGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATAC                   <  SRR4302535.4608573/94‑1 (MQ=60)

                                                                          GGATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATAC                   <  SRR4302535.1845541/94‑1 (MQ=60)

                                                                           GATCAGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACT                  >  SRR4302535.756012/1‑94 (MQ=60)

                                                                               AGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTAC              <  SRR4302535.4428275/94‑1 (MQ=60)

                                                                               AGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTAC              >  SRR4302535.770497/1‑94 (MQ=60)

                                                                               AGGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTAC              >  SRR4302535.1360291/1‑94 (MQ=60)

                                                                                GGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACG             <  SRR4302535.856866/94‑1 (MQ=60)

                                                                                GGATCACGGAGCGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACG             >  SRR4302535.2128627/1‑94 (MQ=60)

                                                                                           CGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGT  >  SRR4302535.1075458/1‑94 (MQ=60)

                                                                                           CGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGT  >  SRR4302535.3033149/1‑94 (MQ=60)

AACGCCGGAGCAGTCAAGCGCACCACGTACGGTGTGGTAACGAACACCCGGGAGGTCTTTAACACGACCGCCACGGATCAGGATCACGGAGTGCTCCTGCAGGTTGTGACCTTCACCACCGATGTAGGAAGTCACTTCGAAACCGTTAGTCAGACGAACACGGCATACTTTACGCAGCGCGGAGT  >  NC_000913/3471869‑3472053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`