Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,478,743 |
T→C |
D19G (GAC→GGC) |
yheR ← |
putative NAD(P)H oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,478,743 | 0 | T | C | 99.5%
| 602.4
/ ‑5.4
| 193 | D19G (GAC→GGC) | yheR | putative NAD(P)H oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (94/98); minor base G (1/0); total (95/98) |
| Fisher's exact test for biased strand distribution p-value = 4.92e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 201 total aligned reads displayed.
AAAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGTCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCGCT > NC_000913/3478653‑3478832
|
aaaaaaTCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGccc > 2:1424987/1‑93 (MQ=255)
aaaaaaTCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGccc > 1:1199191/1‑93 (MQ=255)
aaaaaaTCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGccc > 1:370276/1‑93 (MQ=255)
aaaTCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTga < 1:1371459/93‑1 (MQ=255)
aaaTCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTga < 2:2037276/93‑1 (MQ=255)
aaaTCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTga < 2:2336013/93‑1 (MQ=255)
aaTCGGGATAGTGCGCGTAAAGGTGGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTGGCCACCGAGCCCTgat > 1:3843492/1‑92 (MQ=255)
aTCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTgaga < 2:370784/93‑1 (MQ=255)
cGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGAtt > 2:1150155/1‑93 (MQ=255)
gggATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTc < 1:3237786/93‑1 (MQ=255)
gggATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTc < 2:1264103/93‑1 (MQ=255)
gATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCg < 2:4670398/93‑1 (MQ=255)
aTAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCgg > 1:1011043/1‑93 (MQ=255)
aTAGTGCGCGTAAAGGTCGTGCACGGTAACATTGATGAGCTGCGTGGCCGGTTTAAGCAGCACCCGGTTTGTTATCGAGCCCTGAGCttgcat > 2:521201/1‑89 (MQ=255)
tAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGa > 2:2234491/1‑93 (MQ=255)
tAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGa < 1:3526648/93‑1 (MQ=255)
tAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGa < 2:1786830/93‑1 (MQ=255)
tAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGa < 2:3342368/93‑1 (MQ=255)
gTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATg < 1:2980831/93‑1 (MQ=255)
ctGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATg > 1:2415961/2‑93 (MQ=255)
gcgTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCa > 1:4486523/1‑93 (MQ=255)
gcgTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCa > 2:2667522/1‑93 (MQ=255)
gTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATa > 2:4177273/1‑93 (MQ=255)
gTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATa < 2:387347/93‑1 (MQ=255)
gTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATa > 1:3469800/1‑93 (MQ=255)
gTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATa < 1:2779812/93‑1 (MQ=255)
gTAAAGGTCGTGCAAGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATa > 2:1722569/1‑93 (MQ=255)
tAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAc > 1:3970767/1‑93 (MQ=255)
aaaGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAca < 2:1631179/93‑1 (MQ=255)
aaaGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAca < 2:3717720/93‑1 (MQ=255)
aaaGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAca < 2:3558169/93‑1 (MQ=255)
aaaGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAca < 2:3961815/93‑1 (MQ=255)
aaGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTCCCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAcag < 1:2669834/93‑1 (MQ=255)
aaGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAcag < 1:1433547/93‑1 (MQ=255)
aGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAcagc > 2:1062456/1‑93 (MQ=255)
aGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAcagc > 1:227806/1‑93 (MQ=255)
aGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAcagc > 1:2332419/1‑93 (MQ=255)
aGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAcagc > 1:535972/1‑93 (MQ=255)
ggTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAcagca > 2:4343444/1‑93 (MQ=255)
gTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAcagcag > 2:812672/1‑93 (MQ=255)
tCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACagcagc > 1:4307347/1‑93 (MQ=255)
cGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAgcagca > 2:703650/1‑93 (MQ=255)
gCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCaaaa < 2:2602008/93‑1 (MQ=255)
aCGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACt > 1:44000/1‑93 (MQ=255)
aCGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACt > 1:4617662/1‑93 (MQ=255)
ggTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACttt > 1:4534956/1‑93 (MQ=255)
ggTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACttt > 1:499385/1‑93 (MQ=255)
ggTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACttt < 1:1867620/93‑1 (MQ=255)
ggTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACttt < 2:1993647/93‑1 (MQ=255)
gTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTc < 1:2245931/93‑1 (MQ=255)
gTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTc > 1:1239800/1‑93 (MQ=255)
aaCATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCgc > 1:714357/1‑93 (MQ=255)
aaCATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCgc < 1:2082499/93‑1 (MQ=255)
aaCATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCgc < 1:2121762/93‑1 (MQ=255)
aCATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCgct < 1:4687791/93‑1 (MQ=255)
aCATTGCTGAGCGGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCgct < 1:1671257/93‑1 (MQ=255)
cATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCgctg > 1:882943/1‑93 (MQ=255)
cATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCgctg > 2:4660658/1‑93 (MQ=255)
cATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCgctg > 1:1991015/1‑93 (MQ=255)
aTTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCgctgg > 1:777517/1‑93 (MQ=255)
aTTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCgctgg > 2:4111417/1‑93 (MQ=255)
ttGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCgctggc > 2:4568020/1‑93 (MQ=255)
ttGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTAgctggc > 2:1653276/1‑93 (MQ=255)
tGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCgctggct < 1:2523704/93‑1 (MQ=255)
cTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTga < 2:2147334/93‑1 (MQ=255)
cgAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCTCCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTgag < 2:2572860/92‑1 (MQ=255)
gAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTgaga < 1:56338/93‑1 (MQ=255)
aGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGAc > 1:1053461/1‑93 (MQ=255)
gCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGAca > 1:1941952/1‑93 (MQ=255)
gCGTGGCCGGTTTAAGCAGTCCCCGGTTTGCCGCCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGAcatca < 2:1349717/93‑1 (MQ=255)
gCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGAcatca < 1:4310978/93‑1 (MQ=255)
gTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACatcatc > 2:4601651/1‑93 (MQ=255)
cgcgTTTAAGCAGTACCCTGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATccccc < 2:370048/90‑1 (MQ=255)
ccGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATccccc < 1:1623416/93‑1 (MQ=255)
gTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTcc < 1:3037492/93‑1 (MQ=255)
gTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTcc > 1:3649247/1‑93 (MQ=255)
tttAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTccc < 2:3843011/93‑1 (MQ=255)
tttAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTccc > 2:284707/1‑93 (MQ=255)
aaGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGt < 2:825101/93‑1 (MQ=255)
aaGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGt > 2:2756356/1‑93 (MQ=255)
aGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTa > 2:2891410/1‑93 (MQ=255)
gCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTAt > 1:651193/1‑93 (MQ=255)
cAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATg < 1:3634816/93‑1 (MQ=255)
aCCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGttt > 1:3589116/1‑93 (MQ=255)
cccGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGtttt < 1:1293338/93‑1 (MQ=255)
cGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTtg < 2:721846/93‑1 (MQ=255)
gTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTtgtg > 2:3286520/1‑93 (MQ=255)
gTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTtgtg > 1:3420712/1‑93 (MQ=255)
tttGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTgtgt > 2:3457780/1‑93 (MQ=255)
tttGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTgtgt < 2:3922411/93‑1 (MQ=255)
tGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGtat < 1:366594/93‑1 (MQ=255)
tGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGtat > 2:1223008/1‑93 (MQ=255)
gCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGGCATCATCCCCCTCCCGGTATGGTTTTTGTGtata > 1:585655/1‑93 (MQ=255)
gCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGtata < 2:1901823/93‑1 (MQ=255)
cccGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTc < 1:3128900/92‑1 (MQ=255)
aCCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTc > 2:2518621/1‑93 (MQ=255)
ccGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCg > 1:3188884/1‑93 (MQ=255)
cGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCGc < 1:1108842/93‑1 (MQ=255)
cGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCGc < 1:4221175/93‑1 (MQ=255)
gAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCGCt < 1:2953908/93‑1 (MQ=255)
|
AAAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGTCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCGCT > NC_000913/3478653‑3478832
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATAAAAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGTCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCGCTGTT > NC_000913/3478650‑3478835
|
ATAAAAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGC > SRR4302535.1081479/1‑94 (MQ=60)
ATAAAAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGC > SRR4302535.1195837/1‑94 (MQ=60)
ATAAAAAAATCGGGATAGTGCGCGTAAAGGACGTGCACGGTAACATTGCTCAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGC > SRR4302535.2312175/1‑94 (MQ=60)
AAAAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGGCC > SRR4302535.4336895/1‑94 (MQ=60)
AAAAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCC > SRR4302535.372837/1‑94 (MQ=60)
AAAAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCC > SRR4302535.1207782/1‑94 (MQ=60)
AAAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCT > SRR4302535.475685/1‑94 (MQ=60)
AAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTG < SRR4302535.653997/94‑1 (MQ=60)
AAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTG < SRR4302535.118634/94‑1 (MQ=60)
AAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTG > SRR4302535.4578331/1‑94 (MQ=60)
AAATCGGGATAGTGCGCGTAAAGGTGGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTGGCCACCGAGCCCTGAT > SRR4302535.3869966/1‑94 (MQ=60)
AAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAG < SRR4302535.3756515/94‑1 (MQ=60)
AAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAG < SRR4302535.1381256/94‑1 (MQ=60)
AAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAG < SRR4302535.3632100/94‑1 (MQ=60)
AAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAG > SRR4302535.1028995/1‑94 (MQ=60)
GGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCC < SRR4302535.3260263/94‑1 (MQ=60)
GGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACACGGTTTGCCACCGAGCCCTGTGATTCT > SRR4302535.3594464/1‑94 (MQ=60)
GATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGG > SRR4302535.1018226/1‑94 (MQ=60)
GATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGG > SRR4302535.1538253/1‑94 (MQ=60)
ATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGA > SRR4302535.3674658/1‑94 (MQ=60)
TAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGAT > SRR4302535.996130/1‑94 (MQ=60)
TAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGAT < SRR4302535.3551135/94‑1 (MQ=60)
TAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGAT < SRR4302535.1269497/94‑1 (MQ=60)
ACTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATG > SRR4302535.2433352/1‑94 (MQ=60)
GTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGG < SRR4302535.3001740/94‑1 (MQ=60)
TGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGG < SRR4302535.227822/94‑1 (MQ=60)
CGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCA > SRR4302535.4517323/1‑94 (MQ=60)
GCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCAT > SRR4302535.429943/1‑94 (MQ=60)
CGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATA > SRR4302535.3493913/1‑94 (MQ=60)
GTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAC > SRR4302535.3997889/1‑94 (MQ=60)
GTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAC < SRR4302535.1224752/94‑1 (MQ=60)
GTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATAC < SRR4302535.2799603/94‑1 (MQ=60)
AAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAG > SRR4302535.4689576/1‑94 (MQ=60)
AAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAG < SRR4302535.2072240/94‑1 (MQ=60)
AAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTCCCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGC < SRR4302535.2688938/94‑1 (MQ=60)
AAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGC < SRR4302535.1443783/94‑1 (MQ=60)
AAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGC > SRR4302535.229372/1‑94 (MQ=60)
AAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGC > SRR4302535.539716/1‑94 (MQ=60)
AAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGC > SRR4302535.2349105/1‑94 (MQ=60)
AGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCA > SRR4302535.1112776/1‑94 (MQ=60)
AGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCA < SRR4302535.3710014/94‑1 (MQ=60)
AGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCA > SRR4302535.762391/1‑94 (MQ=60)
GTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGC > SRR4302535.4336812/1‑94 (MQ=60)
TGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAA < SRR4302535.4392280/94‑1 (MQ=60)
CACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACT > SRR4302535.44332/1‑94 (MQ=60)
CACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACT > SRR4302535.4649044/1‑94 (MQ=60)
ACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTT < SRR4302535.4243096/94‑1 (MQ=60)
ACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTT > SRR4302535.348786/1‑94 (MQ=60)
CGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTT > SRR4302535.4565987/1‑94 (MQ=60)
CGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTT > SRR4302535.502887/1‑94 (MQ=60)
GGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTC < SRR4302535.2192525/94‑1 (MQ=60)
GGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTC > SRR4302535.1248650/1‑94 (MQ=60)
GGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTC < SRR4302535.1881082/94‑1 (MQ=60)
GGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTC > SRR4302535.1653601/1‑94 (MQ=60)
GTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCG < SRR4302535.4514990/94‑1 (MQ=60)
GTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCG < SRR4302535.2261901/94‑1 (MQ=60)
TAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGC > SRR4302535.719373/1‑94 (MQ=60)
TAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCACTGAGCTTCCGGATGGGCATACAGCAGCAAAACTTTCGC > SRR4302535.1324840/1‑94 (MQ=60)
AACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCT < SRR4302535.2137061/94‑1 (MQ=60)
AACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCT < SRR4302535.2097501/94‑1 (MQ=60)
ACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTG < SRR4302535.4719646/94‑1 (MQ=60)
ACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTG > SRR4302535.889195/1‑94 (MQ=60)
ACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTG > SRR4302535.2005352/1‑94 (MQ=60)
ACATTGCTGAGCGGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTG < SRR4302535.1683356/94‑1 (MQ=60)
CATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGG > SRR4302535.782982/1‑94 (MQ=60)
CATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGG > SRR4302535.2364544/1‑94 (MQ=60)
TGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTG < SRR4302535.2541891/94‑1 (MQ=60)
CTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCGCCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAG < SRR4302535.1800327/94‑1 (MQ=60)
TGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGA > SRR4302535.671780/1‑94 (MQ=60)
GAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGAC < SRR4302535.56746/94‑1 (MQ=60)
GAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGAC > SRR4302535.1060953/1‑94 (MQ=60)
AGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACA > SRR4302535.1955939/1‑94 (MQ=60)
AGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACA > SRR4302535.3161450/1‑94 (MQ=60)
CTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATC > SRR4302535.2313284/1‑94 (MQ=60)
TGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCA < SRR4302535.514016/94‑1 (MQ=60)
TGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCA > SRR4302535.3328807/1‑94 (MQ=60)
GCTTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCAT < SRR4302535.305277/94‑1 (MQ=60)
GCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCAT < SRR4302535.4340468/94‑1 (MQ=60)
GCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCC < SRR4302535.4556161/94‑1 (MQ=60)
CCGGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCT < SRR4302535.1635136/94‑1 (MQ=60)
GGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCC > SRR4302535.3674513/1‑94 (MQ=60)
GGTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCC > SRR4302535.3899756/1‑94 (MQ=60)
GTTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCC < SRR4302535.3058771/94‑1 (MQ=60)
TTTAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCG < SRR4302535.2855767/94‑1 (MQ=60)
TAAGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGT > SRR4302535.584037/1‑94 (MQ=60)
AGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTAT < SRR4302535.2689234/94‑1 (MQ=60)
AGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTAT > SRR4302535.655736/1‑94 (MQ=60)
AGCAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTAT < SRR4302535.2002908/94‑1 (MQ=60)
ACAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATG < SRR4302535.2635724/94‑1 (MQ=60)
CAGTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGG < SRR4302535.3660003/94‑1 (MQ=60)
GTACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTT < SRR4302535.3214334/94‑1 (MQ=60)
TACCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTT > SRR4302535.3614014/1‑94 (MQ=60)
CCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTT < SRR4302535.2512834/94‑1 (MQ=60)
CCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTT > SRR4302535.1888801/1‑94 (MQ=60)
CCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTT > SRR4302535.3082284/1‑94 (MQ=60)
CCCGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTT < SRR4302535.1302554/94‑1 (MQ=60)
CGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGT > SRR4302535.552044/1‑94 (MQ=60)
CGGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGT < SRR4302535.3668538/94‑1 (MQ=60)
GGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTG < SRR4302535.1383874/94‑1 (MQ=60)
GGTTTGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTG > SRR4302535.3444502/1‑94 (MQ=60)
TGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGGCATCATCCCCCTCCCGGTATGGTTTTTGTGTATA > SRR4302535.589759/1‑94 (MQ=60)
TGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATA < SRR4302535.2990866/94‑1 (MQ=60)
TGCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATA < SRR4302535.369122/94‑1 (MQ=60)
GCCACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAG < SRR4302535.210411/94‑1 (MQ=60)
CCCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCG < SRR4302535.3505294/94‑1 (MQ=60)
CCCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCG < SRR4302535.3150690/94‑1 (MQ=60)
ACCGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCG > SRR4302535.3210935/1‑94 (MQ=60)
CGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCGCT < SRR4302535.4250060/94‑1 (MQ=60)
CGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCGCT < SRR4302535.853447/94‑1 (MQ=60)
CGAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCGCT < SRR4302535.1116762/94‑1 (MQ=60)
GAGCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCGCTG < SRR4302535.2974658/94‑1 (MQ=60)
GCCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCGCTGTT > SRR4302535.2228377/1‑94 (MQ=60)
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ATAAAAAAATCGGGATAGTGCGCGTAAAGGTCGTGCACGGTAACATTGCTGAGCTGCGTGGCCGGTTTAAGCAGTACCCGGTTTGCCACCGAGTCCTGAGATTCCGGATGGGCATACAGCAGCAAAACTTTCGCTGGCTGAGACATCATCCCCCTCCCGGTATGGTTTTTGTGTATAGTCGCTGTT > NC_000913/3478650‑3478835
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
