Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,489,264 |
C→T |
intergenic (‑7/+98) |
yhfG ← / ← ppiA |
hypothetical protein/peptidyl‑prolyl cis‑trans isomerase A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,489,264 | 0 | C | T | 100.0%
| 706.7
/ NA
| 195 | intergenic (‑7/+98) | yhfG/ppiA | hypothetical protein/peptidyl‑prolyl cis‑trans isomerase A |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (97/98); total (97/98) |
Only 100 of 202 total aligned reads displayed.
TTCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGCCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCCGCGC > NC_000913/3489174‑3489352
|
ttCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCt > 1:2976683/1‑93 (MQ=255)
tCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGtctc > 1:578126/1‑93 (MQ=255)
tCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGtctc < 1:3937951/93‑1 (MQ=255)
cAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTcc < 2:870145/93‑1 (MQ=255)
aaGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTccc < 1:2472242/93‑1 (MQ=255)
aaGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTccc < 2:3522838/93‑1 (MQ=255)
aaGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTccc < 1:1544166/93‑1 (MQ=255)
aGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCt > 1:3725964/1‑93 (MQ=255)
aGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCt > 2:1921363/1‑93 (MQ=255)
aGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCt > 1:2654571/1‑93 (MQ=255)
aCGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGa < 1:3430323/93‑1 (MQ=255)
aCGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGa > 2:602762/1‑93 (MQ=255)
cGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGaa < 1:557969/93‑1 (MQ=255)
cGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGaa < 1:4359739/93‑1 (MQ=255)
cGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGaa < 1:2534741/93‑1 (MQ=255)
ggCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAAc < 1:4385109/93‑1 (MQ=255)
gACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACgtg > 1:4336729/1‑93 (MQ=255)
gACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACgtg < 2:3191036/93‑1 (MQ=255)
tGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGCACGTGTcc > 2:2095057/1‑93 (MQ=255)
ggCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCa < 1:2714640/93‑1 (MQ=255)
ccTGAAAATTACGAGTACGCTGAAGCTCCCAGAGACGGGACTTTTGATTAGCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCAtt < 2:1561123/93‑1 (MQ=255)
cTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCAttt < 2:451564/93‑1 (MQ=255)
cTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCAttt < 2:3072087/93‑1 (MQ=255)
cTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCAttt > 2:1237375/1‑93 (MQ=255)
cTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCAttt < 1:1909841/93‑1 (MQ=255)
cTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCAttt > 2:167072/1‑93 (MQ=255)
gAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGGTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGc > 2:2152790/1‑93 (MQ=255)
aaaTTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCca > 1:2117288/1‑93 (MQ=255)
aaTTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTCATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCcac > 1:2512026/1‑93 (MQ=255)
attacgattacgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCcaca > 1:3831671/1‑93 (MQ=255)
ttacgattacgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACaa < 2:1820721/93‑1 (MQ=255)
ttacgattacgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACaa < 2:3287799/93‑1 (MQ=255)
ttacgattacgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACaa < 2:3487903/93‑1 (MQ=255)
attacgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGtata < 2:3674930/93‑1 (MQ=255)
attacgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGtata < 1:455118/93‑1 (MQ=255)
ttacgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATaa > 1:726241/1‑93 (MQ=255)
ttacgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATaa < 2:512223/93‑1 (MQ=255)
ttacgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATaa < 2:4575552/93‑1 (MQ=255)
ttacgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATaa > 1:85770/1‑93 (MQ=255)
tacgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAg < 2:2830660/93‑1 (MQ=255)
acgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGc < 1:3254018/93‑1 (MQ=255)
acgCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGc < 2:4414806/93‑1 (MQ=255)
aaGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCaaa < 2:2972307/93‑1 (MQ=255)
aGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAAt < 1:1022939/93‑1 (MQ=255)
aGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAAt < 2:3725998/93‑1 (MQ=255)
gCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATc < 1:1240070/93‑1 (MQ=255)
tCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCg > 2:3835205/1‑93 (MQ=255)
tCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCg > 1:2907931/1‑93 (MQ=255)
tCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCg > 2:2660714/1‑93 (MQ=255)
cccAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCgg < 1:2274749/93‑1 (MQ=255)
cccAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCgg < 2:1342003/93‑1 (MQ=255)
cccAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCgg < 1:1554470/93‑1 (MQ=255)
ccAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCggg > 1:1435992/1‑93 (MQ=255)
ccAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCggg > 1:4108036/1‑93 (MQ=255)
ccAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCggg < 2:2534906/93‑1 (MQ=255)
cAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGt < 1:3998852/93‑1 (MQ=255)
gagaCGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTa > 2:1397452/1‑93 (MQ=255)
gagaCGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTa > 2:3332669/1‑93 (MQ=255)
gagaCGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTa > 2:2388098/1‑93 (MQ=255)
gagaCGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTa > 2:4187683/1‑93 (MQ=255)
agaCGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTAc < 1:3233786/93‑1 (MQ=255)
aCGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTGACGc > 1:1861407/1‑93 (MQ=255)
gggACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCg < 1:978454/93‑1 (MQ=255)
ggACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGTGGCAAATCCGGGCTACGCCgg > 2:2894893/1‑93 (MQ=255)
ggACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCgg < 1:1096539/93‑1 (MQ=255)
ggACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCgg > 1:886681/1‑93 (MQ=255)
gACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCggg > 1:820046/1‑93 (MQ=255)
aCTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGga < 2:4121533/93‑1 (MQ=255)
aCTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGga < 2:3999680/93‑1 (MQ=255)
aCTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGga > 1:1747925/1‑93 (MQ=255)
cTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGgag > 1:3565486/1‑93 (MQ=255)
ttttGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGgaga > 1:2576185/1‑93 (MQ=255)
ttttGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGgaga < 2:186279/93‑1 (MQ=255)
ttGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGc < 2:665966/93‑1 (MQ=255)
ttGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGc > 2:3812906/1‑93 (MQ=255)
tGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCa < 2:3003998/93‑1 (MQ=255)
ttATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGaa < 2:71988/93‑1 (MQ=255)
tATCTGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAg < 2:1117943/93‑1 (MQ=255)
tATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAg < 1:2848742/93‑1 (MQ=255)
aTCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAgc > 2:1889433/1‑93 (MQ=255)
tCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAgcg > 1:1635263/1‑93 (MQ=255)
tCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAgcg > 1:1593857/1‑93 (MQ=255)
tCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAgcg < 2:2767062/93‑1 (MQ=255)
tCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAgcg > 1:4031422/1‑93 (MQ=255)
ggTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGcgcg > 2:1418332/1‑93 (MQ=255)
ggTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGcgcg < 1:4668667/93‑1 (MQ=255)
gTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCgg < 1:3075160/93‑1 (MQ=255)
tGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGAggg > 2:1255643/1‑93 (MQ=255)
gTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCCCAAGAATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGaaa > 1:3121863/1‑93 (MQ=255)
gTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCaa > 1:3902698/1‑93 (MQ=255)
ttcttcACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGa < 1:1231060/93‑1 (MQ=255)
cttcACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGGGGGCAAGaat > 1:4173723/1‑91 (MQ=255)
cttcACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGAtt < 1:4628999/93‑1 (MQ=255)
cACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTggc > 2:322255/1‑91 (MQ=255)
cACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGcc < 1:4513370/93‑1 (MQ=255)
aCTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGccc > 1:1828031/1‑93 (MQ=255)
cTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCcg > 1:4148789/1‑93 (MQ=255)
cTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCcg < 1:2069081/93‑1 (MQ=255)
ttGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCcgc < 1:715988/93‑1 (MQ=255)
ttGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGACcgc > 2:3877609/1‑93 (MQ=255)
|
TTCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGCCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCCGCGC > NC_000913/3489174‑3489352
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCTTCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGCCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCCGCGCGAGA > NC_000913/3489171‑3489356
|
GCCTTCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGATGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGT < SRR4302535.4707054/94‑1 (MQ=60)
CCTTCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTC > SRR4302535.3087075/1‑94 (MQ=60)
CTTCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCT > SRR4302535.2997567/1‑94 (MQ=60)
CTTCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCT < SRR4302535.1406185/94‑1 (MQ=60)
TTCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTC > SRR4302535.582186/1‑94 (MQ=60)
TCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCC < SRR4302535.3964825/94‑1 (MQ=60)
TCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCC < SRR4302535.1290448/94‑1 (MQ=60)
CAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCC < SRR4302535.1954839/94‑1 (MQ=60)
AAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCT > SRR4302535.2673591/1‑94 (MQ=60)
AAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCT > SRR4302535.3751778/1‑94 (MQ=60)
AAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCT < SRR4302535.1555291/94‑1 (MQ=60)
AAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCT < SRR4302535.2490066/94‑1 (MQ=60)
GACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGA > SRR4302535.1557284/1‑94 (MQ=60)
AACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTTCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGA < SRR4302535.570017/94‑1 (MQ=60)
ACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAA < SRR4302535.3454163/94‑1 (MQ=60)
CGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAAC < SRR4302535.4389580/94‑1 (MQ=60)
CGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAAC < SRR4302535.2552999/94‑1 (MQ=60)
CGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAAC < SRR4302535.561874/94‑1 (MQ=60)
GGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACG < SRR4302535.4415110/94‑1 (MQ=60)
CGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTG > SRR4302535.4366796/1‑94 (MQ=60)
CGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTG > SRR4302535.4366391/1‑94 (MQ=60)
GACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGT > SRR4302535.638343/1‑94 (MQ=60)
GGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCAT < SRR4302535.2734033/94‑1 (MQ=60)
CCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTT < SRR4302535.1848778/94‑1 (MQ=60)
CCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTT > SRR4302535.3262560/1‑94 (MQ=60)
CTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTG < SRR4302535.1923608/94‑1 (MQ=60)
CTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTG < SRR4302535.4608527/94‑1 (MQ=60)
GAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCC > SRR4302535.1094613/1‑94 (MQ=60)
AAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCA > SRR4302535.2132562/1‑94 (MQ=60)
AAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTCATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCAC > SRR4302535.2530135/1‑94 (MQ=60)
AATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACA > SRR4302535.3858093/1‑94 (MQ=60)
AATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACA > SRR4302535.509016/1‑94 (MQ=60)
AATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACA > SRR4302535.382316/1‑94 (MQ=60)
ATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAA > SRR4302535.4154937/1‑94 (MQ=60)
TTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAG > SRR4302535.732750/1‑94 (MQ=60)
ACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTA < SRR4302535.1721092/94‑1 (MQ=60)
CGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTAT < SRR4302535.4031378/94‑1 (MQ=60)
GATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATA < SRR4302535.878328/94‑1 (MQ=60)
GATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATA > SRR4302535.3985770/1‑94 (MQ=60)
GATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATA > SRR4302535.1798007/1‑94 (MQ=60)
GATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATA < SRR4302535.1248087/94‑1 (MQ=60)
ATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAA > SRR4302535.731341/1‑94 (MQ=60)
ATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAA < SRR4302535.458303/94‑1 (MQ=60)
ATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAA > SRR4302535.86372/1‑94 (MQ=60)
TTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAG < SRR4302535.1475963/94‑1 (MQ=60)
TTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAG < SRR4302535.2563682/94‑1 (MQ=60)
TCGCTGAAGCTCCCAGAGACGTGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCG < SRR4302535.4666386/94‑1 (MQ=60)
ACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCG < SRR4302535.3276626/94‑1 (MQ=60)
ACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCG < SRR4302535.4402200/94‑1 (MQ=60)
CGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGG < SRR4302535.4186817/94‑1 (MQ=60)
GCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGC > SRR4302535.3291514/1‑94 (MQ=60)
CTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCA > SRR4302535.4060583/1‑94 (MQ=60)
TGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAA > SRR4302535.920491/1‑94 (MQ=60)
GAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAA > SRR4302535.3898951/1‑94 (MQ=60)
AAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAAT < SRR4302535.2205119/94‑1 (MQ=60)
AGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATC < SRR4302535.1030204/94‑1 (MQ=60)
AGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATC > SRR4302535.2942590/1‑94 (MQ=60)
GCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCC < SRR4302535.1248922/94‑1 (MQ=60)
GCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCC < SRR4302535.730437/94‑1 (MQ=60)
CTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCG > SRR4302535.2928484/1‑94 (MQ=60)
CTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCG > SRR4302535.2501101/1‑94 (MQ=60)
CCCAGCGACGGGACTTTTGCTTATCGGTGAGCTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGG > SRR4302535.1110887/1‑94 (MQ=60)
CCCAGAGACGGGTCTTTTGCTTATCGGTGAGTTTCTTCGCTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGG < SRR4302535.2801324/94‑1 (MQ=60)
CCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGG < SRR4302535.2290983/94‑1 (MQ=60)
CCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGG < SRR4302535.1565672/94‑1 (MQ=60)
CCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGG > SRR4302535.1446253/1‑94 (MQ=60)
CCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGG > SRR4302535.4136163/1‑94 (MQ=60)
CAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTT < SRR4302535.4026211/94‑1 (MQ=60)
AGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACG < SRR4302535.3256226/94‑1 (MQ=60)
GACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTGACGC > SRR4302535.1874830/1‑94 (MQ=60)
CGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCG < SRR4302535.1588858/94‑1 (MQ=60)
CGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCG > SRR4302535.3941152/1‑94 (MQ=60)
GGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGG > SRR4302535.892961/1‑94 (MQ=60)
GGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGG > SRR4302535.3213919/1‑94 (MQ=60)
GGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGG < SRR4302535.985412/94‑1 (MQ=60)
GGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGG > SRR4302535.4313704/1‑94 (MQ=60)
GGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGG > SRR4302535.825801/1‑94 (MQ=60)
GGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGG < SRR4302535.2611091/94‑1 (MQ=60)
GGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGG > SRR4302535.728925/1‑94 (MQ=60)
GGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGG < SRR4302535.1104344/94‑1 (MQ=60)
GACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGA > SRR4302535.1760569/1‑94 (MQ=60)
ACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAG > SRR4302535.3590209/1‑94 (MQ=60)
CTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGA > SRR4302535.4551077/1‑94 (MQ=60)
CTTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGA > SRR4302535.2594700/1‑94 (MQ=60)
TTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAG > SRR4302535.2926609/1‑94 (MQ=60)
TTTTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGCATAAGCGGCAAATCCGGGTTACGCCGGGAGAG < SRR4302535.2538863/94‑1 (MQ=60)
TTGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCA > SRR4302535.4530546/1‑94 (MQ=60)
TGCTTATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAG < SRR4302535.162129/94‑1 (MQ=60)
CTTATCGGAGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGATACGCCGGGAGAGCAGAA > SRR4302535.2314710/1‑94 (MQ=60)
TATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGC < SRR4302535.2868929/94‑1 (MQ=60)
ATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCG > SRR4302535.1605358/1‑94 (MQ=60)
ATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCG > SRR4302535.1647079/1‑94 (MQ=60)
ATCGGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCG > SRR4302535.4059001/1‑94 (MQ=60)
GGTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGG < SRR4302535.4700210/94‑1 (MQ=60)
GTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGG < SRR4302535.3096619/94‑1 (MQ=60)
GTGAGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGG < SRR4302535.2104622/94‑1 (MQ=60)
AGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCCCAAGAATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGAAA > SRR4302535.3143604/1‑94 (MQ=60)
AGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGgggggga > SRR4302535.1914076/1‑87 (MQ=60)
AGTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAA > SRR4302535.3929434/1‑94 (MQ=60)
GTTTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGtgcggcca > SRR4302535.1074148/1‑86 (MQ=60)
TTCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGAT < SRR4302535.1239862/94‑1 (MQ=60)
TCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGGGGGCAAGAAT > SRR4302535.4202290/1‑94 (MQ=60)
TCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATT < SRR4302535.2711436/94‑1 (MQ=60)
TCTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATT > SRR4302535.3098111/1‑94 (MQ=60)
CTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGggggggggaggt > SRR4302535.818494/1‑82 (MQ=60)
CTTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTG < SRR4302535.4660414/94‑1 (MQ=60)
TTCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTCC > SRR4302535.3677479/1‑94 (MQ=60)
TCACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGAAGAAGCGCGGGCAAGATTGCC < SRR4302535.3490749/94‑1 (MQ=60)
CACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGgggggaaggatgacc > SRR4302535.3534846/1‑79 (MQ=60)
CACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCC < SRR4302535.4544319/94‑1 (MQ=60)
CACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCC > SRR4302535.1841231/1‑94 (MQ=60)
ACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGggggggaagatggccc > SRR4302535.861677/1‑78 (MQ=60)
ACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGgggggcaaaatacccg > SRR4302535.3608854/1‑78 (MQ=60)
ACTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCCG > SRR4302535.4177194/1‑94 (MQ=60)
CTTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCCGC < SRR4302535.2083995/94‑1 (MQ=60)
TTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCCGCG < SRR4302535.721019/94‑1 (MQ=60)
TTGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCCGCG < SRR4302535.98955/94‑1 (MQ=60)
TGATGTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGGAAGAATGCCCCCGC > SRR4302535.304291/1‑94 (MQ=60)
GTCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGCGCAAGAATGCCCGCGCcagc > SRR4302535.297352/1‑90 (MQ=60)
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GCCTTCAAGACGGCGACTGGCCTGAAAATTACGATTACGCTGAAGCTCCCAGAGACGGGACTTTTGCTTATCGGTGAGTTTCTTCACTTGATGCCTCCCTGAACGTGTCCATTTGCCACAAGTATAAGCGGCAAATCCGGGTTACGCCGGGAGAGCAGAAGCGCGGGCAAGATTGCCCGCGCGAGA > NC_000913/3489171‑3489356
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
