Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,609,489 |
A→G |
intergenic (‑83/‑7) |
yhhS ← / → b3474 |
putative transport/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,609,489 | 0 | A | G | 99.4%
| 550.1
/ ‑4.8
| 177 | intergenic (‑83/‑7) | yhhS/b3474 | putative transport/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (89/87); total (89/88) |
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01 |
Only 100 of 186 total aligned reads displayed.
TTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCA > NC_000913/3609399‑3609578
|
tttACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGc < 1:728887/93‑1 (MQ=255)
tttACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGc < 2:2921750/93‑1 (MQ=255)
tttACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGc > 1:1275614/1‑93 (MQ=255)
tACCACGTGCTGACGTGAAAATCAGCAGCAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGccc < 2:132047/93‑1 (MQ=255)
ccACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCa > 2:4206288/1‑93 (MQ=255)
cACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCaa < 2:3046049/93‑1 (MQ=255)
aggTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAAt < 1:1836301/91‑1 (MQ=255)
aCGTGCTGACGTTAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAAt < 1:657271/93‑1 (MQ=255)
aCGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAAt > 1:633340/1‑93 (MQ=255)
cGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATg > 1:4065318/1‑93 (MQ=255)
gTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATgg > 1:2972949/1‑93 (MQ=255)
gTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATgg > 1:971615/1‑93 (MQ=255)
tGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGa > 1:487663/1‑93 (MQ=255)
cTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCTTGACTCCGGCTACCCTTAATACAAAAAGTCACAAGGAGGCCCCAATGGaaa < 2:3644448/93‑1 (MQ=255)
cTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGaaa < 1:2778743/93‑1 (MQ=255)
cTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGaaa > 2:1796673/1‑93 (MQ=255)
tGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAAc < 1:4325584/93‑1 (MQ=255)
gACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAAcc > 2:3909400/1‑93 (MQ=255)
gACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAAcc < 1:3181593/93‑1 (MQ=255)
cGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAAcccc < 1:4532218/93‑1 (MQ=255)
gTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCt > 2:3541887/1‑93 (MQ=255)
gAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCa < 2:2128389/93‑1 (MQ=255)
gAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCa > 2:2724635/1‑93 (MQ=255)
aaaaTCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCaa < 2:4473690/93‑1 (MQ=255)
aaaTCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAAc < 2:3198622/93‑1 (MQ=255)
tCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCg > 2:2421879/1‑93 (MQ=255)
tCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCg > 2:2526416/1‑93 (MQ=255)
tCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCg < 2:4622925/93‑1 (MQ=255)
agcagTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGAt < 2:1220680/93‑1 (MQ=255)
gTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAATGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATaaaa < 1:3306546/93‑1 (MQ=255)
gTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATaaaa < 1:806691/93‑1 (MQ=255)
gTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATaaaa < 1:1068551/93‑1 (MQ=255)
gTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATaaaa > 2:656421/1‑93 (MQ=255)
atAAGAATCAGAATATTGCTGGCGTAACTCCCGCTACACTTAATACAAAAAGCCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATaaaa < 2:3974734/92‑1 (MQ=255)
tAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAAc < 2:2520786/93‑1 (MQ=255)
aaGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACg < 1:4644063/93‑1 (MQ=255)
aGAAGCAGAATATTGCCGGCGGCCCTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACgg < 1:1026883/93‑1 (MQ=255)
aTCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCa < 1:1864584/93‑1 (MQ=255)
aTCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCa > 1:2532343/1‑93 (MQ=255)
aTCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCa < 1:3556837/93‑1 (MQ=255)
aTCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCa > 2:1433529/1‑93 (MQ=255)
aGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAATCCCCTCAACCCGATAAAACGGGCATGc < 2:1869142/93‑1 (MQ=255)
gAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGca > 1:3591272/1‑93 (MQ=255)
atatTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGcaca > 1:1566100/1‑93 (MQ=255)
atatTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGcaca < 1:2717752/93‑1 (MQ=255)
atatTCCTGGCGTGACTCCCGCTACACTTAATACAACAAGTCACAAGGAGGCCCCACTGGCAAGCCCTCCACACGATAAACCGGGCATGcaca > 2:3697835/1‑93 (MQ=255)
tatTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACAt < 1:4432144/93‑1 (MQ=255)
tatTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACAt < 1:789311/93‑1 (MQ=255)
atTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACAtt < 2:4226665/93‑1 (MQ=255)
ttGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTc > 1:1244999/1‑93 (MQ=255)
ttGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTc > 1:2541669/1‑93 (MQ=255)
tGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCt < 1:578873/93‑1 (MQ=255)
gtGGCGGGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGc < 2:1220688/92‑1 (MQ=255)
cGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCaa < 1:2118187/93‑1 (MQ=255)
gTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAg < 2:2372813/93‑1 (MQ=255)
tGACGCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGc < 2:886017/93‑1 (MQ=255)
aCTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTg > 1:1713962/1‑93 (MQ=255)
cTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTgg > 1:3961414/1‑93 (MQ=255)
actcGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAATCCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGc < 1:3648208/90‑1 (MQ=255)
cccGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGcc < 1:1452613/93‑1 (MQ=255)
cccGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGcc > 2:152868/1‑93 (MQ=255)
ccGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCt > 2:3131919/1‑93 (MQ=255)
ccGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCt > 2:2904377/1‑93 (MQ=255)
gCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCg > 1:4259703/1‑93 (MQ=255)
gCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCg > 1:3346521/1‑93 (MQ=255)
tACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCt > 2:1891398/1‑93 (MQ=255)
tACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCt > 2:2198877/1‑93 (MQ=255)
tACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCt > 1:4573548/1‑93 (MQ=255)
acacTTAATACAAAAAGTCACAAGGAGGCCCTAATGGAACCCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTg < 2:4102434/93‑1 (MQ=255)
acacTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTg > 1:1728310/1‑93 (MQ=255)
acacTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTg < 2:3155770/93‑1 (MQ=255)
cacTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTgg < 1:2388838/93‑1 (MQ=255)
acTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGt > 1:2211232/1‑93 (MQ=255)
cTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTa < 1:4301090/93‑1 (MQ=255)
ttAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAg < 1:4399556/93‑1 (MQ=255)
ttAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAg > 1:218617/1‑93 (MQ=255)
ttAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAg > 1:3826503/1‑93 (MQ=255)
tAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGt > 2:3274768/1‑93 (MQ=255)
tAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGt < 2:348680/93‑1 (MQ=255)
tAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGt > 2:944125/1‑93 (MQ=255)
tAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGt > 1:2266810/1‑93 (MQ=255)
tACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGAt > 1:2402007/1‑93 (MQ=255)
aaCAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGAt < 2:2785201/92‑1 (MQ=255)
aCAAAAAGTCACAAGGAGGCCCCAATGGAAACCCGTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATc < 1:110414/93‑1 (MQ=255)
cAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAATCGGGCATGCCCATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATcc < 1:343165/93‑1 (MQ=255)
aaaaaGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCt < 1:4242083/93‑1 (MQ=255)
aaaaaGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCt > 2:4221123/1‑93 (MQ=255)
aGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTcgcg > 2:55876/1‑93 (MQ=255)
gTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCgg > 1:1362435/1‑93 (MQ=255)
tCACAAGGAGGCCCCAATGGAAGCCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCggg < 2:1358122/93‑1 (MQ=255)
cacaAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGc > 1:2628175/1‑93 (MQ=255)
caAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCAt < 1:215264/93‑1 (MQ=255)
caAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCAt > 2:2586455/1‑93 (MQ=255)
aaGGAGGCCCCAATGGAACCCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCAtt < 2:4051052/93‑1 (MQ=255)
aaGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCAtt > 1:4189684/1‑93 (MQ=255)
aaGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCAtt > 2:2069752/1‑93 (MQ=255)
aggaggCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTc > 2:115237/1‑93 (MQ=255)
ggAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCa < 1:3909400/93‑1 (MQ=255)
ggAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCa < 1:1417670/93‑1 (MQ=255)
ggAAGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCa < 1:192959/93‑1 (MQ=255)
|
TTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCA > NC_000913/3609399‑3609578
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGC > NC_000913/3609396‑3609581
|
ATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAG > SRR4302535.2254222/1‑94 (MQ=60)
TTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGG < SRR4302535.4201145/94‑1 (MQ=60)
TTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGC < SRR4302535.389499/94‑1 (MQ=60)
TTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGC > SRR4302535.1284722/1‑94 (MQ=60)
TTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCC < SRR4302535.734000/94‑1 (MQ=60)
TTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCC > SRR4302535.1406561/1‑94 (MQ=60)
TACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCC > SRR4302535.3568277/1‑94 (MQ=60)
CACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAAT > SRR4302535.637754/1‑94 (MQ=60)
AGGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATG < SRR4302535.1849547/94‑1 (MQ=60)
ACGTGCTGACGTTAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATG < SRR4302535.661856/94‑1 (MQ=60)
ACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATG < SRR4302535.2466820/94‑1 (MQ=60)
ACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATG < SRR4302535.2180128/94‑1 (MQ=60)
ACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATG > SRR4302535.4093134/1‑94 (MQ=60)
CGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGG < SRR4302535.4600141/94‑1 (MQ=60)
CGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGG > SRR4302535.978510/1‑94 (MQ=60)
CGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGG > SRR4302535.2993816/1‑94 (MQ=60)
GTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGA > SRR4302535.491082/1‑94 (MQ=60)
TGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAA > SRR4302535.783936/1‑94 (MQ=60)
CTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAAC < SRR4302535.2798528/94‑1 (MQ=60)
TGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACC < SRR4302535.676931/94‑1 (MQ=60)
TGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACC < SRR4302535.4355165/94‑1 (MQ=60)
TGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAACGGAAACC > SRR4302535.1788819/1‑94 (MQ=60)
GACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCC < SRR4302535.3203582/94‑1 (MQ=60)
CGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCT < SRR4302535.1856120/94‑1 (MQ=60)
CGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCT > SRR4302535.1905848/1‑94 (MQ=60)
CGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCT < SRR4302535.4563238/94‑1 (MQ=60)
CGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCT < SRR4302535.2394789/94‑1 (MQ=60)
TGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCA < SRR4302535.1353871/94‑1 (MQ=60)
GAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAA < SRR4302535.3824463/94‑1 (MQ=60)
AAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAAC < SRR4302535.4271230/94‑1 (MQ=60)
AAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAAC > SRR4302535.4479919/1‑94 (MQ=60)
AAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACC < SRR4302535.3371626/94‑1 (MQ=60)
CAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGAT > SRR4302535.4698908/1‑94 (MQ=60)
CAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGAT > SRR4302535.3114829/1‑94 (MQ=60)
AGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATA > SRR4302535.2602175/1‑94 (MQ=60)
GCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAA < SRR4302535.3860380/94‑1 (MQ=60)
CAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAA > SRR4302535.1195293/1‑94 (MQ=60)
AGTAAGAATCACAATATTGCTGGCGGCACTCCCTCCACACTTAATACAAAAAGTCACAAGGAGTCCCCAATGGAAACCCCTCAACCCGATAAAA < SRR4302535.1139990/94‑1 (MQ=60)
GTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAATGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAAC < SRR4302535.3329554/94‑1 (MQ=60)
GTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAAC < SRR4302535.1076148/94‑1 (MQ=60)
GTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAAC < SRR4302535.812349/94‑1 (MQ=60)
GTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAAC < SRR4302535.1440915/94‑1 (MQ=60)
TAAAAATCAGAATATTGCTGGCGTGCCTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACG < SRR4302535.1733157/94‑1 (MQ=60)
AAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGG < SRR4302535.4675539/94‑1 (MQ=60)
AGAAGCAGAATATTGCCGGCGGCCCTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGG < SRR4302535.1034175/94‑1 (MQ=60)
GAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGC < SRR4302535.4325308/94‑1 (MQ=60)
AATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCA > SRR4302535.2550589/1‑94 (MQ=60)
AATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCA < SRR4302535.2653408/94‑1 (MQ=60)
ATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCAT < SRR4302535.3581508/94‑1 (MQ=60)
ATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCAT < SRR4302535.1878028/94‑1 (MQ=60)
TCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATG < SRR4302535.2877870/94‑1 (MQ=60)
TCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATG < SRR4302535.2216833/94‑1 (MQ=60)
CAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGC > SRR4302535.402105/1‑94 (MQ=60)
AGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCA > SRR4302535.3616182/1‑94 (MQ=60)
AATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACT > SRR4302535.587392/1‑94 (MQ=60)
AATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACA > SRR4302535.1577404/1‑94 (MQ=60)
AATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACA > SRR4302535.1266825/1‑94 (MQ=60)
AATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACA > SRR4302535.4164448/1‑94 (MQ=60)
ATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACAT < SRR4302535.2737162/94‑1 (MQ=60)
ATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACAT < SRR4302535.278683/94‑1 (MQ=60)
ATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACAT < SRR4302535.797413/94‑1 (MQ=60)
TATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACTAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATT > SRR4302535.3329306/1‑94 (MQ=60)
TATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATT > SRR4302535.422413/1‑94 (MQ=60)
TATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATT < SRR4302535.794852/94‑1 (MQ=60)
TATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATT < SRR4302535.4462514/94‑1 (MQ=60)
ATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTC > SRR4302535.1253881/1‑94 (MQ=60)
ATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTC > SRR4302535.2559976/1‑94 (MQ=60)
ATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACAGGCCTGCACATTT > SRR4302535.4342206/1‑94 (MQ=60)
TGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTG < SRR4302535.582941/94‑1 (MQ=60)
CGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAG < SRR4302535.2133466/94‑1 (MQ=60)
GACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTG > SRR4302535.1726355/1‑94 (MQ=60)
ACTCCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGG > SRR4302535.3988467/1‑94 (MQ=60)
actCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAATCCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCC < SRR4302535.3673468/91‑1 (MQ=60)
CCCGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCT < SRR4302535.1463009/94‑1 (MQ=60)
CGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCG > SRR4302535.3369835/1‑94 (MQ=60)
CGCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCG > SRR4302535.4288878/1‑94 (MQ=60)
GCTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGC < SRR4302535.2111770/94‑1 (MQ=60)
CTACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCT > SRR4302535.4604724/1‑94 (MQ=60)
TACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTG > SRR4302535.537245/1‑94 (MQ=60)
TACACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTG > SRR4302535.1740801/1‑94 (MQ=60)
CACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGT > SRR4302535.2226984/1‑94 (MQ=60)
CACTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGT < SRR4302535.2406010/94‑1 (MQ=60)
CTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAG < SRR4302535.4330520/94‑1 (MQ=60)
CTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAG > SRR4302535.3852902/1‑94 (MQ=60)
CTTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAG > SRR4302535.220120/1‑94 (MQ=60)
TTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGT < SRR4302535.4429669/94‑1 (MQ=60)
TTAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGT > SRR4302535.2282966/1‑94 (MQ=60)
TAATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTG > SRR4302535.1083111/1‑94 (MQ=60)
AATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGA > SRR4302535.3592430/1‑94 (MQ=60)
ATACAAAACGTCACAAGGAGGCCCCAATGAAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGAT < SRR4302535.832698/94‑1 (MQ=60)
ATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGAT > SRR4302535.2419285/1‑94 (MQ=60)
ATACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGACTCGCTGGTAGTGAT > SRR4302535.4634025/1‑94 (MQ=60)
TACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATC > SRR4302535.3618073/1‑94 (MQ=60)
AACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATC < SRR4302535.1652893/94‑1 (MQ=60)
ACAAAAAGTCACAAGGAGGCCCCAATGGAAACCCGTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCC < SRR4302535.111194/94‑1 (MQ=60)
CAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAATCGGGCATGCCCATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCT < SRR4302535.345537/94‑1 (MQ=60)
CAAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCT < SRR4302535.2417266/94‑1 (MQ=60)
AAAAAGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTC < SRR4302535.4271119/94‑1 (MQ=60)
AGTCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGG > SRR4302535.1372179/1‑94 (MQ=60)
TCACAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGC > SRR4302535.2647007/1‑94 (MQ=60)
caAAGGAGGCCCCAAAGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCAT < SRR4302535.4458244/92‑1 (MQ=60)
CAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATT > SRR4302535.4218360/1‑94 (MQ=60)
CAAGGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATT < SRR4302535.216739/94‑1 (MQ=60)
AGGAGGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCA < SRR4302535.2237381/94‑1 (MQ=60)
GGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCAC < SRR4302535.1427793/94‑1 (MQ=60)
GGAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCAC < SRR4302535.3936173/94‑1 (MQ=60)
GGAAGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCAC < SRR4302535.194289/94‑1 (MQ=60)
GAGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACG > SRR4302535.3885848/1‑94 (MQ=60)
AGGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGC > SRR4302535.3542276/1‑94 (MQ=60)
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ATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGC > NC_000913/3609396‑3609581
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
