Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,678,204	G→A	P456L (CCG→CTG)	yhjJ ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,678,204	0	G	A	100.0%	1009.4 / NA	275	P456L (CCG→CTG)	yhjJ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (114/161); total (114/161)

Only 100 of 279 total aligned reads displayed.

TCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCT  >  NC_000913/3678114‑3678292

 cATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCt                                                                                       <  2:3038407/93‑1 (MQ=255)

  aTCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTc                                                                                      >  2:1345375/1‑93 (MQ=255)

  aTCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTc                                                                                      <  2:1423145/93‑1 (MQ=255)

   tCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCg                                                                                     >  1:4485787/1‑93 (MQ=255)

   tCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCg                                                                                     >  1:1666655/1‑93 (MQ=255)

    ccGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGc                                                                                    >  2:3794710/1‑93 (MQ=255)

     cGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGcc                                                                                   >  1:4153863/1‑93 (MQ=255)

         gCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTc                                                                               <  2:1497346/93‑1 (MQ=255)

            aCAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGc                                                                            <  1:2047291/93‑1 (MQ=255)

            aCAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCCCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGc                                                                            >  1:392448/1‑93 (MQ=255)

              agagGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTg                                                                          >  2:1903673/1‑93 (MQ=255)

               gagGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgc                                                                         <  2:3720176/93‑1 (MQ=255)

               gagGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCAGCTgc                                                                         >  2:2032955/1‑93 (MQ=255)

                agGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgca                                                                        >  1:2667229/1‑93 (MQ=255)

                 ggtggtCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgcag                                                                       >  2:2629162/1‑93 (MQ=255)

                  gtggtCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgcagc                                                                      <  2:3642934/93‑1 (MQ=255)

                   tgggCGCAGCGGCGGTAGATGGGGCCATGATTTGACCCCAGACCCCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgcagca                                                                     <  1:1053329/93‑1 (MQ=255)

                      tCGCAGCGGTGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACTCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTa                                                                  <  2:638698/93‑1 (MQ=255)

                       cGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTAt                                                                 <  1:2378093/93‑1 (MQ=255)

                        gCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTAtt                                                                <  1:1980013/93‑1 (MQ=255)

                          aGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTaa                                                              <  2:841585/93‑1 (MQ=255)

                          aGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTaa                                                              <  1:3102041/93‑1 (MQ=255)

                           gcggcgGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAc                                                             <  1:1462264/93‑1 (MQ=255)

                           gcgccgGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAc                                                             <  1:3183326/93‑1 (MQ=255)

                            cggcggTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACg                                                            >  1:1831632/1‑93 (MQ=255)

                             ggcggTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGc                                                           >  2:884543/1‑93 (MQ=255)

                             ggcggTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGc                                                           >  1:16056/1‑93 (MQ=255)

                             ggcggTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGc                                                           <  1:4633485/93‑1 (MQ=255)

                                 gTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                       <  2:2754693/93‑1 (MQ=255)

                                 gTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                       <  2:2476487/93‑1 (MQ=255)

                                 gTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                       <  2:1214893/93‑1 (MQ=255)

                                 gTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                       <  2:4484381/93‑1 (MQ=255)

                                 gTAGATGGGGCAATGATTTGATCCGAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                       <  1:2944783/93‑1 (MQ=255)

                                  tAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCatat                                                      >  1:913488/1‑93 (MQ=255)

                                  tAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCatat                                                      <  1:3531537/93‑1 (MQ=255)

                                  tAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCatat                                                      >  2:1746512/1‑93 (MQ=255)

                                    gATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCa                                                    <  2:1619403/93‑1 (MQ=255)

                                    gATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCa                                                    >  2:3367299/1‑93 (MQ=255)

                                    gATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCa                                                    <  1:3156711/93‑1 (MQ=255)

                                    gATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCa                                                    >  2:3513080/1‑93 (MQ=255)

                                     aTGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAt                                                   >  2:2780046/1‑93 (MQ=255)

                                     aTGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAt                                                   >  1:4509669/1‑93 (MQ=255)

                                     aTGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAt                                                   <  2:1889335/93‑1 (MQ=255)

                                     aTGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAt                                                   <  2:752741/93‑1 (MQ=255)

                                      tGGGTCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAtt                                                  <  2:4555848/93‑1 (MQ=255)

                                      tGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAtt                                                  <  1:769175/93‑1 (MQ=255)

                                      tGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAtt                                                  >  2:324032/1‑93 (MQ=255)

                                      tGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAtt                                                  >  2:2930885/1‑93 (MQ=255)

                                       ggggCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTc                                                 <  1:4434106/93‑1 (MQ=255)

                                       ggggCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGAATTAACGCCATATCATTc                                                 >  2:547984/1‑93 (MQ=255)

                                          gCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGAc                                              >  1:2446319/1‑93 (MQ=255)

                                           ccATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAACTCCAGCCCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACa                                             <  2:4622524/93‑1 (MQ=255)

                                               gATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTg                                         <  2:3399873/93‑1 (MQ=255)

                                                 tttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGtt                                       >  1:2089259/1‑93 (MQ=255)

                                                 tttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGtt                                       <  1:3010520/93‑1 (MQ=255)

                                                 tttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGtt                                       >  1:1122442/1‑93 (MQ=255)

                                                  ttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTg                                      >  1:3451619/1‑93 (MQ=255)

                                                  ttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTg                                      >  1:3363768/1‑93 (MQ=255)

                                                  ttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTg                                      >  2:113120/1‑93 (MQ=255)

                                                  ttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTg                                      <  2:2414857/93‑1 (MQ=255)

                                                   tGATCCCAGACCGCCTGCAGCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGa                                     <  1:4325204/93‑1 (MQ=255)

                                                   tGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGa                                     <  2:1571555/93‑1 (MQ=255)

                                                    taTCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAc                                    <  1:3341795/92‑1 (MQ=255)

                                                    gATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAc                                    <  1:2736499/93‑1 (MQ=255)

                                                     aTCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACg                                   >  1:3645170/1‑93 (MQ=255)

                                                       cccAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCa                                 <  2:2109272/93‑1 (MQ=255)

                                                        ccAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAg                                <  2:1395697/93‑1 (MQ=255)

                                                        ccAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAg                                >  2:678293/1‑93 (MQ=255)

                                                        ccAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAg                                >  2:3351468/1‑93 (MQ=255)

                                                          aGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGAt                              <  2:3489991/93‑1 (MQ=255)

                                                           gACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATc                             >  2:3671941/1‑93 (MQ=255)

                                                           gACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATc                             <  2:1373533/93‑1 (MQ=255)

                                                           gACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATc                             <  1:2895719/93‑1 (MQ=255)

                                                           gACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATc                             >  1:3213056/1‑93 (MQ=255)

                                                           gACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATc                             >  2:1143350/1‑93 (MQ=255)

                                                            aCCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATcc                            <  2:4132296/93‑1 (MQ=255)

                                                            aCCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATcc                            >  2:2868480/1‑93 (MQ=255)

                                                               gCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGa                         <  2:3066076/93‑1 (MQ=255)

                                                                 cTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGAtt                       <  2:4659423/93‑1 (MQ=255)

                                                                  tGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGAttt                      <  2:2161300/93‑1 (MQ=255)

                                                                   gCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTa                     <  1:585564/93‑1 (MQ=255)

                                                                     aaCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAAc                   <  1:1285095/93‑1 (MQ=255)

                                                                     aaCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAAc                   <  1:2419452/93‑1 (MQ=255)

                                                                      aCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACa                  <  1:2563882/93‑1 (MQ=255)

                                                                      aCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACa                  <  1:3931323/93‑1 (MQ=255)

                                                                      aCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACa                  <  2:959905/93‑1 (MQ=255)

                                                                      aCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACa                  >  1:949342/1‑93 (MQ=255)

                                                                      aCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACa                  <  1:1518269/93‑1 (MQ=255)

                                                                          tttCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtctc              >  2:4241613/1‑93 (MQ=255)

                                                                          tttCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtctc              >  2:4333508/1‑93 (MQ=255)

                                                                          tttCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtctc              >  1:224329/1‑93 (MQ=255)

                                                                            tCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTa            <  2:3123167/93‑1 (MQ=255)

                                                                             cATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTAc           <  1:4057711/93‑1 (MQ=255)

                                                                             cATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTAc           <  2:3201303/93‑1 (MQ=255)

                                                                              aTGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTAcc          <  1:3702106/93‑1 (MQ=255)

                                                                                gTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGt        >  2:3927735/1‑93 (MQ=255)

                                                                                 ttAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTc       >  2:4047006/1‑93 (MQ=255)

                                                                                 ttAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTc       <  1:3463066/93‑1 (MQ=255)

                                                                                     aTTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGc   <  1:625975/93‑1 (MQ=255)

                                                                                      ttCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCt  >  1:1041107/1‑93 (MQ=255)

TCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCT  >  NC_000913/3678114‑3678292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTAA  >  NC_000913/3678111‑3678297

ACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCA                                                                                               <  SRR4302535.3635661/94‑1 (MQ=60)

ACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCA                                                                                               >  SRR4302535.2997523/1‑94 (MQ=60)

 CGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAG                                                                                              >  SRR4302535.251250/1‑94 (MQ=60)

 CGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAG                                                                                              <  SRR4302535.55665/94‑1 (MQ=60)

 CGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAG                                                                                              <  SRR4302535.3434338/94‑1 (MQ=60)

  GTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGC                                                                                             >  SRR4302535.4449410/1‑94 (MQ=60)

  GTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGC                                                                                             >  SRR4302535.3160828/1‑94 (MQ=60)

  GTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACAGCATGCAACGCTTTCATGTTAAATTCCAGC                                                                                             >  SRR4302535.3588035/1‑94 (MQ=60)

    CATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTC                                                                                           >  SRR4302535.4660190/1‑94 (MQ=60)

    CATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGAACGCCTGCAACGCTTTCATGTTAAATTCCAGCTC                                                                                           >  SRR4302535.244732/1‑94 (MQ=60)

     ATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCG                                                                                          >  SRR4302535.1678714/1‑94 (MQ=60)

     ATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCG                                                                                          >  SRR4302535.4516580/1‑94 (MQ=60)

       CCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCC                                                                                        >  SRR4302535.4182303/1‑94 (MQ=60)

        CGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCT                                                                                       >  SRR4302535.2412043/1‑94 (MQ=60)

         GTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTT                                                                                      <  SRR4302535.837953/94‑1 (MQ=60)

         GTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTT                                                                                      >  SRR4302535.2744146/1‑94 (MQ=60)

         GTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTT                                                                                      <  SRR4302535.1930919/94‑1 (MQ=60)

          TGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTT                                                                                     <  SRR4302535.47757/94‑1 (MQ=60)

           GGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTC                                                                                    >  SRR4302535.931658/1‑94 (MQ=60)

            GCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCG                                                                                   <  SRR4302535.3673592/94‑1 (MQ=60)

             CGACAGAGGTGGCCGCAGCGGCGGTAGATGGGGCTATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGG                                                                                  <  SRR4302535.3342429/94‑1 (MQ=60)

              GACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCCCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGC                                                                                 >  SRR4302535.395184/1‑94 (MQ=60)

               ACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCT                                                                                <  SRR4302535.2198609/94‑1 (MQ=60)

               ACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCT                                                                                <  SRR4302535.2062032/94‑1 (MQ=60)

                  GAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCA                                                                             >  SRR4302535.2686322/1‑94 (MQ=60)

                      TGGGCGCAGCGGCGGTAGATGGGGCCATGATTTGACCCCAGACCCCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAG                                                                         <  SRR4302535.1060818/94‑1 (MQ=60)

                       GGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGT                                                                        <  SRR4302535.1695847/94‑1 (MQ=60)

                          CGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATT                                                                     <  SRR4302535.2395173/94‑1 (MQ=60)

                          CGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATT                                                                     <  SRR4302535.4525092/94‑1 (MQ=60)

                           GCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTA                                                                    <  SRR4302535.1994268/94‑1 (MQ=60)

                           GCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTA                                                                    <  SRR4302535.3458272/94‑1 (MQ=60)

                             AGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAC                                                                  <  SRR4302535.3021224/94‑1 (MQ=60)

                             AGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAC                                                                  <  SRR4302535.3123635/94‑1 (MQ=60)

                              GCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACG                                                                 <  SRR4302535.2419453/94‑1 (MQ=60)

                              GCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACG                                                                 <  SRR4302535.4125648/94‑1 (MQ=60)

                              GCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACG                                                                 >  SRR4302535.1844849/1‑94 (MQ=60)

                              GCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACG                                                                 <  SRR4302535.1472740/94‑1 (MQ=60)

                              GCGCCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACG                                                                 <  SRR4302535.3205319/94‑1 (MQ=60)

                               CGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGC                                                                >  SRR4302535.16176/1‑94 (MQ=60)

                                GGCGGTAGATGGGTCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCC                                                               <  SRR4302535.1251062/94‑1 (MQ=60)

                                GGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCC                                                               <  SRR4302535.4664918/94‑1 (MQ=60)

                                 GCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCA                                                              <  SRR4302535.2015949/94‑1 (MQ=60)

                                 GCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCA                                                              >  SRR4302535.3582061/1‑94 (MQ=60)

                                  CGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCAT                                                             <  SRR4302535.3276950/94‑1 (MQ=60)

                                   GGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATA                                                            >  SRR4302535.3765110/1‑94 (MQ=60)

                                    GTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATAT                                                           >  SRR4302535.919979/1‑94 (MQ=60)

                                    GTAGATGGGGCAATGATTTGATCCGAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATAT                                                           <  SRR4302535.2965481/94‑1 (MQ=60)

                                     TAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATC                                                          <  SRR4302535.3556055/94‑1 (MQ=60)

                                      AGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCA                                                         <  SRR4302535.2494631/94‑1 (MQ=60)

                                       GATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAT                                                        >  SRR4302535.4540611/1‑94 (MQ=60)

                                       GATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAT                                                        <  SRR4302535.3178629/94‑1 (MQ=60)

                                        ATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATT                                                       <  SRR4302535.989642/94‑1 (MQ=60)

                                        ATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATT                                                       >  SRR4302535.4118294/1‑94 (MQ=60)

                                         TGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTC                                                      <  SRR4302535.231072/94‑1 (MQ=60)

                                         TGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTC                                                      <  SRR4302535.774588/94‑1 (MQ=60)

                                         TGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTC                                                      <  SRR4302535.4002030/94‑1 (MQ=60)

                                         TGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTC                                                      <  SRR4302535.2602961/94‑1 (MQ=60)

                                          GGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCG                                                     <  SRR4302535.4464489/94‑1 (MQ=60)

                                           GGGCCATGATTTGATCCCAGACCGCCCGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGA                                                    >  SRR4302535.3222163/1‑94 (MQ=60)

                                            GGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGAC                                                   >  SRR4302535.2463940/1‑94 (MQ=60)

                                             GCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACA                                                  <  SRR4302535.348017/94‑1 (MQ=60)

                                             GCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACA                                                  >  SRR4302535.2382313/1‑94 (MQ=60)

                                              CCATGATTTGATCCCAGGCCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAA                                                 <  SRR4302535.3540800/94‑1 (MQ=60)

                                                ATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACT                                               >  SRR4302535.3215433/1‑94 (MQ=60)

                                                 TGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTG                                              <  SRR4302535.691368/94‑1 (MQ=60)

                                                  GATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGT                                             <  SRR4302535.2968904/94‑1 (MQ=60)

                                                  GATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGT                                             >  SRR4302535.4385089/1‑94 (MQ=60)

                                                   ATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTT                                            >  SRR4302535.1130452/1‑94 (MQ=60)

                                                   ATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTT                                            >  SRR4302535.2104312/1‑94 (MQ=60)

                                                    TTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTG                                           >  SRR4302535.3387173/1‑94 (MQ=60)

                                                    TTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTG                                           <  SRR4302535.3031607/94‑1 (MQ=60)

                                                    TTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTG                                           <  SRR4302535.2928907/94‑1 (MQ=60)

                                                    TTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTG                                           >  SRR4302535.1057402/1‑94 (MQ=60)

                                                    TTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTG                                           >  SRR4302535.3475610/1‑94 (MQ=60)

                                                      TGATCCCATACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAC                                         <  SRR4302535.4217189/94‑1 (MQ=60)

                                                      TGATCCCAGACCGCCTGCAGCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAC                                         <  SRR4302535.4354783/94‑1 (MQ=60)

                                                      TGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAC                                         <  SRR4302535.4686192/94‑1 (MQ=60)

                                                       TATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACG                                        <  SRR4302535.3365077/94‑1 (MQ=60)

                                                       GATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACG                                        >  SRR4302535.3670414/1‑94 (MQ=60)

                                                       GATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACG                                        >  SRR4302535.2092696/1‑94 (MQ=60)

                                                       GATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACG                                        >  SRR4302535.897120/1‑94 (MQ=60)

                                                       GATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACG                                        <  SRR4302535.2756021/94‑1 (MQ=60)

                                                        ATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGC                                       >  SRR4302535.1587945/1‑94 (MQ=60)

                                                          CCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAG                                     <  SRR4302535.1173614/94‑1 (MQ=60)

                                                           CCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGA                                    <  SRR4302535.94258/94‑1 (MQ=60)

                                                             AGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATC                                  >  SRR4302535.3688689/1‑94 (MQ=60)

                                                             AGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATC                                  <  SRR4302535.3522722/94‑1 (MQ=60)

                                                             AGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATC                                  <  SRR4302535.3054855/94‑1 (MQ=60)

                                                             AGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATC                                  >  SRR4302535.3235308/1‑94 (MQ=60)

                                                              GACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCC                                 <  SRR4302535.2916199/94‑1 (MQ=60)

                                                              GACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCC                                 <  SRR4302535.2595823/94‑1 (MQ=60)

                                                              GACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCC                                 <  SRR4302535.2725486/94‑1 (MQ=60)

                                                               ACCGCCTGCAACGCTTTCATGTTAAATTTCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCT                                <  SRR4302535.4539520/94‑1 (MQ=60)

                                                               ACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCT                                <  SRR4302535.159962/94‑1 (MQ=60)

                                                                 CGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGA                              >  SRR4302535.4276183/1‑94 (MQ=60)

                                                                  GCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGAT                             <  SRR4302535.4027947/94‑1 (MQ=60)

                                                                   CCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATT                            <  SRR4302535.1891916/94‑1 (MQ=60)

                                                                   CCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATT                            <  SRR4302535.620871/94‑1 (MQ=60)

                                                                      GCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAA                         <  SRR4302535.589668/94‑1 (MQ=60)

                                                                       CAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAAC                        >  SRR4302535.2911626/1‑94 (MQ=60)

                                                                       CAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAAC                        >  SRR4302535.1763340/1‑94 (MQ=60)

                                                                       CAACACTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAAC                        <  SRR4302535.3371199/94‑1 (MQ=60)

                                                                        AACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACA                       >  SRR4302535.956065/1‑94 (MQ=60)

                                                                        AACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACA                       >  SRR4302535.2903093/1‑94 (MQ=60)

                                                                        AACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACA                       <  SRR4302535.1389079/94‑1 (MQ=60)

                                                                        AACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACA                       <  SRR4302535.4619858/94‑1 (MQ=60)

                                                                        AACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACA                       <  SRR4302535.1294253/94‑1 (MQ=60)

                                                                        AACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACA                       >  SRR4302535.2068382/1‑94 (MQ=60)

                                                                        AACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACA                       <  SRR4302535.2436873/94‑1 (MQ=60)

                                                                         ACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAT                      <  SRR4302535.3958164/94‑1 (MQ=60)

                                                                         ACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAT                      <  SRR4302535.1529204/94‑1 (MQ=60)

                                                                         ACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAT                      <  SRR4302535.2582336/94‑1 (MQ=60)

                                                                          CGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATC                     >  SRR4302535.111478/1‑94 (MQ=60)

                                                                          CGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATC                     <  SRR4302535.2472797/94‑1 (MQ=60)

                                                                          CGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATC                     <  SRR4302535.3895348/94‑1 (MQ=60)

                                                                          CGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATC                     <  SRR4302535.3386357/94‑1 (MQ=60)

                                                                           GCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCT                    <  SRR4302535.3132456/94‑1 (MQ=60)

                                                                           GCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCT                    >  SRR4302535.3957259/1‑94 (MQ=60)

                                                                           GCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCT                    <  SRR4302535.2118219/94‑1 (MQ=60)

                                                                            CTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTC                   >  SRR4302535.225875/1‑94 (MQ=60)

                                                                               TCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTAC                <  SRR4302535.3120185/94‑1 (MQ=60)

                                                                                CATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACC               <  SRR4302535.4468207/94‑1 (MQ=60)

                                                                                CATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACC               <  SRR4302535.4085486/94‑1 (MQ=60)

                                                                                 ATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCG              >  SRR4302535.1662868/1‑94 (MQ=60)

                                                                                 ATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCG              <  SRR4302535.3727747/94‑1 (MQ=60)

                                                                                  TGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGT             >  SRR4302535.3457729/1‑94 (MQ=60)

                                                                                   GTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTC            >  SRR4302535.1118446/1‑94 (MQ=60)

                                                                                    TTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCA           <  SRR4302535.3487137/94‑1 (MQ=60)

                                                                                      AAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGG         <  SRR4302535.1495373/94‑1 (MQ=60)

                                                                                      AAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGG         >  SRR4302535.3181390/1‑94 (MQ=60)

                                                                                       AATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGC        >  SRR4302535.639913/1‑94 (MQ=60)

                                                                                        ATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCT       >  SRR4302535.1048491/1‑94 (MQ=60)

                                                                                        ATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCT       <  SRR4302535.630329/94‑1 (MQ=60)

                                                                                        ATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCT       >  SRR4302535.1676790/1‑94 (MQ=60)

                                                                                         TTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTA      <  SRR4302535.1393935/94‑1 (MQ=60)

                                                                                          TCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTAT     >  SRR4302535.1334066/1‑94 (MQ=60)

                                                                                           CCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATT    >  SRR4302535.2465840/1‑94 (MQ=60)

                                                                                           CCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATT    >  SRR4302535.2804696/1‑94 (MQ=60)

                                                                                            CAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTA   >  SRR4302535.3778030/1‑94 (MQ=60)

                                                                                             AGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTAA  >  SRR4302535.2478210/1‑94 (MQ=60)

                                                                                             AGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTAA  <  SRR4302535.278963/94‑1 (MQ=60)

ACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTAA  >  NC_000913/3678111‑3678297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`